Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46920 * 2 1 4 4 C 1.50696 * 109.47207 * 240.00136 * 2 1 3 5 5 H 1.08003 * 119.99973 * 240.00053 * 4 2 1 6 6 C 1.37879 * 119.99980 * 59.99570 * 4 2 1 7 7 N 1.31510 * 120.00128 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99563 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47234 * 60.00633 * 8 6 4 10 10 H 1.48502 * 109.47048 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47649 * 300.00108 * 8 6 4 12 12 C 1.52998 * 109.46924 * 119.99623 * 2 1 3 13 13 N 1.46496 * 109.47635 * 300.00102 * 12 2 1 14 14 C 1.34777 * 120.00415 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99588 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00162 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.47027 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47238 * 180.02562 * 17 16 14 19 19 C 1.33635 * 122.75319 * 124.73253 * 18 17 16 20 20 S 1.76192 * 107.92524 * 179.97438 * 19 18 17 21 21 C 1.70976 * 90.28427 * 0.27803 * 20 19 18 22 22 N 1.29027 * 110.16712 * 359.83656 * 21 20 19 23 23 H 1.09002 * 109.46933 * 300.00517 * 1 2 3 24 24 H 1.09004 * 109.46976 * 59.99654 * 1 2 3 25 25 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46602 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46905 * 299.99666 * 3 2 1 28 28 H 1.08992 * 109.47209 * 60.00024 * 3 2 1 29 29 H 0.97001 * 119.99909 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46793 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.46887 * 60.00459 * 12 2 1 32 32 H 0.97001 * 119.99724 * 0.02562 * 13 12 2 33 33 H 1.09002 * 109.47046 * 60.00284 * 16 14 13 34 34 H 1.08998 * 109.47040 * 300.00114 * 16 14 13 35 35 H 1.08997 * 109.47344 * 59.99930 * 17 16 14 36 36 H 1.08998 * 109.47310 * 299.99956 * 17 16 14 37 37 H 1.08001 * 126.03202 * 0.03585 * 19 18 17 38 38 H 1.08001 * 124.91761 * 179.84059 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0082 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6696 15 8 2.5749 -1.4768 3.7808 16 6 1.3758 0.2201 4.9000 17 6 1.8857 -0.5012 6.1492 18 6 1.3833 0.2092 7.3797 19 6 0.6900 -0.4102 8.3397 20 16 0.3043 0.7778 9.5824 21 6 1.1066 1.9910 8.6837 22 7 1.5863 1.4936 7.5941 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7095 1.1617 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.9937 0.7579 2.3564 33 1 0.2858 0.2201 4.9004 34 1 1.7392 1.2477 4.8995 35 1 2.9757 -0.5017 6.1490 36 1 1.5220 -1.5287 6.1494 37 1 0.4155 -1.4546 8.3519 38 1 1.1987 3.0241 8.9846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468843594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = -8.817809 kcal Electronic energy + Delta-G solvation = -19391.768081 eV Core-core repulsion = 16360.638279 eV Total energy + Delta-G solvation = -3031.129802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18747 -39.14369 -36.38804 -33.46679 -33.23453 -30.92932 -29.91039 -26.30492 -25.71078 -25.42851 -24.92197 -23.45247 -19.98104 -19.74738 -18.75829 -18.11414 -16.91521 -16.02609 -15.73689 -15.34264 -15.08689 -14.71552 -14.43953 -13.80012 -13.57095 -13.46283 -12.96803 -12.89525 -12.49933 -12.16808 -11.98126 -11.63582 -11.35459 -11.17044 -11.04609 -10.82840 -10.72070 -10.36776 -10.19431 -9.90520 -9.72902 -9.61691 -9.54331 -9.24452 -9.01321 -8.77606 -8.42923 -8.27901 -6.00920 -4.11063 0.47022 1.13837 1.46755 2.55741 3.11075 3.30855 3.35071 3.38538 3.79483 4.00620 4.41264 4.80042 4.91872 5.04514 5.10021 5.25673 5.28020 5.43275 5.67147 5.84648 5.99147 6.13212 6.26597 6.35439 6.52962 6.80568 6.84474 6.95743 7.03672 7.07361 7.37251 7.48190 7.57223 7.70445 8.02417 8.08987 8.17952 8.40059 8.74753 8.89749 9.54650 11.00463 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.048471 B = 0.002744 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.527023 B =10199.802467 C =10440.377918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.504 3.496 15 O -0.557 6.557 16 C -0.133 4.133 17 C -0.027 4.027 18 C 0.070 3.930 19 C -0.253 4.253 20 S 0.104 5.896 21 C 0.024 3.976 22 N -0.464 5.464 23 H 0.006 0.994 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.179 0.821 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 2.670 21.629 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.290 3.710 15 O -0.436 6.436 16 C -0.174 4.174 17 C -0.068 4.068 18 C -0.061 4.061 19 C -0.392 4.392 20 S 0.356 5.644 21 C -0.275 4.275 22 N -0.177 5.177 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.233 0.767 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.196 0.804 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.214 2.444 22.128 22.494 hybrid contribution 0.293 -0.381 -1.574 1.646 sum -2.921 2.063 20.554 20.863 Atomic orbital electron populations 1.21832 0.97804 0.99136 1.00080 1.18348 0.92763 0.92760 0.90593 1.21832 0.98592 0.98362 1.00095 1.20959 1.31512 1.12112 0.89942 0.92507 1.24879 0.94860 0.94925 0.98838 1.69793 1.36665 1.22728 1.23315 0.86633 0.79245 0.79787 0.82183 1.20287 1.21331 1.20281 1.21703 0.98112 0.95749 0.83550 1.46329 1.52541 1.31790 1.06099 1.20544 0.80713 0.84765 0.84983 1.90659 1.38885 1.26935 1.87113 1.21560 1.02272 1.01342 0.92212 1.19928 1.01941 0.97715 0.87197 1.20487 0.98599 0.88780 0.98233 1.26901 1.08798 1.05090 0.98380 1.84026 1.53283 1.02178 1.24937 1.28440 1.00466 1.04731 0.93823 1.66140 1.20772 1.12141 1.18692 0.97493 0.89608 0.95474 0.95448 0.89608 0.97457 0.92956 0.92784 0.92801 0.76693 0.89380 0.88322 0.89229 0.89411 0.80414 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.76 9.35 55.43 0.52 -23.25 16 8 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.83 4.50 -4.05 -0.02 2.81 16 13 N -0.72 -12.88 4.96 -60.30 -0.30 -13.18 16 14 C 0.50 8.65 7.83 -10.99 -0.09 8.57 16 15 O -0.56 -11.45 15.98 5.56 0.09 -11.36 16 16 C -0.13 -1.72 5.60 -27.89 -0.16 -1.87 16 17 C -0.03 -0.33 5.00 -27.88 -0.14 -0.47 16 18 C 0.07 0.78 6.08 -84.22 -0.51 0.27 16 19 C -0.25 -2.29 11.07 29.12 0.32 -1.97 16 20 S 0.10 0.76 23.22 -107.50 -2.50 -1.74 16 21 C 0.02 0.20 12.23 51.58 0.63 0.83 16 22 N -0.46 -5.30 10.34 -11.89 -0.12 -5.42 16 23 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 24 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.40 6.49 6.16 -40.82 -0.25 6.24 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.24 8.08 -51.93 -0.42 0.82 16 35 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.09 1.02 7.98 -51.93 -0.41 0.61 16 37 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.20 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -29.86 325.91 -7.57 -37.43 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.35 Total: 4.74 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 0.20 Total: -7.97 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.10 Total: -41.84 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.50 Total: -1.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.86 -7.57 -37.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468843594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.614 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds