Wall clock time and date at job start Tue Mar 31 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33813 * 122.45049 * 2 1 4 4 S 1.70615 * 110.95084 * 180.27910 * 3 2 1 5 5 C 1.75831 * 91.56451 * 359.73015 * 4 3 2 6 6 C 1.46586 * 125.45580 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99753 * 171.35629 * 6 5 4 8 8 N 1.34781 * 120.00160 * 351.35834 * 6 5 4 9 9 C 1.46499 * 120.00052 * 0.14899 * 8 6 5 10 10 C 1.46501 * 119.99881 * 180.14287 * 8 6 5 11 11 H 1.09000 * 109.47053 * 0.02562 * 10 8 6 12 12 C 1.52994 * 109.47181 * 239.99905 * 10 8 6 13 13 C 1.52998 * 109.46756 * 119.99839 * 10 8 6 14 14 N 1.46499 * 109.47517 * 305.00322 * 13 10 8 15 15 C 1.36933 * 119.99877 * 180.02562 * 14 13 10 16 16 H 1.07994 * 120.00700 * 0.02562 * 15 14 13 17 17 C 1.38820 * 119.99798 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99824 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47024 * 59.99999 * 19 17 15 21 21 H 1.48496 * 109.46733 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47164 * 299.99768 * 19 17 15 23 23 C 1.36643 * 109.08502 * 359.97438 * 5 4 3 24 24 H 1.08999 * 109.46920 * 270.22737 * 1 2 3 25 25 H 1.08997 * 109.46964 * 30.21638 * 1 2 3 26 26 H 1.08999 * 109.47350 * 150.22215 * 1 2 3 27 27 H 1.07993 * 124.52652 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.47564 * 83.45745 * 9 8 6 29 29 H 1.08994 * 109.46834 * 203.46513 * 9 8 6 30 30 H 1.09012 * 109.46915 * 323.45394 * 9 8 6 31 31 H 1.09000 * 109.47709 * 300.00311 * 12 10 8 32 32 H 1.09000 * 109.47009 * 60.00865 * 12 10 8 33 33 H 1.09003 * 109.47047 * 180.02562 * 12 10 8 34 34 H 1.09000 * 109.46787 * 65.00186 * 13 10 8 35 35 H 1.09002 * 109.46910 * 184.99976 * 13 10 8 36 36 H 0.96998 * 119.99924 * 359.97438 * 14 13 10 37 37 H 0.96998 * 119.99949 * 180.02562 * 18 17 15 38 38 H 1.07997 * 123.35335 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 16 3.8969 0.7891 -0.0078 5 6 3.5936 -0.9429 -0.0028 6 6 4.6230 -1.9864 -0.0053 7 8 4.3093 -3.1510 0.1569 8 7 5.9170 -1.6562 -0.1874 9 6 6.2951 -0.2539 -0.3794 10 6 6.9454 -2.6995 -0.1931 11 1 6.4777 -3.6716 -0.0370 12 6 7.9508 -2.4308 0.9284 13 6 7.6705 -2.6935 -1.5403 14 7 6.6923 -2.8315 -2.6221 15 6 7.1113 -2.8521 -3.9256 16 1 8.1629 -2.7669 -4.1562 17 6 6.1843 -2.9834 -4.9506 18 7 4.9028 -3.0887 -4.6694 19 14 6.7560 -3.0122 -6.7288 20 1 7.6810 -4.1557 -6.9328 21 1 5.5807 -3.1609 -7.6241 22 1 7.4606 -1.7433 -7.0428 23 6 2.2446 -1.1602 0.0051 24 1 -0.3633 0.0041 1.0277 25 1 -0.3633 0.8880 -0.5172 26 1 -0.3634 -0.8919 -0.5104 27 1 1.8027 2.1231 -0.0004 28 1 6.3910 0.2328 0.5911 29 1 7.2475 -0.2034 -0.9070 30 1 5.5279 0.2523 -0.9655 31 1 8.4185 -1.4587 0.7720 32 1 7.4342 -2.4352 1.8882 33 1 8.7162 -3.2068 0.9239 34 1 8.2116 -1.7545 -1.6574 35 1 8.3739 -3.5253 -1.5781 36 1 5.7478 -2.9091 -2.4149 37 1 4.2552 -3.1809 -5.3856 38 1 1.8018 -2.1452 0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753690975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:02 Heat of formation + Delta-G solvation = 14.226693 kcal Electronic energy + Delta-G solvation = -20357.346146 eV Core-core repulsion = 17327.215628 eV Total energy + Delta-G solvation = -3030.130517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75091 -38.00709 -36.21624 -34.02574 -32.21298 -30.62970 -29.94370 -27.69985 -26.83051 -25.65842 -24.44301 -22.52703 -20.88852 -19.20130 -18.85664 -17.72084 -17.04832 -16.18200 -15.68196 -15.26784 -14.82597 -14.42209 -13.86805 -13.61774 -13.41170 -13.23658 -13.01924 -12.90870 -12.73205 -12.29942 -12.22526 -12.02873 -11.93968 -11.86159 -11.70553 -11.45290 -10.81820 -10.74902 -10.48778 -10.35140 -10.05587 -9.66714 -9.59119 -8.83971 -8.70817 -8.33383 -8.09633 -6.87292 -5.69520 -2.99575 0.74279 1.68348 2.11150 2.55811 3.22190 3.46030 3.50186 3.51844 3.58874 4.61365 4.76462 5.04939 5.17223 5.24366 5.31768 5.37437 5.41567 5.55571 5.59482 5.60840 5.64259 5.67215 5.84667 5.93719 6.01391 6.05309 6.13516 6.19442 6.37547 6.44847 6.50537 6.56306 6.71942 6.97134 7.66995 7.72420 8.47329 8.49857 9.58747 10.17434 10.52641 11.52275 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.005976 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.939789 B = 4684.387708 C = 5760.394722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.117 4.117 3 C -0.272 4.272 4 S 0.221 5.779 5 C -0.250 4.250 6 C 0.592 3.408 7 O -0.529 6.529 8 N -0.591 5.591 9 C 0.069 3.931 10 C 0.127 3.873 11 H 0.103 0.897 12 C -0.155 4.155 13 C 0.143 3.857 14 N -0.728 5.728 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.927 5.927 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.056 4.056 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.030 0.970 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 10.296 13.547 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.408 4.408 4 S 0.491 5.509 5 C -0.370 4.370 6 C 0.380 3.620 7 O -0.407 6.407 8 N -0.323 5.323 9 C -0.077 4.077 10 C 0.024 3.976 11 H 0.121 0.879 12 C -0.213 4.213 13 C 0.014 3.986 14 N -0.373 5.373 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.089 4.089 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.177 0.823 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.938 10.611 13.476 17.178 hybrid contribution -1.418 -0.674 -1.194 1.972 sum -2.356 9.937 12.283 15.974 Atomic orbital electron populations 1.20499 0.90020 1.02748 1.01940 1.18702 0.97583 0.91647 1.05046 1.25656 1.02148 1.02812 1.10230 1.83435 1.01331 0.98637 1.67504 1.24570 0.98032 0.96873 1.17505 1.16927 0.81397 0.87179 0.76515 1.90808 1.80889 1.18705 1.50345 1.47479 1.06113 1.07732 1.71018 1.21903 1.02927 0.81747 1.01109 1.21447 0.88188 0.92101 0.95883 0.87923 1.22064 0.98978 1.02240 0.98035 1.21018 0.92611 0.98209 0.86714 1.42306 1.05451 1.88404 1.01122 1.19150 0.92508 1.42738 0.83040 0.91324 1.24759 0.95321 1.02892 0.97841 1.69685 0.99975 1.56549 1.31332 0.86291 0.77148 0.77750 0.85104 1.21299 1.21734 1.21352 1.20599 0.91158 0.99838 0.97275 0.91532 0.91792 0.91352 0.82310 0.92306 0.88735 0.90722 0.92355 0.92559 0.91241 0.96186 0.95247 0.77907 0.93510 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.13 36.01 0.36 -0.61 16 2 C -0.12 -1.58 5.78 -106.45 -0.62 -2.19 16 3 C -0.27 -3.35 10.67 29.18 0.31 -3.04 16 4 S 0.22 2.84 17.90 -107.50 -1.92 0.92 16 5 C -0.25 -4.25 6.23 -36.79 -0.23 -4.48 16 6 C 0.59 11.65 7.34 -12.89 -0.09 11.55 16 7 O -0.53 -12.14 16.18 5.19 0.08 -12.05 16 8 N -0.59 -10.33 2.24 -175.52 -0.39 -10.73 16 9 C 0.07 0.97 7.94 59.85 0.47 1.44 16 10 C 0.13 2.21 2.79 -67.93 -0.19 2.02 16 11 H 0.10 2.04 6.90 -51.93 -0.36 1.68 16 12 C -0.15 -1.98 9.19 37.15 0.34 -1.64 16 13 C 0.14 2.90 5.52 -4.04 -0.02 2.88 16 14 N -0.73 -19.14 5.43 -59.91 -0.33 -19.46 16 15 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 19 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C -0.06 -0.90 9.81 -40.44 -0.40 -1.29 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 26 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 27 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.06 0.64 7.76 -51.93 -0.40 0.24 16 29 H 0.09 1.31 6.54 -51.93 -0.34 0.97 16 30 H 0.08 1.11 4.61 -23.23 -0.11 1.00 16 31 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.39 6.87 -51.93 -0.36 0.04 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.39 11.13 7.06 -40.82 -0.29 10.84 16 37 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.15 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -34.35 325.08 -7.44 -41.78 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.18 Total: 8.12 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.30 Total: -2.90 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.01 Total: -58.59 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.92 Total: 0.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.35 -7.44 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753690975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.012 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds