Wall clock time and date at job start Tue Mar 31 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46906 * 109.46850 * 246.78994 * 3 2 1 5 5 C 1.46902 * 110.99573 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47232 * 65.00308 * 6 5 4 8 8 N 1.46503 * 109.47059 * 304.99837 * 6 5 4 9 9 C 1.34774 * 119.99681 * 155.00160 * 8 6 5 10 10 O 1.21286 * 120.00037 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00128 * 179.97438 * 9 8 6 12 12 S 1.81002 * 109.47451 * 179.97438 * 11 9 8 13 13 C 1.76202 * 99.99999 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99896 * 0.02562 * 13 12 11 15 15 C 1.38793 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31628 * 120.00282 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99738 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47182 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47002 * 120.00623 * 17 15 13 20 20 H 1.48502 * 109.47149 * 239.99955 * 17 15 13 21 21 C 1.53008 * 109.46744 * 185.00131 * 6 5 4 22 22 C 1.53004 * 117.49497 * 248.74555 * 21 6 5 23 23 C 1.52998 * 117.49336 * 180.08917 * 21 6 5 24 24 H 4.40890 * 5.52222 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46929 * 126.79439 * 3 2 1 26 26 H 1.09000 * 109.47374 * 6.79080 * 3 2 1 27 27 H 1.00896 * 111.00309 * 56.04736 * 4 3 2 28 28 H 1.08990 * 109.47358 * 299.99539 * 5 4 3 29 29 H 1.09004 * 109.47457 * 60.00221 * 5 4 3 30 30 H 0.96998 * 120.00224 * 335.00326 * 8 6 5 31 31 H 1.09002 * 109.47034 * 300.00211 * 11 9 8 32 32 H 1.09004 * 109.46903 * 59.99649 * 11 9 8 33 33 H 0.97001 * 120.00126 * 179.97438 * 16 15 13 34 34 H 1.09003 * 115.55076 * 34.41449 * 21 6 5 35 35 H 1.08998 * 117.49672 * 0.02562 * 22 21 6 36 36 H 1.09000 * 117.49312 * 145.02299 * 22 21 6 37 37 H 1.09007 * 117.49333 * 214.97428 * 23 21 6 38 38 H 1.09001 * 117.50450 * 359.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1353 0.5467 1.2730 5 6 4.6038 0.5634 1.3087 6 6 5.0748 1.1379 2.6463 7 1 4.7743 0.4708 3.4543 8 7 4.4705 2.4566 2.8514 9 6 4.3080 2.9365 4.1002 10 8 4.6625 2.2769 5.0543 11 6 3.6869 4.2932 4.3112 12 16 3.6060 4.6508 6.0837 13 6 2.8604 6.2468 6.0402 14 1 2.6042 6.6974 5.0927 15 6 2.6015 6.9242 7.2236 16 7 2.9133 6.3747 8.3783 17 14 1.8104 8.6158 7.1775 18 1 1.5596 9.0067 5.7670 19 1 0.5234 8.5807 7.9174 20 1 2.7190 9.6046 7.8116 21 6 6.5990 1.2715 2.6356 22 6 7.3960 0.3426 3.5537 23 6 7.2680 1.8297 3.8932 24 1 -1.0502 0.0001 -0.0003 25 1 3.0090 0.6164 -0.8230 26 1 3.0098 -1.0196 -0.1215 27 1 2.7601 0.0319 2.0554 28 1 4.9815 -0.4528 1.1962 29 1 4.9801 1.1832 0.4948 30 1 4.1872 2.9843 2.0883 31 1 4.2925 5.0513 3.8145 32 1 2.6803 4.3010 3.8931 33 1 2.7327 6.8484 9.2053 34 1 7.0416 1.5291 1.6733 35 1 6.8345 -0.3638 4.1651 36 1 8.3631 -0.0104 3.1957 37 1 8.1511 2.4545 3.7583 38 1 6.6224 2.1023 4.7280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498730662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:04 Heat of formation + Delta-G solvation = 42.744391 kcal Electronic energy + Delta-G solvation = -19180.029202 eV Core-core repulsion = 16151.135305 eV Total energy + Delta-G solvation = -3028.893897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71640 -37.42564 -36.47475 -34.05232 -32.65262 -32.38501 -30.05092 -28.20020 -25.69054 -25.37664 -22.62231 -22.16057 -20.79627 -20.11870 -18.56305 -17.73080 -16.62303 -16.33019 -15.87802 -15.36452 -15.11693 -14.76713 -14.65679 -14.42019 -13.89662 -13.74904 -13.11834 -12.96884 -12.75929 -12.46494 -12.04274 -11.82392 -11.44839 -11.17815 -11.03296 -10.96524 -10.74934 -10.72017 -10.50725 -10.28829 -10.11416 -9.74422 -9.25494 -9.03340 -8.79388 -8.65165 -8.17146 -6.43881 -6.17787 -3.87100 2.46826 2.62248 3.09205 3.18579 3.24397 3.31078 3.35979 3.68421 3.90927 4.09315 4.24163 4.24890 4.56495 4.87686 5.01135 5.08019 5.11098 5.15219 5.17592 5.17730 5.29321 5.32020 5.42299 5.70487 5.71518 5.72719 5.87481 5.99653 6.08393 6.19255 6.24669 6.54644 6.56774 6.80381 6.99487 7.39683 7.64356 7.90591 8.39914 8.76157 9.28005 10.89700 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.004054 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.836673 B = 6905.830564 C = 8448.584413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.169 3.831 4 N -0.683 5.683 5 C 0.055 3.945 6 C 0.181 3.819 7 H 0.086 0.914 8 N -0.716 5.716 9 C 0.537 3.463 10 O -0.522 6.522 11 C -0.152 4.152 12 S -0.061 6.061 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.917 3.083 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.173 4.173 22 C -0.174 4.174 23 C -0.176 4.176 24 H 0.218 0.782 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.350 0.650 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.401 0.599 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.267 0.733 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 -13.035 -17.969 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C 0.041 3.959 4 N -0.315 5.315 5 C -0.074 4.074 6 C 0.075 3.925 7 H 0.104 0.896 8 N -0.369 5.369 9 C 0.323 3.677 10 O -0.398 6.398 11 C -0.303 4.303 12 S 0.166 5.834 13 C -0.682 4.682 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.504 5.504 17 Si 0.744 3.256 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.193 4.193 22 C -0.212 4.212 23 C -0.213 4.213 24 H 0.234 0.766 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.168 0.832 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.235 0.765 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.812 -13.466 -16.400 21.560 hybrid contribution -1.022 1.199 -1.461 2.149 sum 2.790 -12.267 -17.861 21.846 Atomic orbital electron populations 1.24969 0.96007 1.00825 0.98969 1.22859 0.94291 1.00469 1.01528 1.18817 0.84785 0.98629 0.93645 1.60362 1.07764 1.59455 1.03910 1.22247 0.87176 1.00075 0.97939 1.20375 0.89686 0.85773 0.96683 0.89586 1.45831 1.63842 1.18936 1.08272 1.20215 0.77512 0.87516 0.82426 1.90615 1.49133 1.59422 1.40645 1.23516 1.03048 0.95862 1.07857 1.85328 1.80760 1.22338 0.94990 1.22925 1.46492 1.03244 0.95528 0.90940 1.24976 0.95440 0.98584 0.94566 1.70029 1.45073 1.37843 0.97440 0.86137 0.78852 0.82351 0.78283 1.19623 1.20605 1.20602 1.22625 0.93930 1.06875 0.95843 1.22916 1.00976 0.94165 1.03131 1.23342 1.02776 0.95423 0.99745 0.76553 0.88730 0.92924 0.83166 0.93401 0.90080 0.76495 0.89445 0.89314 0.92312 0.88108 0.88840 0.89274 0.89516 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 19.25 29.55 0.57 -1.20 16 2 C -0.19 -1.91 13.60 -37.12 -0.50 -2.41 16 3 C 0.17 1.34 6.16 -6.61 -0.04 1.30 16 4 N -0.68 -6.27 6.20 -116.88 -0.72 -7.00 16 5 C 0.06 0.45 5.23 -3.82 -0.02 0.43 16 6 C 0.18 2.04 2.51 -67.92 -0.17 1.87 16 7 H 0.09 1.15 7.34 -51.93 -0.38 0.77 16 8 N -0.72 -9.56 4.78 -53.80 -0.26 -9.82 16 9 C 0.54 9.83 7.18 -10.99 -0.08 9.76 16 10 O -0.52 -11.27 12.89 5.55 0.07 -11.20 16 11 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 12 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 13 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 14 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 16 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 17 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.17 -1.90 5.36 -90.61 -0.49 -2.39 16 22 C -0.17 -1.93 10.18 -26.69 -0.27 -2.20 16 23 C -0.18 -2.42 9.73 -26.69 -0.26 -2.68 16 24 H 0.22 1.33 7.80 -54.08 -0.42 0.91 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.35 3.48 8.71 -39.29 -0.34 3.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.40 4.65 8.60 -40.82 -0.35 4.30 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 32 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.09 1.07 8.05 -51.93 -0.42 0.66 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.13 2.21 5.02 -51.93 -0.26 1.95 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -33.72 343.78 -8.60 -42.32 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.52 Total: 6.88 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.84 Total: -13.48 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.25 Total: -42.44 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.72 -8.60 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498730662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.063 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds