Wall clock time and date at job start Tue Mar 31 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34231 * 122.11021 * 2 1 4 4 S 1.71070 * 109.09570 * 179.70086 * 3 2 1 5 5 C 1.76101 * 90.29950 * 0.33881 * 4 3 2 6 6 C 1.47255 * 125.54031 * 179.91645 * 5 4 3 7 7 O 1.21623 * 119.99861 * 179.69362 * 6 5 4 8 8 N 1.34777 * 120.00170 * 359.69799 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27626 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.53010 * 109.47146 * 299.99645 * 10 9 8 12 12 C 1.53000 * 109.47166 * 59.99736 * 10 9 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47008 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00362 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99653 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00157 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00386 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47111 * 89.99562 * 18 16 14 20 20 H 1.48494 * 109.47201 * 210.00305 * 18 16 14 21 21 H 1.48506 * 109.46710 * 330.00066 * 18 16 14 22 22 N 1.30553 * 108.91343 * 359.65544 * 5 4 3 23 23 H 1.08993 * 109.47659 * 270.00182 * 1 2 3 24 24 H 1.09006 * 109.47015 * 30.00599 * 1 2 3 25 25 H 1.09002 * 109.46827 * 149.99774 * 1 2 3 26 26 H 1.08002 * 125.45182 * 359.93931 * 3 2 1 27 27 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 29 29 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 30 30 H 1.09003 * 109.46863 * 59.99870 * 11 10 9 31 31 H 1.09001 * 109.47172 * 179.97438 * 11 10 9 32 32 H 1.09000 * 109.46753 * 300.00454 * 11 10 9 33 33 H 1.08990 * 109.47258 * 60.00092 * 12 10 9 34 34 H 1.09001 * 109.46739 * 180.02562 * 12 10 9 35 35 H 1.08999 * 109.47407 * 299.99599 * 12 10 9 36 36 H 1.08990 * 109.47021 * 299.99845 * 13 10 9 37 37 H 1.09002 * 109.46620 * 60.00037 * 13 10 9 38 38 H 0.96996 * 120.00642 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2205 1.1370 0.0000 4 16 3.8872 0.7517 0.0084 5 6 3.4996 -0.9661 0.0011 6 6 4.4801 -2.0648 0.0017 7 8 4.0991 -3.2198 0.0019 8 7 5.7996 -1.7904 0.0022 9 6 6.7750 -2.8835 -0.0033 10 6 8.1908 -2.3037 -0.0085 11 6 8.3842 -1.4413 -1.2576 12 6 8.3946 -1.4445 1.2410 13 6 9.2095 -3.4452 -0.0136 14 6 10.6041 -2.8740 -0.0193 15 1 10.7493 -1.8038 -0.0189 16 6 11.6945 -3.7177 -0.0241 17 7 12.9116 -3.2192 -0.0285 18 14 11.4435 -5.5687 -0.0241 19 1 11.3714 -6.0585 -1.4241 20 1 12.5811 -6.2226 0.6712 21 1 10.1781 -5.8965 0.6808 22 7 2.2017 -1.1071 0.0006 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.8082 2.1352 -0.0009 27 1 6.1035 -0.8692 0.0017 28 1 6.6372 -3.4979 0.8865 29 1 6.6299 -3.4956 -0.8934 30 1 7.6585 -0.6280 -1.2535 31 1 9.3928 -1.0278 -1.2610 32 1 8.2390 -2.0534 -2.1477 33 1 8.2569 -2.0587 2.1307 34 1 9.4032 -1.0310 1.2370 35 1 7.6690 -0.6312 1.2450 36 1 9.0717 -4.0591 0.8763 37 1 9.0644 -4.0576 -0.9036 38 1 13.6788 -3.8127 -0.0322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346911986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:19 Heat of formation + Delta-G solvation = -6.316035 kcal Electronic energy + Delta-G solvation = -19569.996289 eV Core-core repulsion = 16538.974972 eV Total energy + Delta-G solvation = -3031.021317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47280 -39.36501 -37.23930 -33.84316 -32.36914 -32.03194 -28.33893 -28.04385 -27.25003 -26.61441 -25.15609 -22.53206 -20.92711 -19.85955 -19.06742 -18.01303 -17.10005 -16.73493 -15.91904 -15.77420 -14.80558 -14.78203 -14.19370 -13.87006 -13.77668 -13.69683 -13.44917 -12.86771 -12.79755 -12.77300 -12.34992 -12.29062 -11.70195 -11.29641 -11.18106 -11.04266 -10.65546 -10.59865 -10.55460 -10.02749 -10.00804 -9.90395 -9.77095 -9.55358 -9.15239 -9.03378 -8.91984 -8.55390 -6.06165 -4.03814 -0.02960 0.87918 1.30622 2.10369 2.79620 3.09179 3.30747 3.39031 3.42706 4.13884 4.44132 4.61770 4.70644 4.84081 5.24217 5.25907 5.26014 5.29834 5.45419 5.47432 5.56391 5.83937 6.03110 6.03250 6.08824 6.24301 6.29888 6.54601 6.57321 6.82671 6.97239 7.00187 7.15257 7.19436 7.32450 7.48117 7.75765 8.04597 8.50234 8.97551 9.56369 11.06462 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.039995 B = 0.003459 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.913994 B = 8093.801958 C = 8592.025067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 C -0.270 4.270 4 S 0.181 5.819 5 C 0.006 3.994 6 C 0.588 3.412 7 O -0.503 6.503 8 N -0.709 5.709 9 C 0.126 3.874 10 C -0.064 4.064 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.002 4.002 14 C -0.512 4.512 15 H 0.079 0.921 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.265 1.265 22 N -0.400 5.400 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.184 0.816 27 H 0.399 0.601 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.508 11.121 0.100 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.411 4.411 4 S 0.436 5.564 5 C -0.271 4.271 6 C 0.369 3.631 7 O -0.377 6.377 8 N -0.362 5.362 9 C 0.004 3.996 10 C -0.064 4.064 11 C -0.188 4.188 12 C -0.188 4.188 13 C -0.040 4.040 14 C -0.550 4.550 15 H 0.097 0.903 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.189 1.189 22 N -0.117 5.117 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.201 0.799 27 H 0.235 0.765 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.825 10.241 0.114 22.314 hybrid contribution -0.815 -0.404 -0.022 0.910 sum -20.640 9.837 0.092 22.864 Atomic orbital electron populations 1.20409 0.86741 1.03588 1.03196 1.20401 0.99030 0.85941 1.02877 1.26509 0.97747 1.04801 1.12009 1.83929 1.05134 1.03417 1.63939 1.27618 0.94240 0.95663 1.09540 1.16718 0.81629 0.86536 0.78265 1.90857 1.79166 1.19451 1.48220 1.45989 1.04582 1.11479 1.74181 1.21803 0.87263 0.88063 1.02483 1.20727 0.91820 0.97939 0.95943 1.21806 1.02081 0.98094 0.96830 1.21798 1.02068 0.98102 0.96819 1.19595 0.94561 0.93114 0.96689 1.21061 0.88086 0.95242 1.50569 0.90346 1.24995 0.95189 0.98525 0.94684 1.69897 0.97889 1.35228 1.51232 0.86863 0.78042 0.86354 0.78545 1.20354 1.21512 1.18943 1.66494 1.03546 1.30404 1.11219 0.90461 0.90591 0.90297 0.79868 0.76540 0.91077 0.91091 0.95113 0.90618 0.93178 0.93172 0.90623 0.95109 0.96214 0.96668 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.28 36.00 0.37 -0.21 16 2 C 0.06 0.58 6.68 -84.49 -0.56 0.02 16 3 C -0.27 -2.25 10.82 29.32 0.32 -1.93 16 4 S 0.18 1.66 22.31 -107.50 -2.40 -0.74 16 5 C 0.01 0.08 7.46 -14.43 -0.11 -0.02 16 6 C 0.59 9.22 7.81 -12.60 -0.10 9.12 16 7 O -0.50 -9.79 17.07 5.26 0.09 -9.70 16 8 N -0.71 -9.97 4.95 -61.44 -0.30 -10.27 16 9 C 0.13 2.04 4.56 -4.04 -0.02 2.02 16 10 C -0.06 -1.12 0.54 -154.50 -0.08 -1.20 16 11 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 12 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 13 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 14 C -0.51 -13.36 8.20 -34.44 -0.28 -13.64 16 15 H 0.08 2.16 5.92 -52.49 -0.31 1.85 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 18 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 N -0.40 -5.64 10.57 -7.69 -0.08 -5.72 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.37 8.12 -51.93 -0.42 -0.06 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 27 H 0.40 4.74 5.31 -40.82 -0.22 4.53 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 35 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -32.06 324.40 -7.00 -39.05 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.24 Total: -0.03 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.05 Total: -7.94 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.39 Total: -42.07 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.40 Total: -0.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.06 -7.00 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346911986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.736 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds