Wall clock time and date at job start Tue Mar 31 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46924 * 299.70337 * 3 2 1 5 5 C 1.46902 * 110.99715 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46793 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47475 * 294.99781 * 6 5 4 8 8 N 1.46495 * 109.47430 * 55.00025 * 6 5 4 9 9 C 1.34776 * 120.00573 * 204.99724 * 8 6 5 10 10 O 1.21285 * 119.99717 * 0.02562 * 9 8 6 11 11 C 1.50694 * 120.00347 * 179.97438 * 9 8 6 12 12 S 1.81004 * 109.47261 * 180.02562 * 11 9 8 13 13 C 1.76193 * 100.00254 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99714 * 0.02562 * 13 12 11 15 15 C 1.38793 * 120.00468 * 180.02562 * 13 12 11 16 16 N 1.31635 * 119.99830 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00495 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46813 * 60.00064 * 17 15 13 19 19 H 1.48501 * 109.47194 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47210 * 300.00278 * 17 15 13 21 21 C 1.53003 * 109.46999 * 175.00227 * 6 5 4 22 22 C 1.53001 * 117.51964 * 111.28362 * 21 6 5 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 6 24 24 H 4.40887 * 5.52032 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46601 * 179.70470 * 3 2 1 26 26 H 1.08996 * 109.47129 * 59.70499 * 3 2 1 27 27 H 1.00897 * 110.99824 * 303.95498 * 4 3 2 28 28 H 1.08998 * 109.47074 * 60.00187 * 5 4 3 29 29 H 1.08998 * 109.46923 * 300.00070 * 5 4 3 30 30 H 0.97002 * 119.99615 * 24.99601 * 8 6 5 31 31 H 1.08995 * 109.47252 * 300.00380 * 11 9 8 32 32 H 1.09005 * 109.47084 * 60.00526 * 11 9 8 33 33 H 0.97000 * 120.00216 * 180.02562 * 16 15 13 34 34 H 1.09002 * 115.54973 * 325.58146 * 21 6 5 35 35 H 1.09001 * 117.49733 * 214.97413 * 22 21 6 36 36 H 1.08995 * 117.49577 * 359.97438 * 22 21 6 37 37 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 38 38 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.6854 1.2030 5 6 4.6045 -0.7036 1.2374 6 6 5.0761 -1.4241 2.5020 7 1 4.7742 -0.8527 3.3798 8 7 4.4739 -2.7585 2.5572 9 6 4.3119 -3.3762 3.7440 10 8 4.6642 -2.8272 4.7665 11 6 3.6919 -4.7485 3.8008 12 16 3.6115 -5.3036 5.5218 13 6 2.8687 -6.8856 5.2987 14 1 2.6140 -7.2275 4.3064 15 6 2.6107 -7.6925 6.3982 16 7 2.9215 -7.2760 7.6076 17 14 1.8238 -9.3701 6.1616 18 1 2.6945 -10.2078 5.2982 19 1 1.6560 -10.0287 7.4819 20 1 0.4962 -9.2076 5.5165 21 6 6.6004 -1.5532 2.4770 22 6 7.3961 -0.7330 3.4945 23 6 7.2701 -2.2483 3.6642 24 1 -1.0499 0.0001 0.0002 25 1 3.0088 1.0285 -0.0053 26 1 3.0096 -0.5176 -0.8873 27 1 2.7602 -0.2627 2.0386 28 1 4.9805 0.3194 1.2409 29 1 4.9819 -1.2265 0.3586 30 1 4.1917 -3.1974 1.7395 31 1 2.6853 -4.7100 3.3845 32 1 4.2982 -5.4454 3.2220 33 1 2.7416 -7.8400 8.3760 34 1 7.0437 -1.7003 1.4921 35 1 8.3628 -0.3405 3.1789 36 1 6.8336 -0.1010 4.1816 37 1 6.6247 -2.6134 4.4631 38 1 8.1540 -2.8528 3.4602 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498730661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:01 Heat of formation + Delta-G solvation = 18.855456 kcal Electronic energy + Delta-G solvation = -19180.840767 eV Core-core repulsion = 16150.910967 eV Total energy + Delta-G solvation = -3029.929799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95958 -38.52047 -37.26221 -35.12898 -34.57065 -33.51639 -31.32579 -29.37656 -27.64228 -26.38829 -23.40107 -23.11167 -22.02018 -21.26844 -19.81496 -19.17254 -17.88476 -17.39310 -16.98296 -16.86617 -16.40189 -16.14999 -15.84816 -15.43770 -15.17769 -14.83429 -14.57700 -14.41774 -13.69177 -13.51739 -13.38057 -13.15438 -12.86612 -12.83355 -12.61370 -12.32333 -12.23592 -11.72590 -11.47042 -11.26319 -11.18159 -11.11680 -11.05939 -10.72035 -10.25217 -9.87547 -9.43396 -8.63258 -8.33277 -6.10424 1.29111 1.44038 1.47895 1.58664 1.72276 1.77214 1.92755 2.27507 2.33689 3.00531 3.02099 3.22059 3.36976 3.61052 3.76045 3.98679 4.07622 4.16796 4.30608 4.31783 4.35785 4.45426 4.54542 4.55280 4.65335 4.71499 4.84742 4.96211 5.08541 5.12250 5.29989 5.42361 5.43258 5.63030 5.95648 6.20683 6.25196 6.67259 6.71732 7.07914 7.40377 8.75663 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.004053 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.610403 B = 6906.746267 C = 8448.898041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.218 4.218 3 C 0.170 3.830 4 N -0.697 5.697 5 C 0.066 3.934 6 C 0.179 3.821 7 H 0.062 0.938 8 N -0.692 5.692 9 C 0.537 3.463 10 O -0.560 6.560 11 C -0.129 4.129 12 S -0.145 6.145 13 C -0.549 4.549 14 H 0.080 0.920 15 C 0.015 3.985 16 N -0.911 5.911 17 Si 0.997 3.003 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.208 4.208 24 H 0.238 0.762 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.342 0.658 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.414 0.586 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.271 0.729 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 15.148 -19.397 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.218 4.218 3 C 0.043 3.957 4 N -0.328 5.328 5 C -0.063 4.063 6 C 0.074 3.926 7 H 0.080 0.920 8 N -0.344 5.344 9 C 0.323 3.677 10 O -0.439 6.439 11 C -0.280 4.280 12 S 0.082 5.918 13 C -0.697 4.697 14 H 0.098 0.902 15 C -0.190 4.190 16 N -0.548 5.548 17 Si 0.818 3.182 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.174 4.174 22 C -0.197 4.197 23 C -0.245 4.245 24 H 0.255 0.745 25 H 0.088 0.912 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.846 15.422 -17.840 23.894 hybrid contribution -1.020 -0.981 -0.719 1.587 sum 2.826 14.441 -18.560 23.686 Atomic orbital electron populations 1.25715 0.97067 1.00413 0.98700 1.23550 0.95458 1.00892 1.01932 1.18933 0.83727 0.98443 0.94628 1.60386 1.08281 1.59212 1.04957 1.22193 0.86717 1.00259 0.97106 1.20553 0.90113 0.83089 0.98879 0.92029 1.45600 1.62469 1.18370 1.07950 1.19863 0.77526 0.86287 0.83991 1.90623 1.50903 1.66904 1.35454 1.23357 1.04427 0.97321 1.02932 1.85468 1.81246 1.20519 1.04569 1.23188 1.46922 1.03025 0.96575 0.90219 1.26096 0.95731 1.03245 0.93893 1.70177 1.46255 1.39160 0.99180 0.85033 0.78867 0.76440 0.77844 1.18677 1.20272 1.18736 1.22709 0.93420 1.05550 0.95767 1.22955 1.02062 0.93074 1.01560 1.23160 1.03179 0.96500 1.01693 0.74526 0.91231 0.87344 0.84053 0.91270 0.87962 0.74988 0.88071 0.87879 0.92008 0.85135 0.86673 0.89756 0.89969 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.49 19.25 74.32 1.43 -2.06 16 2 C -0.22 -4.01 13.60 31.13 0.42 -3.59 16 3 C 0.17 2.25 6.16 84.50 0.52 2.78 16 4 N -0.70 -11.19 6.20 -523.72 -3.25 -14.43 16 5 C 0.07 0.85 5.22 86.30 0.45 1.30 16 6 C 0.18 3.72 2.51 44.99 0.11 3.84 16 7 H 0.06 1.64 7.34 -2.38 -0.02 1.62 16 8 N -0.69 -17.58 4.78 -442.54 -2.12 -19.70 16 9 C 0.54 19.90 7.18 87.66 0.63 20.53 16 10 O -0.56 -25.26 12.89 -3.05 -0.04 -25.30 16 11 C -0.13 -5.31 6.16 71.23 0.44 -4.87 16 12 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 13 C -0.55 -32.04 9.50 67.95 0.65 -31.39 16 14 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 15 C 0.02 0.87 5.49 84.86 0.47 1.34 16 16 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 17 Si 1.00 44.26 29.55 68.60 2.03 46.28 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 C -0.15 -3.05 5.36 -10.79 -0.06 -3.11 16 22 C -0.16 -3.28 10.18 30.59 0.31 -2.97 16 23 C -0.21 -5.71 9.73 30.60 0.30 -5.41 16 24 H 0.24 2.59 7.80 -4.42 -0.03 2.55 16 25 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.34 6.37 8.71 -89.70 -0.78 5.59 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.41 8.56 8.60 -92.71 -0.80 7.77 16 31 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 32 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.13 1.87 8.11 -2.39 -0.02 1.85 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 37 H 0.08 3.07 5.02 -2.39 -0.01 3.06 16 38 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -76.67 343.77 0.91 -75.76 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -0.51 Total: 26.76 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 5.67 Total: -23.62 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -5.08 Total: -90.53 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.30 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -76.67 0.91 -75.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498730661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.615 kcal (2) G-P(sol) polarization free energy of solvation -76.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds