Wall clock time and date at job start Tue Mar 31 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46904 * 111.00095 * 179.97438 * 5 4 3 7 7 H 1.08999 * 110.63810 * 36.68991 * 6 5 4 8 8 C 1.55155 * 110.71796 * 160.02466 * 6 5 4 9 9 C 1.54908 * 101.57996 * 153.86923 * 8 6 5 10 10 N 1.47427 * 104.83423 * 322.98987 * 9 8 6 11 11 C 1.34775 * 125.65173 * 204.16463 * 10 9 8 12 12 O 1.21278 * 120.00209 * 179.97438 * 11 10 9 13 13 C 1.50705 * 119.99859 * 359.96101 * 11 10 9 14 14 S 1.80996 * 109.47160 * 180.02562 * 13 11 10 15 15 C 1.76193 * 100.00023 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.38803 * 120.00104 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99642 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47405 * 59.99952 * 19 17 15 21 21 H 1.48504 * 109.47269 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47176 * 299.99690 * 19 17 15 23 23 C 1.47019 * 108.69910 * 24.12976 * 10 9 8 24 24 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 28 28 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 29 29 H 1.00892 * 111.00273 * 303.95598 * 5 4 3 30 30 H 1.09005 * 111.00851 * 271.94204 * 8 6 5 31 31 H 1.08996 * 111.00839 * 35.79405 * 8 6 5 32 32 H 1.08999 * 110.36666 * 204.14905 * 9 8 6 33 33 H 1.09002 * 110.46153 * 81.87899 * 9 8 6 34 34 H 1.09000 * 109.46604 * 299.99535 * 13 11 10 35 35 H 1.08993 * 109.47328 * 59.99270 * 13 11 10 36 36 H 0.97007 * 119.99912 * 180.02562 * 18 17 15 37 37 H 1.09005 * 109.88072 * 239.52394 * 23 10 9 38 38 H 1.08997 * 110.01389 * 118.43597 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1527 -2.7671 -0.5013 7 1 4.5267 -3.3007 -1.2166 8 6 6.6225 -2.7015 -0.9940 9 6 7.1650 -4.0791 -0.5382 10 7 6.5147 -4.3297 0.7610 11 6 6.9872 -5.1341 1.7337 12 8 6.3659 -5.2658 2.7669 13 6 8.2875 -5.8702 1.5374 14 16 8.6484 -6.8603 3.0089 15 6 10.1747 -7.5917 2.5188 16 1 10.5958 -7.3651 1.5504 17 6 10.8354 -8.4599 3.3768 18 7 10.3219 -8.7365 4.5569 19 14 12.4538 -9.2347 2.8575 20 1 13.4506 -8.1669 2.5902 21 1 12.9522 -10.1155 3.9443 22 1 12.2457 -10.0372 1.6256 23 6 5.2659 -3.5561 0.8201 24 1 -1.0498 -0.0004 0.0001 25 1 3.0090 0.6649 -0.7843 26 1 3.0092 0.3479 0.9672 27 1 2.7936 -2.0829 0.5272 28 1 2.7934 -1.7658 -1.2243 29 1 4.9866 -0.7608 -0.9329 30 1 6.6670 -2.6036 -2.0787 31 1 7.1618 -1.8888 -0.5075 32 1 8.2477 -4.0399 -0.4192 33 1 6.8907 -4.8529 -1.2552 34 1 8.2067 -6.5254 0.6700 35 1 9.0911 -5.1517 1.3763 36 1 10.7839 -9.3430 5.1568 37 1 5.2973 -2.8653 1.6627 38 1 4.4148 -4.2290 0.9242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731430780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:29 Heat of formation + Delta-G solvation = 19.143406 kcal Electronic energy + Delta-G solvation = -18777.551675 eV Core-core repulsion = 15747.634362 eV Total energy + Delta-G solvation = -3029.917313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86548 -37.86630 -36.13427 -33.88385 -32.41333 -31.31725 -29.65783 -29.32971 -27.09113 -25.45267 -23.82050 -22.48937 -20.99139 -19.29221 -18.42445 -17.68636 -16.96363 -16.52342 -15.82814 -15.22750 -15.08701 -14.78859 -14.76291 -14.27444 -13.86096 -13.65265 -13.46315 -13.00178 -12.81232 -12.52695 -12.36798 -12.14637 -11.76747 -11.73973 -11.45290 -11.05548 -11.02514 -11.01769 -10.75951 -10.54229 -10.45202 -9.81016 -9.38583 -9.04434 -8.90508 -8.45809 -8.21419 -6.48374 -6.19786 -3.90452 2.43265 2.50823 2.91062 3.11008 3.24478 3.26305 3.30037 3.56200 3.72666 4.14923 4.22122 4.27178 4.40704 4.69068 4.77524 4.85991 5.03558 5.09381 5.13004 5.15100 5.23780 5.46528 5.49859 5.52416 5.56216 5.63426 5.68912 5.73057 5.81578 5.93278 5.95411 6.15545 6.46309 6.61004 6.93015 7.27864 7.60594 7.70891 8.36548 8.60404 9.25070 10.87580 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.045080 B = 0.002658 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.964281 B =10530.513938 C =11023.885521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C -0.011 4.011 4 C 0.063 3.937 5 N -0.679 5.679 6 C 0.075 3.925 7 H 0.062 0.938 8 C -0.133 4.133 9 C 0.103 3.897 10 N -0.625 5.625 11 C 0.548 3.452 12 O -0.515 6.515 13 C -0.146 4.146 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.118 3.882 24 H 0.217 0.783 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.035 0.965 29 H 0.346 0.654 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.079 0.921 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.517 16.645 -15.354 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.187 4.187 3 C -0.048 4.048 4 C -0.067 4.067 5 N -0.311 5.311 6 C -0.035 4.035 7 H 0.080 0.920 8 C -0.172 4.172 9 C -0.021 4.021 10 N -0.363 5.363 11 C 0.336 3.664 12 O -0.389 6.389 13 C -0.297 4.297 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.006 4.006 24 H 0.234 0.766 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.165 0.835 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.331 16.227 -12.882 24.637 hybrid contribution 1.315 -0.439 -2.542 2.895 sum -12.017 15.788 -15.424 25.130 Atomic orbital electron populations 1.24931 0.96017 1.00293 1.01285 1.23016 0.94475 1.00834 1.00370 1.18654 0.84515 0.97546 1.04107 1.21949 0.87415 0.96380 1.00921 1.60319 1.07060 1.07369 1.56357 1.22535 0.95540 0.89476 0.95964 0.92001 1.22962 0.94860 0.98137 1.01205 1.22237 0.98698 0.95925 0.85238 1.48439 1.23688 1.47221 1.16999 1.20023 0.86549 0.77908 0.81888 1.90710 1.59256 1.62529 1.26398 1.23502 0.96115 1.02546 1.07498 1.85413 1.28522 1.53876 1.15578 1.22819 1.07902 1.32254 1.05386 0.90986 1.24997 0.98313 0.95771 0.94533 1.70014 1.38723 1.33973 1.07557 0.86221 0.82000 0.78991 0.78257 1.19938 1.20817 1.19953 1.21816 0.86894 0.94067 0.97782 0.76643 0.89674 0.88421 0.90176 0.94634 0.83503 0.89923 0.89347 0.90011 0.91350 0.89342 0.89291 0.92132 0.90286 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.19 -1.57 13.34 -37.12 -0.50 -2.06 16 3 C -0.01 -0.08 5.96 -29.52 -0.18 -0.25 16 4 C 0.06 0.45 5.49 -3.83 -0.02 0.43 16 5 N -0.68 -5.02 6.29 -104.79 -0.66 -5.68 16 6 C 0.08 0.65 3.24 -65.88 -0.21 0.43 16 7 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 8 C -0.13 -1.02 6.52 -24.58 -0.16 -1.18 16 9 C 0.10 1.08 6.69 -2.53 -0.02 1.07 16 10 N -0.63 -9.35 3.33 -170.52 -0.57 -9.91 16 11 C 0.55 10.96 7.87 -10.98 -0.09 10.87 16 12 O -0.51 -12.42 16.19 5.56 0.09 -12.33 16 13 C -0.15 -3.05 5.16 36.01 0.19 -2.87 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 16 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 19 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.12 1.52 6.55 -3.07 -0.02 1.50 16 24 H 0.22 0.95 7.80 -54.10 -0.42 0.53 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.35 1.87 8.50 -39.30 -0.33 1.54 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 35 H 0.09 1.72 7.85 -51.92 -0.41 1.31 16 36 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -35.30 342.42 -8.44 -43.74 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.72 Total: -1.77 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.24 Total: -6.16 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.49 Total: -41.23 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.30 -8.44 -43.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731430780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.885 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds