Wall clock time and date at job start Tue Mar 31 2020 05:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31778 * 122.75123 * 2 1 4 4 C 1.29028 * 117.12322 * 180.02562 * 3 2 1 5 5 S 1.70979 * 110.16643 * 359.71778 * 4 3 2 6 6 C 1.33637 * 122.74314 * 179.97438 * 2 1 3 7 7 C 1.50698 * 126.04443 * 0.02562 * 6 2 1 8 8 C 1.53006 * 109.47184 * 89.99632 * 7 6 2 9 9 C 1.50698 * 109.47184 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00025 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99801 * 0.02562 * 11 9 8 13 13 C 1.46496 * 119.99846 * 180.02562 * 11 9 8 14 14 H 1.09000 * 109.47640 * 0.02562 * 13 11 9 15 15 C 1.52998 * 109.47127 * 239.99814 * 13 11 9 16 16 C 1.50703 * 109.47094 * 120.00618 * 13 11 9 17 17 H 1.07998 * 119.99868 * 359.97438 * 16 13 11 18 18 C 1.37883 * 120.00147 * 180.02562 * 16 13 11 19 19 N 1.31512 * 119.99862 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99928 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47339 * 89.99750 * 20 18 16 22 22 H 1.48500 * 109.46918 * 209.99967 * 20 18 16 23 23 H 1.48502 * 109.47255 * 329.99614 * 20 18 16 24 24 H 1.08998 * 109.46971 * 270.00274 * 1 2 3 25 25 H 1.09005 * 109.46674 * 30.00057 * 1 2 3 26 26 H 1.08996 * 109.47566 * 150.00244 * 1 2 3 27 27 H 1.07996 * 124.91376 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46665 * 330.00021 * 7 6 2 29 29 H 1.08993 * 109.47304 * 209.99577 * 7 6 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 8 7 6 31 31 H 1.09001 * 109.46998 * 60.00038 * 8 7 6 32 32 H 1.08996 * 109.47300 * 89.99776 * 12 11 9 33 33 H 1.09010 * 109.46976 * 209.99920 * 12 11 9 34 34 H 1.09007 * 109.47283 * 329.99472 * 12 11 9 35 35 H 1.09011 * 109.46637 * 60.00212 * 15 13 11 36 36 H 1.08996 * 109.47564 * 179.97438 * 15 13 11 37 37 H 1.08995 * 109.47765 * 300.00593 * 15 13 11 38 38 H 0.96998 * 120.00264 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 16 3.9332 -0.6733 0.0068 6 6 2.2299 -1.1240 0.0005 7 6 1.6846 -2.5289 0.0006 8 6 1.5005 -3.0046 -1.4419 9 6 0.9546 -4.4093 -1.4419 10 8 0.7341 -4.9741 -0.3915 11 7 0.7106 -5.0375 -2.6090 12 6 0.9765 -4.3550 -3.8777 13 6 0.1794 -6.4028 -2.6089 14 1 0.0470 -6.7411 -1.5812 15 6 1.1589 -7.3311 -3.3298 16 6 -1.1492 -6.4249 -3.3197 17 1 -1.5573 -5.5131 -3.7301 18 6 -1.8443 -7.6091 -3.4452 19 7 -1.3476 -8.7193 -2.9450 20 14 -3.4915 -7.6364 -4.3257 21 1 -3.2758 -7.8979 -5.7715 22 1 -4.3426 -8.7086 -3.7503 23 1 -4.1657 -6.3242 -4.1553 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 4.2060 1.8024 -0.0002 28 1 0.7233 -2.5454 0.5141 29 1 2.3826 -3.1895 0.5147 30 1 0.8025 -2.3439 -1.9561 31 1 2.4618 -2.9880 -1.9555 32 1 2.0002 -4.5583 -4.1921 33 1 0.2842 -4.7179 -4.6376 34 1 0.8428 -3.2810 -3.7476 35 1 2.1200 -7.3151 -2.8156 36 1 0.7640 -8.3470 -3.3293 37 1 1.2910 -6.9927 -4.3574 38 1 -1.8364 -9.5524 -3.0336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339291972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:25 Heat of formation + Delta-G solvation = -2.778605 kcal Electronic energy + Delta-G solvation = -19805.608180 eV Core-core repulsion = 16774.740258 eV Total energy + Delta-G solvation = -3030.867922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06840 -39.08978 -35.49845 -34.23103 -32.84962 -31.05294 -29.49781 -27.52174 -26.08538 -25.25253 -25.04130 -23.44343 -20.83076 -18.92130 -18.27012 -18.21222 -16.67385 -16.21604 -15.72775 -15.42726 -14.90202 -14.88170 -14.23337 -13.73556 -13.43729 -13.13798 -12.69202 -12.59834 -12.54669 -12.45908 -12.14357 -12.00888 -11.60712 -11.50965 -11.44411 -11.07273 -10.87207 -10.78222 -10.68484 -10.27698 -10.18241 -9.78107 -9.41302 -9.19429 -8.98241 -8.75059 -8.43924 -7.60533 -6.08669 -4.16807 0.58297 1.24113 1.63061 2.65625 3.25111 3.31931 3.33884 3.38290 3.92491 4.10808 4.38344 4.77533 4.94039 5.00978 5.14353 5.22435 5.27607 5.39126 5.53862 5.57362 5.67771 5.75801 5.84279 5.98656 6.04759 6.08899 6.26261 6.35525 6.74249 6.82265 7.05550 7.40697 7.52473 7.58589 7.70458 8.00273 8.18818 8.51827 8.81570 9.03693 9.49781 10.96652 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.003657 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.186042 B = 7654.467799 C = 8052.324380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 N -0.467 5.467 4 C 0.010 3.990 5 S 0.114 5.886 6 C -0.205 4.205 7 C -0.027 4.027 8 C -0.134 4.134 9 C 0.503 3.497 10 O -0.554 6.554 11 N -0.592 5.592 12 C 0.083 3.917 13 C 0.257 3.743 14 H 0.063 0.937 15 C -0.146 4.146 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.197 0.803 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.010 0.990 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 16.073 2.349 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 N -0.180 5.180 4 C -0.288 4.288 5 S 0.367 5.633 6 C -0.326 4.326 7 C -0.067 4.067 8 C -0.175 4.175 9 C 0.290 3.710 10 O -0.434 6.434 11 N -0.323 5.323 12 C -0.061 4.061 13 C 0.157 3.843 14 H 0.081 0.919 15 C -0.204 4.204 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.213 0.787 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.049 15.597 2.907 18.781 hybrid contribution -1.559 0.129 -0.710 1.718 sum 8.490 15.726 2.198 18.006 Atomic orbital electron populations 1.20397 0.86937 1.03550 1.03102 1.20265 0.98337 0.86092 1.02939 1.66174 1.05055 1.31731 1.15081 1.28216 0.95253 1.00005 1.05301 1.84073 1.07617 1.03522 1.68076 1.25863 0.94675 1.01021 1.11015 1.19812 1.02501 0.87556 0.96867 1.21696 1.02675 0.95589 0.97494 1.20313 0.78877 0.87519 0.84326 1.90653 1.53836 1.67795 1.31082 1.48243 1.62107 1.17526 1.04460 1.21609 1.00571 0.95950 0.87978 1.18941 0.91385 0.75134 0.98873 0.91875 1.22080 0.96319 1.04154 0.97887 1.21320 1.03664 0.94538 1.36988 0.92258 1.24896 0.97970 0.95424 0.95490 1.69877 1.38491 0.99174 1.45014 0.86495 0.83502 0.77843 0.79561 1.20622 1.21087 1.19916 0.90610 0.90692 0.90265 0.78658 0.88687 0.89706 0.89162 0.89516 0.93904 0.90079 0.92812 0.97071 0.88862 0.95194 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.82 36.01 0.35 -0.51 16 2 C 0.05 0.67 6.74 -84.22 -0.57 0.11 16 3 N -0.47 -5.77 10.53 -11.90 -0.13 -5.90 16 4 C 0.01 0.10 12.23 51.58 0.63 0.73 16 5 S 0.11 1.12 23.22 -107.50 -2.50 -1.37 16 6 C -0.20 -2.46 5.84 -35.92 -0.21 -2.67 16 7 C -0.03 -0.36 4.44 -27.88 -0.12 -0.49 16 8 C -0.13 -1.89 4.23 -27.88 -0.12 -2.01 16 9 C 0.50 9.97 7.67 -10.99 -0.08 9.89 16 10 O -0.55 -13.15 15.31 5.56 0.09 -13.06 16 11 N -0.59 -12.36 2.75 -175.26 -0.48 -12.84 16 12 C 0.08 1.36 9.24 59.85 0.55 1.91 16 13 C 0.26 6.50 2.64 -69.08 -0.18 6.32 16 14 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 15 C -0.15 -3.48 8.97 37.16 0.33 -3.14 16 16 C -0.53 -14.07 7.99 -34.44 -0.27 -14.35 16 17 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.83 7.19 -51.93 -0.37 0.46 16 27 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.09 1.32 7.39 -51.93 -0.38 0.94 16 29 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.09 1.15 7.24 -51.93 -0.38 0.78 16 31 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.42 7.02 -51.92 -0.36 1.06 16 34 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 35 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 37 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -31.56 327.49 -7.64 -39.20 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.38 Total: 0.12 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 0.22 Total: -2.56 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.02 Total: -43.09 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.56 -7.64 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.423 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds