Wall clock time and date at job start Tue Mar 31 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33824 * 122.44783 * 2 1 4 4 S 1.70612 * 110.95484 * 180.25351 * 3 2 1 5 5 C 1.75837 * 91.56388 * 359.73155 * 4 3 2 6 6 C 1.46577 * 125.45910 * 179.97438 * 5 4 3 7 7 O 1.21705 * 120.00090 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00188 * 0.02562 * 6 5 4 9 9 C 1.46496 * 120.00270 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47454 * 325.00036 * 9 8 6 11 11 C 1.53002 * 109.47116 * 85.00047 * 9 8 6 12 12 C 1.53004 * 109.47300 * 204.99700 * 9 8 6 13 13 N 1.46506 * 109.46888 * 55.00015 * 12 9 8 14 14 C 1.46494 * 119.99875 * 269.99938 * 13 12 9 15 15 C 1.36933 * 119.99634 * 90.00051 * 13 12 9 16 16 H 1.08000 * 120.00498 * 23.65664 * 15 13 12 17 17 C 1.38815 * 119.99431 * 203.65327 * 15 13 12 18 18 N 1.31622 * 120.00257 * 11.26057 * 17 15 13 19 19 Si 1.86809 * 119.99751 * 191.25871 * 17 15 13 20 20 H 1.48497 * 109.46897 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47087 * 120.00163 * 19 17 15 22 22 H 1.48503 * 109.46943 * 240.00175 * 19 17 15 23 23 C 1.36645 * 109.08017 * 359.97438 * 5 4 3 24 24 H 1.09006 * 109.46786 * 270.25174 * 1 2 3 25 25 H 1.08999 * 109.47342 * 30.25212 * 1 2 3 26 26 H 1.08999 * 109.46899 * 150.25354 * 1 2 3 27 27 H 1.07999 * 124.51962 * 359.94529 * 3 2 1 28 28 H 0.97007 * 119.99601 * 359.97438 * 8 6 5 29 29 H 1.08992 * 109.47427 * 60.00172 * 11 9 8 30 30 H 1.09001 * 109.47069 * 180.02562 * 11 9 8 31 31 H 1.09008 * 109.46875 * 299.99757 * 11 9 8 32 32 H 1.08997 * 109.47008 * 174.99807 * 12 9 8 33 33 H 1.09000 * 109.47047 * 295.00121 * 12 9 8 34 34 H 1.09004 * 109.47377 * 94.59570 * 14 13 12 35 35 H 1.08994 * 109.47304 * 214.59543 * 14 13 12 36 36 H 1.08996 * 109.47496 * 334.59949 * 14 13 12 37 37 H 0.96995 * 119.99808 * 180.02562 * 18 17 15 38 38 H 1.08002 * 123.34955 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1293 0.0000 4 16 3.8970 0.7894 -0.0070 5 6 3.5938 -0.9426 -0.0018 6 6 4.6232 -1.9861 -0.0048 7 8 4.3003 -3.1595 -0.0011 8 7 5.9274 -1.6461 -0.0117 9 6 6.9562 -2.6890 -0.0153 10 1 6.6151 -3.5381 0.5770 11 6 7.2179 -3.1423 -1.4530 12 6 8.2481 -2.1330 0.5872 13 7 7.9714 -1.5900 1.9195 14 6 7.5849 -0.1852 2.0720 15 6 8.0742 -2.3955 3.0220 16 1 8.6997 -3.2754 2.9916 17 6 7.3742 -2.0812 4.1788 18 7 6.4473 -1.1470 4.1539 19 14 7.7479 -2.9840 5.7710 20 1 8.8232 -3.9803 5.5343 21 1 8.1925 -2.0098 6.7998 22 1 6.5244 -3.6799 6.2442 23 6 2.2448 -1.1600 0.0056 24 1 -0.3633 0.0045 1.0277 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 1.8025 2.1232 -0.0008 28 1 6.1847 -0.7108 -0.0150 29 1 7.5591 -2.2934 -2.0453 30 1 7.9831 -3.9186 -1.4556 31 1 6.2975 -3.5385 -1.8822 32 1 8.9853 -2.9320 0.6664 33 1 8.6370 -1.3420 -0.0540 34 1 6.4978 -0.1076 2.0928 35 1 7.9948 0.2054 3.0033 36 1 7.9742 0.3919 1.2334 37 1 5.9585 -0.9272 4.9623 38 1 1.8021 -2.1451 0.0103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754309028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:04 Heat of formation + Delta-G solvation = 12.085502 kcal Electronic energy + Delta-G solvation = -20380.660476 eV Core-core repulsion = 17350.437110 eV Total energy + Delta-G solvation = -3030.223366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.35330 -37.89861 -36.23178 -33.98892 -31.60347 -30.77721 -29.90300 -27.69047 -26.17068 -25.61084 -24.36071 -21.74065 -20.45924 -19.96264 -18.75721 -18.00446 -16.78337 -15.83980 -15.52615 -14.86542 -14.71239 -14.23165 -13.84782 -13.55895 -13.39235 -13.14440 -13.06139 -12.85598 -12.22694 -12.12150 -11.98786 -11.89017 -11.73860 -11.42587 -11.07753 -10.84309 -10.77909 -10.70759 -10.53786 -10.19504 -9.93614 -9.84684 -9.48026 -8.70251 -8.57609 -8.36287 -8.20936 -6.73101 -5.70751 -3.17330 0.76379 1.69827 2.09547 2.56078 3.39856 3.47285 3.48967 3.62967 3.83143 4.52438 5.01106 5.05662 5.30915 5.36799 5.42656 5.50715 5.59045 5.63477 5.70298 5.85333 5.89943 6.00423 6.07670 6.11471 6.24857 6.43395 6.48484 6.52458 6.55702 6.64896 6.88955 7.15327 7.32384 7.67873 7.82777 8.07641 8.40903 8.75671 9.24595 9.86797 10.35128 11.34283 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.005854 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.234427 B = 4782.271555 C = 5501.436163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.117 4.117 3 C -0.248 4.248 4 S 0.209 5.791 5 C -0.241 4.241 6 C 0.591 3.409 7 O -0.541 6.541 8 N -0.692 5.692 9 C 0.117 3.883 10 H 0.088 0.912 11 C -0.159 4.159 12 C 0.142 3.858 13 N -0.597 5.597 14 C 0.160 3.840 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.006 3.994 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.068 4.068 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.164 0.836 28 H 0.392 0.608 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.033 0.967 35 H 0.043 0.957 36 H -0.006 1.006 37 H 0.251 0.749 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 5.785 -11.268 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.386 4.386 4 S 0.478 5.522 5 C -0.362 4.362 6 C 0.377 3.623 7 O -0.421 6.421 8 N -0.341 5.341 9 C 0.009 3.991 10 H 0.106 0.894 11 C -0.219 4.219 12 C 0.014 3.986 13 N -0.320 5.320 14 C 0.015 3.985 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.193 4.193 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.101 4.101 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.182 0.818 28 H 0.227 0.773 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.012 0.988 37 H 0.061 0.939 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.242 5.951 -11.107 13.648 hybrid contribution -1.278 -0.762 1.133 1.870 sum -6.520 5.189 -9.974 12.997 Atomic orbital electron populations 1.20481 0.89777 1.02463 1.02283 1.18716 0.97641 0.91624 1.05095 1.25069 0.98942 1.03052 1.11539 1.83032 1.03456 0.98695 1.67014 1.24762 0.98163 0.97249 1.16017 1.16839 0.81978 0.87126 0.76392 1.90766 1.81796 1.18268 1.51268 1.45670 1.04901 1.10155 1.73365 1.21932 0.90433 0.91580 0.95113 0.89400 1.22161 1.01493 1.00839 0.97361 1.21216 0.93159 0.97072 0.87181 1.43897 1.80518 1.06900 1.00639 1.20873 0.98507 0.82780 0.96353 1.19207 1.21853 1.07403 0.90161 0.91363 1.25033 0.96326 0.98895 0.99046 1.70046 1.23966 1.33656 1.27036 0.86209 0.77547 0.79073 0.83848 1.20335 1.21708 1.21796 1.20574 0.91134 0.99730 0.98636 0.91283 0.91778 0.91494 0.81840 0.77328 0.93149 0.91924 0.92898 0.92096 0.94002 0.94897 0.93775 0.98754 0.93912 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.13 36.01 0.36 -0.54 16 2 C -0.12 -1.56 5.78 -106.45 -0.62 -2.17 16 3 C -0.25 -3.13 10.67 29.18 0.31 -2.81 16 4 S 0.21 2.98 22.16 -107.50 -2.38 0.60 16 5 C -0.24 -4.27 6.45 -36.80 -0.24 -4.51 16 6 C 0.59 12.23 7.75 -12.90 -0.10 12.13 16 7 O -0.54 -12.79 16.50 5.18 0.09 -12.71 16 8 N -0.69 -13.39 4.41 -55.15 -0.24 -13.64 16 9 C 0.12 2.25 2.88 -67.93 -0.20 2.06 16 10 H 0.09 2.03 7.58 -51.93 -0.39 1.64 16 11 C -0.16 -2.46 9.48 37.16 0.35 -2.11 16 12 C 0.14 2.78 5.33 -4.04 -0.02 2.76 16 13 N -0.60 -14.48 2.78 -181.12 -0.50 -14.99 16 14 C 0.16 3.73 7.61 59.84 0.46 4.19 16 15 C -0.26 -7.00 9.66 -15.06 -0.15 -7.14 16 16 H 0.07 1.84 7.85 -52.49 -0.41 1.42 16 17 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 18 N -0.90 -26.15 10.66 55.49 0.59 -25.56 16 19 Si 0.90 22.23 29.57 -169.99 -5.03 17.20 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 C -0.07 -1.09 9.80 -40.44 -0.40 -1.48 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 26 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.39 7.06 6.29 -40.82 -0.26 6.80 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.06 1.15 8.03 -51.93 -0.42 0.74 16 33 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 34 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 35 H 0.04 1.13 7.30 -51.93 -0.38 0.75 16 36 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -32.11 330.95 -8.35 -40.46 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.55 Total: 3.20 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.32 Total: 0.44 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.15 Total: -54.18 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.38 Total: 0.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.11 -8.35 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754309028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.549 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds