Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46924 * 299.70337 * 3 2 1 5 5 C 1.46902 * 110.99715 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46793 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47475 * 294.99781 * 6 5 4 8 8 N 1.46495 * 109.47430 * 55.00025 * 6 5 4 9 9 C 1.34776 * 120.00573 * 204.99724 * 8 6 5 10 10 O 1.21285 * 119.99717 * 0.02562 * 9 8 6 11 11 C 1.50694 * 120.00347 * 179.97438 * 9 8 6 12 12 S 1.81004 * 109.47261 * 180.02562 * 11 9 8 13 13 C 1.76193 * 100.00254 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99714 * 0.02562 * 13 12 11 15 15 C 1.38793 * 120.00468 * 180.02562 * 13 12 11 16 16 N 1.31635 * 119.99830 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00495 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46813 * 60.00064 * 17 15 13 19 19 H 1.48501 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47210 * 300.00278 * 17 15 13 21 21 C 1.53003 * 109.46999 * 175.00227 * 6 5 4 22 22 C 1.53001 * 117.51964 * 111.28362 * 21 6 5 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 6 24 24 H 4.40887 * 5.52032 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46601 * 179.70470 * 3 2 1 26 26 H 1.08996 * 109.47129 * 59.70499 * 3 2 1 27 27 H 1.00897 * 110.99824 * 303.95498 * 4 3 2 28 28 H 1.08998 * 109.47074 * 60.00187 * 5 4 3 29 29 H 1.08998 * 109.46923 * 300.00070 * 5 4 3 30 30 H 0.97002 * 119.99615 * 24.99601 * 8 6 5 31 31 H 1.08995 * 109.47252 * 300.00380 * 11 9 8 32 32 H 1.09005 * 109.47084 * 60.00526 * 11 9 8 33 33 H 0.97000 * 120.00216 * 180.02562 * 16 15 13 34 34 H 1.09002 * 115.54973 * 325.58146 * 21 6 5 35 35 H 1.09001 * 117.49733 * 214.97413 * 22 21 6 36 36 H 1.08995 * 117.49577 * 359.97438 * 22 21 6 37 37 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 38 38 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.6854 1.2030 5 6 4.6045 -0.7036 1.2374 6 6 5.0761 -1.4241 2.5020 7 1 4.7742 -0.8527 3.3798 8 7 4.4739 -2.7585 2.5572 9 6 4.3119 -3.3762 3.7440 10 8 4.6642 -2.8272 4.7665 11 6 3.6919 -4.7485 3.8008 12 16 3.6115 -5.3036 5.5218 13 6 2.8687 -6.8856 5.2987 14 1 2.6140 -7.2275 4.3064 15 6 2.6107 -7.6925 6.3982 16 7 2.9215 -7.2760 7.6076 17 14 1.8238 -9.3701 6.1616 18 1 2.6945 -10.2078 5.2982 19 1 1.6560 -10.0287 7.4819 20 1 0.4962 -9.2076 5.5165 21 6 6.6004 -1.5532 2.4770 22 6 7.3961 -0.7330 3.4945 23 6 7.2701 -2.2483 3.6642 24 1 -1.0499 0.0001 0.0002 25 1 3.0088 1.0285 -0.0053 26 1 3.0096 -0.5176 -0.8873 27 1 2.7602 -0.2627 2.0386 28 1 4.9805 0.3194 1.2409 29 1 4.9819 -1.2265 0.3586 30 1 4.1917 -3.1974 1.7395 31 1 2.6853 -4.7100 3.3845 32 1 4.2982 -5.4454 3.2220 33 1 2.7416 -7.8400 8.3760 34 1 7.0437 -1.7003 1.4921 35 1 8.3628 -0.3405 3.1789 36 1 6.8336 -0.1010 4.1816 37 1 6.6247 -2.6134 4.4631 38 1 8.1540 -2.8528 3.4602 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498730661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = 42.796368 kcal Electronic energy + Delta-G solvation = -19179.802611 eV Core-core repulsion = 16150.910967 eV Total energy + Delta-G solvation = -3028.891643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71733 -37.42702 -36.47788 -34.05365 -32.65257 -32.38107 -30.05191 -28.20048 -25.69034 -25.37255 -22.62237 -22.15754 -20.79734 -20.11862 -18.56432 -17.72815 -16.62315 -16.33016 -15.87824 -15.36425 -15.11704 -14.76348 -14.65615 -14.42012 -13.89425 -13.74897 -13.11869 -12.96656 -12.75875 -12.46143 -12.04285 -11.82457 -11.44935 -11.17612 -11.00002 -10.98857 -10.75121 -10.72815 -10.50714 -10.28949 -10.11569 -9.76039 -9.25466 -9.01540 -8.79456 -8.65146 -8.17834 -6.43742 -6.17189 -3.86763 2.46803 2.62209 3.09213 3.18625 3.26735 3.30475 3.34329 3.68357 3.90910 4.09423 4.24203 4.25415 4.56561 4.87634 5.01117 5.07997 5.11254 5.15219 5.17736 5.17922 5.29350 5.32045 5.42356 5.70572 5.71613 5.72714 5.87499 5.99715 6.08377 6.19288 6.24708 6.54630 6.56726 6.80417 6.99403 7.39672 7.63956 7.90598 8.39737 8.76178 9.28218 10.90185 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.004053 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.610403 B = 6906.746267 C = 8448.898041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.169 3.831 4 N -0.683 5.683 5 C 0.055 3.945 6 C 0.181 3.819 7 H 0.086 0.914 8 N -0.716 5.716 9 C 0.537 3.463 10 O -0.522 6.522 11 C -0.152 4.152 12 S -0.060 6.060 13 C -0.535 4.535 14 H 0.071 0.929 15 C 0.074 3.926 16 N -0.869 5.869 17 Si 0.917 3.083 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.173 4.173 22 C -0.174 4.174 23 C -0.176 4.176 24 H 0.218 0.782 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.350 0.650 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.401 0.599 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.268 0.732 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 14.975 -16.363 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C 0.041 3.959 4 N -0.315 5.315 5 C -0.074 4.074 6 C 0.075 3.925 7 H 0.104 0.896 8 N -0.369 5.369 9 C 0.323 3.677 10 O -0.398 6.398 11 C -0.303 4.303 12 S 0.167 5.833 13 C -0.683 4.683 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.504 5.504 17 Si 0.744 3.256 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.193 4.193 22 C -0.212 4.212 23 C -0.213 4.213 24 H 0.234 0.766 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.168 0.832 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.235 0.765 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.143 0.857 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.796 15.226 -14.745 21.533 hybrid contribution -1.021 -1.032 -1.607 2.165 sum 2.775 14.194 -16.352 21.831 Atomic orbital electron populations 1.24964 0.96004 1.00691 0.99109 1.22862 0.94290 1.00501 1.01492 1.18818 0.84782 0.97381 0.94900 1.60376 1.07714 1.58619 1.04762 1.22246 0.87187 0.99423 0.98589 1.20371 0.89704 0.84645 0.97794 0.89586 1.45831 1.63935 1.17857 1.09261 1.20213 0.77490 0.86957 0.83005 1.90615 1.49160 1.66286 1.33755 1.23516 1.03048 0.95627 1.08106 1.85319 1.80870 1.19557 0.97584 1.22843 1.46806 1.02745 0.95942 0.91046 1.24972 0.95412 0.98681 0.94445 1.70011 1.44964 1.37326 0.98110 0.86247 0.79613 0.82242 0.77538 1.19966 1.20847 1.19955 1.22624 0.93936 1.07407 0.95319 1.22904 1.00989 0.95144 1.02140 1.23332 1.02771 0.94332 1.00852 0.76560 0.92923 0.88729 0.83174 0.93405 0.90074 0.76497 0.89312 0.89449 0.92200 0.88107 0.89274 0.88842 0.85678 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 19.25 29.55 0.57 -1.20 16 2 C -0.19 -1.91 13.60 -37.12 -0.50 -2.41 16 3 C 0.17 1.34 6.16 -6.61 -0.04 1.30 16 4 N -0.68 -6.27 6.20 -116.89 -0.72 -7.00 16 5 C 0.05 0.45 5.22 -3.82 -0.02 0.43 16 6 C 0.18 2.04 2.51 -67.93 -0.17 1.87 16 7 H 0.09 1.15 7.34 -51.93 -0.38 0.77 16 8 N -0.72 -9.56 4.78 -53.81 -0.26 -9.82 16 9 C 0.54 9.84 7.18 -10.99 -0.08 9.76 16 10 O -0.52 -11.27 12.89 5.55 0.07 -11.20 16 11 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 12 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 13 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 14 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 15 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 16 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 17 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 C -0.17 -1.90 5.36 -90.61 -0.49 -2.39 16 22 C -0.17 -1.93 10.18 -26.73 -0.27 -2.20 16 23 C -0.18 -2.42 9.73 -26.73 -0.26 -2.68 16 24 H 0.22 1.33 7.80 -54.10 -0.42 0.91 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.35 3.48 8.71 -39.29 -0.34 3.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.40 4.65 8.60 -40.82 -0.35 4.30 16 31 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 37 H 0.13 2.21 5.02 -51.93 -0.26 1.95 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -33.69 343.77 -8.60 -42.28 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.52 Total: 6.95 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.84 Total: -13.51 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.25 Total: -42.47 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.69 -8.60 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498730661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.080 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds