Wall clock time and date at job start Tue Mar 31 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33813 * 122.45392 * 2 1 4 4 S 1.70615 * 110.95643 * 179.74717 * 3 2 1 5 5 C 1.75830 * 91.56366 * 0.35272 * 4 3 2 6 6 C 1.46581 * 125.45747 * 179.91111 * 5 4 3 7 7 O 1.21704 * 120.00010 * 172.28355 * 6 5 4 8 8 N 1.34770 * 120.00067 * 352.28995 * 6 5 4 9 9 C 1.46494 * 120.00212 * 353.97254 * 8 6 5 10 10 C 1.46503 * 119.99869 * 173.70283 * 8 6 5 11 11 H 1.08996 * 109.47259 * 359.97438 * 10 8 6 12 12 C 1.53003 * 109.47149 * 119.99622 * 10 8 6 13 13 C 1.53000 * 109.47127 * 239.99562 * 10 8 6 14 14 N 1.46501 * 109.47071 * 54.99933 * 13 10 8 15 15 C 1.36938 * 120.00163 * 180.02562 * 14 13 10 16 16 H 1.07995 * 120.00023 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00294 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47234 * 90.00155 * 19 17 15 21 21 H 1.48504 * 109.47168 * 209.99575 * 19 17 15 22 22 H 1.48502 * 109.47248 * 329.99908 * 19 17 15 23 23 C 1.36650 * 109.08145 * 359.65289 * 5 4 3 24 24 H 1.09004 * 109.46802 * 269.98037 * 1 2 3 25 25 H 1.09004 * 109.47251 * 29.97452 * 1 2 3 26 26 H 1.08992 * 109.47671 * 149.98128 * 1 2 3 27 27 H 1.08007 * 124.52071 * 0.05209 * 3 2 1 28 28 H 1.08998 * 109.47298 * 84.02296 * 9 8 6 29 29 H 1.09010 * 109.47251 * 204.02025 * 9 8 6 30 30 H 1.09005 * 109.47457 * 324.01828 * 9 8 6 31 31 H 1.09006 * 109.46818 * 180.02562 * 12 10 8 32 32 H 1.09001 * 109.47229 * 299.99527 * 12 10 8 33 33 H 1.09002 * 109.47241 * 60.00195 * 12 10 8 34 34 H 1.09000 * 109.47597 * 174.99833 * 13 10 8 35 35 H 1.09002 * 109.47259 * 295.00391 * 13 10 8 36 36 H 0.97000 * 119.99743 * 359.97438 * 14 13 10 37 37 H 0.96991 * 119.99993 * 180.02562 * 18 17 15 38 38 H 1.07999 * 123.35184 * 180.29016 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1291 0.0000 4 16 3.8969 0.7891 0.0070 5 6 3.5936 -0.9429 -0.0008 6 6 4.6230 -1.9864 -0.0014 7 8 4.3064 -3.1536 0.1344 8 7 5.9202 -1.6533 -0.1522 9 6 6.2910 -0.2671 -0.4473 10 6 6.9599 -2.6763 -0.0153 11 1 6.4967 -3.6375 0.2074 12 6 7.7484 -2.7802 -1.3223 13 6 7.9073 -2.2914 1.1227 14 7 7.1353 -2.0753 2.3489 15 6 7.7743 -1.7192 3.5065 16 1 8.8474 -1.5981 3.5157 17 6 7.0429 -1.5150 4.6685 18 7 5.7351 -1.6631 4.6575 19 14 7.9147 -1.0299 6.2477 20 1 7.9954 0.4503 6.3341 21 1 7.1563 -1.5530 7.4125 22 1 9.2853 -1.6015 6.2523 23 6 2.2445 -1.1601 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 1.8026 2.1232 0.0008 28 1 6.3459 0.3000 0.4820 29 1 7.2620 -0.2481 -0.9424 30 1 5.5411 0.1784 -1.1011 31 1 8.5217 -3.5418 -1.2205 32 1 7.0734 -3.0545 -2.1331 33 1 8.2117 -1.8189 -1.5446 34 1 8.6272 -3.0940 1.2834 35 1 8.4368 -1.3754 0.8606 36 1 6.1715 -2.1837 2.3406 37 1 5.2239 -1.5200 5.4693 38 1 1.8018 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753690974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:00 Heat of formation + Delta-G solvation = 13.126408 kcal Electronic energy + Delta-G solvation = -20383.493821 eV Core-core repulsion = 17353.315591 eV Total energy + Delta-G solvation = -3030.178229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74074 -37.98700 -36.21485 -34.02061 -32.20226 -30.62756 -29.93792 -27.68112 -26.83482 -25.63798 -24.42546 -22.52360 -20.88561 -19.18972 -18.83129 -17.70215 -17.04755 -16.18478 -15.66328 -15.20593 -14.81083 -14.40788 -13.85921 -13.63335 -13.38174 -13.23180 -13.00847 -12.88917 -12.70315 -12.31873 -12.22921 -12.05377 -11.92362 -11.76941 -11.69333 -11.45392 -10.82588 -10.76532 -10.47324 -10.35382 -10.03185 -9.67649 -9.60021 -8.85064 -8.68230 -8.29285 -8.07947 -6.87838 -5.70201 -3.00250 0.77122 1.72891 2.16902 2.56052 3.25586 3.45161 3.50109 3.52506 3.57707 4.61058 4.77676 5.06507 5.14061 5.23523 5.31688 5.38274 5.42222 5.56530 5.62608 5.62804 5.64434 5.67461 5.88837 5.93076 6.02492 6.06214 6.14151 6.19094 6.38082 6.45720 6.49211 6.57168 6.73425 6.97901 7.67791 7.72680 8.46655 8.49827 9.58056 10.16451 10.51564 11.51663 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.006173 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.164143 B = 4535.060971 C = 5637.831860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.119 4.119 3 C -0.271 4.271 4 S 0.234 5.766 5 C -0.251 4.251 6 C 0.593 3.407 7 O -0.532 6.532 8 N -0.592 5.592 9 C 0.064 3.936 10 C 0.127 3.873 11 H 0.102 0.898 12 C -0.155 4.155 13 C 0.143 3.857 14 N -0.728 5.728 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.927 5.927 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.060 4.060 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.160 0.840 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.021 0.979 36 H 0.386 0.614 37 H 0.254 0.746 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 6.086 -14.893 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.408 4.408 4 S 0.505 5.495 5 C -0.371 4.371 6 C 0.381 3.619 7 O -0.410 6.410 8 N -0.325 5.325 9 C -0.081 4.081 10 C 0.024 3.976 11 H 0.120 0.880 12 C -0.214 4.214 13 C 0.015 3.985 14 N -0.373 5.373 15 C -0.373 4.373 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.094 4.094 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.177 0.823 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.375 6.439 -14.683 16.384 hybrid contribution -1.226 -0.352 1.140 1.711 sum -4.601 6.086 -13.543 15.544 Atomic orbital electron populations 1.20487 0.90058 1.02311 1.02258 1.18676 0.97524 0.91656 1.05323 1.25600 1.01941 1.02867 1.10360 1.83524 1.01123 0.98358 1.66537 1.24583 0.97937 0.97180 1.17401 1.16903 0.81469 0.87210 0.76279 1.90796 1.81151 1.18718 1.50379 1.47466 1.05414 1.09468 1.70108 1.21912 1.01542 0.82688 1.01992 1.21443 0.88334 0.92528 0.95254 0.87980 1.22071 1.00202 1.02170 0.96948 1.21026 0.93122 0.97756 0.86613 1.42308 1.06775 1.83488 1.04739 1.19191 0.91752 1.38898 0.87443 0.91269 1.24754 0.95514 1.02676 0.97896 1.69695 1.04588 1.55675 1.27600 0.86218 0.78442 0.78044 0.83633 1.21807 1.21820 1.20804 1.20556 0.91135 0.99718 0.97965 0.91315 0.91902 0.91603 0.82258 0.90818 0.89445 0.91202 0.91233 0.92494 0.92346 0.95272 0.96147 0.78020 0.93561 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.13 36.00 0.36 -0.59 16 2 C -0.12 -1.61 5.78 -106.46 -0.62 -2.22 16 3 C -0.27 -3.46 10.67 29.18 0.31 -3.15 16 4 S 0.23 3.23 17.92 -107.50 -1.93 1.31 16 5 C -0.25 -4.33 6.19 -36.79 -0.23 -4.55 16 6 C 0.59 11.69 7.33 -12.90 -0.09 11.60 16 7 O -0.53 -12.13 16.20 5.19 0.08 -12.05 16 8 N -0.59 -10.34 2.24 -175.51 -0.39 -10.74 16 9 C 0.06 0.89 7.94 59.84 0.48 1.37 16 10 C 0.13 2.23 2.79 -67.93 -0.19 2.04 16 11 H 0.10 2.03 6.91 -51.93 -0.36 1.68 16 12 C -0.16 -2.00 9.19 37.16 0.34 -1.65 16 13 C 0.14 2.91 5.55 -4.04 -0.02 2.89 16 14 N -0.73 -19.04 5.43 -59.91 -0.33 -19.37 16 15 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 19 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.06 -0.96 9.80 -40.43 -0.40 -1.36 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 27 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.07 1.17 7.47 -51.93 -0.39 0.78 16 29 H 0.09 1.01 6.46 -51.92 -0.34 0.68 16 30 H 0.07 0.84 5.17 -28.15 -0.15 0.70 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.66 6.68 -51.93 -0.35 0.31 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.40 7.83 -51.93 -0.41 -0.01 16 36 H 0.39 11.02 7.06 -40.82 -0.29 10.74 16 37 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -34.24 325.24 -7.45 -41.69 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.20 Total: 7.88 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.30 Total: -3.11 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.01 Total: -58.37 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.93 Total: 1.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.24 -7.45 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753690974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.820 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds