Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36057 * 116.99945 * 2 1 4 4 C 1.38637 * 119.98767 * 359.72083 * 3 2 1 5 5 C 1.38137 * 120.04633 * 180.27581 * 4 3 2 6 6 C 1.38868 * 120.01756 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.00992 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00094 * 359.97438 * 7 6 5 9 9 C 1.50699 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99917 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00099 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00117 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46966 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00380 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99851 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00270 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00230 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47641 * 120.00225 * 17 15 13 20 20 H 1.48499 * 109.47357 * 240.00400 * 17 15 13 21 21 C 1.38837 * 119.97814 * 0.02562 * 6 5 4 22 22 C 1.38290 * 119.95893 * 359.97438 * 21 6 5 23 23 F 1.35100 * 120.01519 * 179.97438 * 22 21 6 24 24 H 1.08994 * 109.47302 * 299.99785 * 1 2 3 25 25 H 1.08999 * 109.47353 * 60.00491 * 1 2 3 26 26 H 1.09004 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.97630 * 0.25808 * 4 3 2 28 28 H 1.07998 * 119.99152 * 179.97438 * 5 4 3 29 29 H 0.97002 * 119.99800 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.46732 * 299.99267 * 8 7 6 31 31 H 1.08993 * 109.47151 * 59.99628 * 8 7 6 32 32 H 0.97002 * 120.00144 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.46952 * 299.99549 * 12 11 9 34 34 H 1.08993 * 109.47384 * 59.99814 * 12 11 9 35 35 H 0.96997 * 120.00223 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.02364 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2913 2.3748 -0.0059 5 6 1.9172 3.6062 -0.0116 6 6 3.3039 3.6808 -0.0121 7 7 3.9377 4.9283 -0.0174 8 6 3.1385 6.1560 -0.0230 9 6 4.0551 7.3521 -0.0274 10 8 5.2577 7.1946 -0.0254 11 7 3.5386 8.5970 -0.0334 12 6 4.4297 9.7598 -0.0382 13 6 3.6075 11.0227 -0.0451 14 1 2.5291 10.9650 -0.0463 15 6 4.2320 12.2519 -0.0499 16 7 5.5453 12.3223 -0.0490 17 14 3.2130 13.8174 -0.0578 18 1 1.7695 13.4684 -0.0582 19 1 3.5284 14.6196 1.1514 20 1 3.5306 14.6087 -1.2735 21 6 4.0612 2.5171 -0.0073 22 6 3.4336 1.2848 -0.0015 23 9 4.1694 0.1517 0.0026 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2128 2.3176 -0.0062 28 1 1.3279 4.5113 -0.0166 29 1 4.9064 4.9802 -0.0173 30 1 2.5100 6.1762 -0.9134 31 1 2.5094 6.1840 0.8666 32 1 2.5768 8.7230 -0.0353 33 1 5.0579 9.7397 0.8523 34 1 5.0591 9.7316 -0.9276 35 1 5.9847 13.1870 -0.0528 36 1 5.1397 2.5742 -0.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037290722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -93.850445 kcal Electronic energy + Delta-G solvation = -20663.978212 eV Core-core repulsion = 17062.947942 eV Total energy + Delta-G solvation = -3601.030270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.86151 -40.18459 -39.21338 -37.97010 -34.81591 -34.23091 -32.47136 -30.97144 -29.81946 -28.10652 -27.12779 -25.85510 -23.13112 -22.55961 -21.60526 -19.95875 -18.61772 -18.00304 -17.18041 -16.82614 -16.25417 -16.02252 -15.51763 -15.40544 -15.15023 -15.00279 -14.98562 -14.61963 -14.36767 -13.78662 -13.54766 -13.05721 -12.74585 -12.50491 -12.45449 -12.07714 -12.02018 -11.86223 -11.45488 -11.27526 -11.04192 -10.97773 -10.40895 -9.72487 -9.48932 -9.34626 -8.98375 -8.84783 -8.07165 -7.31902 -6.25052 -4.32710 0.98663 1.32513 3.00100 3.08868 3.17712 3.18311 3.26116 3.28659 3.50707 3.97206 4.19290 4.28834 4.52868 4.75719 4.89577 4.95367 5.03433 5.11462 5.15539 5.20240 5.30878 5.33946 5.35664 5.51716 5.78084 5.98803 6.08181 6.37126 6.99811 7.15868 7.21582 7.25541 7.38932 7.54558 7.68148 7.86518 8.42678 8.63345 8.88046 9.34063 10.85108 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.040980 B = 0.002550 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.088645 B =10977.002408 C =11634.342543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.027 3.973 4 C -0.128 4.128 5 C -0.174 4.174 6 C 0.223 3.777 7 N -0.727 5.727 8 C 0.103 3.897 9 C 0.493 3.507 10 O -0.552 6.552 11 N -0.705 5.705 12 C 0.249 3.751 13 C -0.545 4.545 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.198 4.198 22 C 0.121 3.879 23 F -0.133 7.133 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.414 0.586 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.620 -20.140 0.082 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C -0.020 4.020 4 C -0.147 4.147 5 C -0.197 4.197 6 C 0.118 3.882 7 N -0.360 5.360 8 C -0.026 4.026 9 C 0.276 3.724 10 O -0.432 6.432 11 N -0.353 5.353 12 C 0.128 3.872 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.222 4.222 22 C 0.101 3.899 23 F -0.112 7.112 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.253 0.747 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.226 0.774 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.592 -20.121 0.082 22.738 hybrid contribution -0.695 1.040 -0.005 1.251 sum -11.287 -19.081 0.078 22.169 Atomic orbital electron populations 1.23016 0.78600 1.03782 1.01197 1.86106 1.21076 1.25872 1.90014 1.18670 0.90549 0.85530 1.07233 1.20847 0.99826 0.90906 1.03128 1.20536 0.92397 0.97965 1.08807 1.17403 0.91432 0.85071 0.94298 1.44445 1.09473 1.00868 1.81203 1.21138 0.94154 0.84141 1.03130 1.20313 0.89113 0.84918 0.78011 1.90666 1.15382 1.85838 1.51288 1.46417 1.11197 1.06122 1.71587 1.19173 0.89538 0.80508 0.97946 1.21233 0.93247 0.90393 1.53482 0.91734 1.24963 0.95060 0.99436 0.94582 1.69977 1.07915 1.25581 1.48695 0.86337 0.80088 0.82530 0.77817 1.19596 1.20747 1.20754 1.20321 1.00755 0.89172 1.11918 1.16560 0.85752 0.82203 1.05425 1.91486 1.76760 1.48947 1.93999 0.92759 0.92766 0.88409 0.84637 0.84973 0.74728 0.89473 0.89476 0.77370 0.95325 0.95333 0.92394 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.54 10.36 -19.92 -0.21 -3.75 16 3 C 0.03 0.31 6.69 -39.19 -0.26 0.05 16 4 C -0.13 -1.23 9.03 -39.47 -0.36 -1.58 16 5 C -0.17 -1.77 9.31 -39.39 -0.37 -2.14 16 6 C 0.22 2.63 6.65 -83.70 -0.56 2.08 16 7 N -0.73 -9.33 5.71 -59.77 -0.34 -9.67 16 8 C 0.10 1.27 5.39 -5.20 -0.03 1.24 16 9 C 0.49 8.82 7.90 -10.99 -0.09 8.74 16 10 O -0.55 -12.16 15.67 5.55 0.09 -12.07 16 11 N -0.71 -13.53 5.55 -61.47 -0.34 -13.88 16 12 C 0.25 6.27 5.43 -5.19 -0.03 6.25 16 13 C -0.55 -14.19 9.28 -34.44 -0.32 -14.51 16 14 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.88 -25.41 13.29 55.43 0.74 -24.68 16 17 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.20 -2.36 9.87 -39.34 -0.39 -2.75 16 22 C 0.12 1.53 7.31 -39.32 -0.29 1.25 16 23 F -0.13 -1.82 17.11 2.25 0.04 -1.78 16 24 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 25 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.14 0.93 6.29 -52.48 -0.33 0.60 16 28 H 0.13 1.10 6.73 -52.49 -0.35 0.74 16 29 H 0.41 5.81 7.45 -40.82 -0.30 5.51 16 30 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 31 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 32 H 0.39 6.25 8.32 -40.82 -0.34 5.91 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -31.99 319.06 -6.20 -38.19 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.17 Total: 6.20 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.79 Total: 1.41 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.05 Total: -48.23 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.12 Total: -15.82 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.99 -6.20 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037290722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.664 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds