Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31781 * 122.75668 * 2 1 4 4 C 1.29025 * 117.12804 * 180.02562 * 3 2 1 5 5 S 1.70980 * 110.16678 * 359.72437 * 4 3 2 6 6 C 1.33645 * 122.74701 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.03526 * 0.02562 * 6 2 1 8 8 C 1.52995 * 109.46974 * 90.00169 * 7 6 2 9 9 C 1.50704 * 109.46974 * 179.97438 * 8 7 6 10 10 O 1.21276 * 119.99791 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00250 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99674 * 0.02562 * 11 9 8 13 13 C 1.46503 * 120.00310 * 179.97438 * 11 9 8 14 14 H 1.08999 * 109.46849 * 0.02562 * 13 11 9 15 15 C 1.52997 * 109.46749 * 119.99959 * 13 11 9 16 16 C 1.50692 * 109.47272 * 240.00000 * 13 11 9 17 17 H 1.08003 * 120.00316 * 354.37084 * 16 13 11 18 18 C 1.37875 * 120.00133 * 174.37226 * 16 13 11 19 19 N 1.31516 * 120.00510 * 156.90156 * 18 16 13 20 20 Si 1.86810 * 119.99756 * 337.17312 * 18 16 13 21 21 H 1.48501 * 109.47061 * 179.72434 * 20 18 16 22 22 H 1.48495 * 109.46894 * 299.72787 * 20 18 16 23 23 H 1.48496 * 109.46696 * 59.72479 * 20 18 16 24 24 H 1.09000 * 109.47178 * 270.00433 * 1 2 3 25 25 H 1.09000 * 109.46769 * 30.00145 * 1 2 3 26 26 H 1.08994 * 109.47313 * 150.00116 * 1 2 3 27 27 H 1.08004 * 124.91558 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47200 * 329.99976 * 7 6 2 29 29 H 1.09003 * 109.46884 * 209.99830 * 7 6 2 30 30 H 1.08998 * 109.47315 * 59.99878 * 8 7 6 31 31 H 1.09003 * 109.47038 * 299.99566 * 8 7 6 32 32 H 1.09007 * 109.46817 * 269.99788 * 12 11 9 33 33 H 1.08992 * 109.47593 * 29.99650 * 12 11 9 34 34 H 1.08998 * 109.47142 * 150.00162 * 12 11 9 35 35 H 1.09002 * 109.47176 * 173.30506 * 15 13 11 36 36 H 1.09005 * 109.47375 * 293.30343 * 15 13 11 37 37 H 1.09000 * 109.47483 * 53.30246 * 15 13 11 38 38 H 0.96989 * 119.99527 * 355.20009 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1082 0.0000 4 6 3.5041 0.9817 -0.0005 5 16 3.9333 -0.6733 0.0066 6 6 2.2299 -1.1240 0.0005 7 6 1.6845 -2.5289 0.0006 8 6 1.5005 -3.0046 -1.4419 9 6 0.9557 -4.4097 -1.4418 10 8 0.7367 -4.9751 -0.3914 11 7 0.7119 -5.0381 -2.6089 12 6 0.9771 -4.3553 -3.8777 13 6 0.1828 -6.4042 -2.6088 14 1 0.0515 -6.7429 -1.5811 15 6 -1.1665 -6.4284 -3.3296 16 6 1.1484 -7.3169 -3.3196 17 1 2.0192 -6.9062 -3.8090 18 6 0.9204 -8.6765 -3.3452 19 7 1.4527 -9.4149 -4.2944 20 14 -0.1509 -9.4686 -2.0357 21 1 -0.2440 -10.9289 -2.2891 22 1 0.4494 -9.2356 -0.6976 23 1 -1.5095 -8.8709 -2.0796 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5138 27 1 4.2061 1.8024 -0.0002 28 1 0.7232 -2.5454 0.5141 29 1 2.3825 -3.1896 0.5148 30 1 2.4619 -2.9881 -1.9553 31 1 0.8025 -2.3439 -1.9561 32 1 0.0847 -3.8141 -4.1924 33 1 1.8006 -3.6533 -3.7474 34 1 1.2429 -5.0904 -4.6372 35 1 -1.5040 -7.4596 -3.4345 36 1 -1.8978 -5.8640 -2.7509 37 1 -1.0593 -5.9790 -4.3168 38 1 1.9475 -8.9951 -5.0153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339291973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = -2.491844 kcal Electronic energy + Delta-G solvation = -19859.501250 eV Core-core repulsion = 16828.645762 eV Total energy + Delta-G solvation = -3030.855488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.12166 -39.24936 -35.67230 -34.31832 -32.85482 -31.20622 -30.10499 -27.66340 -26.24636 -25.17207 -24.76665 -23.49110 -20.72923 -18.97578 -18.33961 -18.23508 -17.54270 -16.57070 -15.75388 -15.50599 -15.10876 -14.86321 -13.93696 -13.71140 -13.54613 -13.23633 -12.87422 -12.73180 -12.62535 -12.53692 -12.35905 -12.08590 -11.88208 -11.72433 -11.58661 -11.42806 -11.25898 -10.86483 -10.51003 -10.10457 -9.82359 -9.79470 -9.45987 -9.18761 -9.10057 -8.82017 -8.32524 -7.80341 -6.53112 -4.15552 0.54043 1.20511 1.59828 2.60790 3.21866 3.39034 3.48090 3.61612 3.78819 4.06021 4.46164 4.68387 4.88070 4.95466 5.05632 5.12954 5.19226 5.31168 5.45258 5.46463 5.63195 5.69097 5.71467 5.88299 5.96262 6.00652 6.19395 6.25242 6.33783 6.41787 6.58862 6.93029 7.13845 7.42221 7.54137 7.83635 8.26878 8.32310 8.73047 8.91510 9.49745 10.82055 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.003744 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.850273 B = 7476.054037 C = 7619.469186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.467 5.467 4 C 0.011 3.989 5 S 0.118 5.882 6 C -0.207 4.207 7 C -0.027 4.027 8 C -0.133 4.133 9 C 0.504 3.496 10 O -0.555 6.555 11 N -0.587 5.587 12 C 0.084 3.916 13 C 0.235 3.765 14 H 0.054 0.946 15 C -0.155 4.155 16 C -0.618 4.618 17 H 0.061 0.939 18 C 0.043 3.957 19 N -0.894 5.894 20 Si 1.032 2.968 21 H -0.283 1.283 22 H -0.279 1.279 23 H -0.276 1.276 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.197 0.803 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.025 0.975 37 H 0.045 0.955 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 19.243 5.484 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 N -0.181 5.181 4 C -0.287 4.287 5 S 0.372 5.628 6 C -0.328 4.328 7 C -0.067 4.067 8 C -0.174 4.174 9 C 0.291 3.709 10 O -0.435 6.435 11 N -0.317 5.317 12 C -0.060 4.060 13 C 0.133 3.867 14 H 0.072 0.928 15 C -0.213 4.213 16 C -0.656 4.656 17 H 0.080 0.920 18 C -0.164 4.164 19 N -0.526 5.526 20 Si 0.859 3.141 21 H -0.209 1.209 22 H -0.205 1.205 23 H -0.202 1.202 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.214 0.786 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.598 17.501 6.542 18.752 hybrid contribution 0.013 1.702 -0.816 1.888 sum 1.611 19.203 5.726 20.103 Atomic orbital electron populations 1.20380 0.87024 1.03429 1.03047 1.20251 0.98293 0.86109 1.03023 1.66173 1.05069 1.31698 1.15170 1.28231 0.95253 1.00088 1.05166 1.84148 1.07444 1.03393 1.67821 1.25851 0.94816 1.00950 1.11177 1.19806 1.02498 0.87704 0.96717 1.21685 1.02900 0.95114 0.97686 1.20360 0.78801 0.87574 0.84156 1.90643 1.53937 1.67833 1.31063 1.47978 1.62477 1.16516 1.04771 1.21626 0.99249 0.97433 0.87716 1.19168 0.91616 0.78047 0.97867 0.92780 1.22421 0.97786 1.01241 0.99875 1.22096 1.10987 0.93324 1.39197 0.92044 1.25631 0.97947 0.93987 0.98796 1.70869 1.32783 1.39328 1.09629 0.84218 0.76774 0.76407 0.76715 1.20915 1.20491 1.20170 0.90632 0.90688 0.90420 0.78611 0.88765 0.89585 0.89234 0.89196 0.93731 0.92592 0.89981 0.91984 0.95594 0.93546 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.82 36.01 0.35 -0.42 16 2 C 0.05 0.64 6.74 -84.22 -0.57 0.08 16 3 N -0.47 -5.63 10.53 -11.89 -0.13 -5.75 16 4 C 0.01 0.10 12.23 51.58 0.63 0.73 16 5 S 0.12 1.18 23.22 -107.50 -2.50 -1.32 16 6 C -0.21 -2.43 5.84 -35.92 -0.21 -2.64 16 7 C -0.03 -0.35 4.44 -27.88 -0.12 -0.47 16 8 C -0.13 -1.82 4.23 -27.88 -0.12 -1.94 16 9 C 0.50 9.68 7.67 -10.99 -0.08 9.60 16 10 O -0.56 -12.63 15.31 5.56 0.09 -12.55 16 11 N -0.59 -11.93 2.75 -175.26 -0.48 -12.41 16 12 C 0.08 1.36 9.10 59.85 0.54 1.90 16 13 C 0.23 5.64 2.23 -69.09 -0.15 5.48 16 14 H 0.05 1.42 5.48 -51.93 -0.28 1.14 16 15 C -0.15 -3.35 9.01 37.16 0.33 -3.01 16 16 C -0.62 -16.86 8.30 -34.45 -0.29 -17.15 16 17 H 0.06 1.78 7.37 -52.48 -0.39 1.39 16 18 C 0.04 1.23 5.20 -17.82 -0.09 1.13 16 19 N -0.89 -26.59 13.70 55.43 0.76 -25.83 16 20 Si 1.03 25.19 26.44 -169.99 -4.49 20.70 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.24 6.12 56.52 0.35 -5.89 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.73 7.19 -51.93 -0.37 0.35 16 27 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16 28 H 0.09 1.22 7.39 -51.93 -0.38 0.84 16 29 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.09 1.15 7.40 -51.93 -0.38 0.76 16 31 H 0.09 1.06 7.94 -51.93 -0.41 0.65 16 32 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 34 H 0.08 1.49 6.91 -51.93 -0.36 1.13 16 35 H 0.06 1.40 5.44 -51.93 -0.28 1.11 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.94 7.46 -51.93 -0.39 0.55 16 38 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -32.55 323.58 -6.98 -39.53 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.33 Total: -0.53 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.23 Total: -6.71 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.15 Total: -43.99 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -4.49 Total: 20.70 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.50 Total: -1.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.55 -6.98 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339291973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.039 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds