Wall clock time and date at job start Tue Mar 31 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99831 * 293.79913 * 10 9 7 12 12 C 1.53048 * 109.36410 * 176.81063 * 11 10 9 13 13 N 1.46959 * 109.36409 * 58.40073 * 12 11 10 14 14 C 1.39985 * 111.00090 * 176.81041 * 13 12 11 15 15 C 1.38801 * 120.05714 * 63.80211 * 14 13 12 16 16 C 1.38168 * 119.97768 * 179.97438 * 15 14 13 17 17 C 1.38455 * 120.08600 * 359.97438 * 16 15 14 18 18 F 1.35092 * 119.94490 * 179.97438 * 17 16 15 19 19 C 1.38469 * 120.10955 * 0.02562 * 17 16 15 20 20 C 1.38289 * 120.02301 * 359.73996 * 19 17 16 21 21 F 1.35103 * 120.04175 * 180.25944 * 20 19 17 22 22 C 1.46959 * 110.88119 * 300.67921 * 13 12 11 23 23 C 1.46955 * 110.99744 * 169.99905 * 10 9 7 24 24 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 26 26 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 27 27 H 1.08995 * 109.48972 * 296.77903 * 11 10 9 28 28 H 1.08998 * 109.48999 * 56.84502 * 11 10 9 29 29 H 1.08999 * 109.48951 * 298.43451 * 12 11 10 30 30 H 1.09000 * 109.50530 * 178.37669 * 12 11 10 31 31 H 1.08005 * 120.00703 * 359.97438 * 15 14 13 32 32 H 1.07996 * 119.95543 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.98377 * 180.02562 * 19 17 16 34 34 H 1.08995 * 109.48972 * 299.35239 * 22 13 12 35 35 H 1.08998 * 109.48999 * 179.28640 * 22 13 12 36 36 H 1.08994 * 109.48867 * 303.15267 * 23 10 9 37 37 H 1.09001 * 109.49150 * 63.20104 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9687 -3.6563 -1.2559 12 6 4.0042 -4.7810 -1.1842 13 7 3.3194 -6.0593 -0.9460 14 6 4.2291 -7.1233 -0.9460 15 6 5.2202 -7.1907 0.0234 16 6 6.1168 -8.2419 0.0221 17 6 6.0279 -9.2289 -0.9448 18 9 6.9064 -10.2551 -0.9436 19 6 5.0406 -9.1652 -1.9136 20 6 4.1378 -8.1177 -1.9137 21 9 3.1711 -8.0580 -2.8556 22 6 2.5564 -6.0188 0.3093 23 6 1.5209 -4.8940 0.2377 24 1 -0.4849 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.2896 -3.8397 -2.0884 28 1 3.4766 -2.7032 -1.4036 29 1 4.6997 -4.5835 -0.3686 30 1 4.5520 -4.8318 -2.1252 31 1 5.2904 -6.4216 0.7785 32 1 6.8881 -8.2937 0.7763 33 1 4.9728 -9.9364 -2.6666 34 1 3.2355 -5.8354 1.1419 35 1 2.0485 -6.9718 0.4571 36 1 0.9734 -4.8433 1.1788 37 1 0.8250 -5.0913 -0.5777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049838349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:52 Heat of formation + Delta-G solvation = -45.627707 kcal Electronic energy + Delta-G solvation = -21837.447869 eV Core-core repulsion = 18250.881483 eV Total energy + Delta-G solvation = -3586.566386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.23983 -48.93351 -40.04284 -37.91536 -35.03707 -32.54334 -31.07601 -30.56540 -29.83003 -27.27722 -25.01811 -23.49417 -23.14576 -22.29213 -21.35453 -19.28948 -18.40277 -17.28554 -17.09579 -16.36106 -16.13502 -15.84848 -15.44368 -14.99003 -14.61075 -14.57147 -14.40168 -14.32169 -14.18502 -13.72502 -13.31954 -12.90102 -12.40707 -12.15841 -12.12398 -11.87303 -11.70765 -11.25164 -10.97040 -10.82800 -10.76435 -10.51465 -10.37637 -9.79039 -9.31474 -9.23247 -8.73739 -8.52071 -8.43295 -7.29745 -6.04719 -4.06629 0.67257 0.76607 3.08164 3.31834 3.36235 3.38585 3.57415 3.77340 4.21403 4.39639 4.40250 4.60070 4.84013 4.90439 5.06673 5.30676 5.38578 5.41521 5.53516 5.58498 5.64529 5.69080 5.73602 5.80175 5.88354 5.99787 6.08246 6.34355 6.39686 6.54595 6.61984 6.94959 7.24282 7.27829 7.33124 7.76019 8.04429 8.15541 8.50520 9.00333 9.57726 11.06118 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.034895 B = 0.003493 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.207044 B = 8014.844447 C = 8283.113450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.067 3.933 12 C 0.063 3.937 13 N -0.503 5.503 14 C 0.054 3.946 15 C -0.090 4.090 16 C -0.155 4.155 17 C 0.120 3.880 18 F -0.134 7.134 19 C -0.191 4.191 20 C 0.153 3.847 21 F -0.118 7.118 22 C 0.066 3.934 23 C 0.056 3.944 24 H 0.262 0.738 25 H -0.007 1.007 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.565 -17.686 -1.319 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.062 4.062 12 C -0.063 4.063 13 N -0.225 5.225 14 C -0.041 4.041 15 C -0.111 4.111 16 C -0.175 4.175 17 C 0.101 3.899 18 F -0.113 7.113 19 C -0.211 4.211 20 C 0.132 3.868 21 F -0.096 7.096 22 C -0.061 4.061 23 C -0.073 4.073 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.361 -17.552 -1.353 20.427 hybrid contribution 0.325 0.714 -0.199 0.809 sum 10.686 -16.838 -1.551 20.003 Atomic orbital electron populations 1.69948 1.06076 1.26935 1.50786 1.24989 0.94860 0.99314 0.95396 0.86561 0.79442 0.82763 0.78630 1.20252 1.21353 1.20188 1.21104 0.93395 0.89946 1.50367 0.91962 1.19704 0.90011 0.87166 0.96228 1.62319 1.28228 1.02744 1.33056 1.22009 0.95440 0.97183 0.91556 1.22374 0.96242 0.87059 1.00599 1.59859 1.23950 1.02279 1.36435 1.19007 0.95100 0.94523 0.95477 1.21539 0.93367 0.97845 0.98300 1.21082 1.01927 0.94600 0.99857 1.17271 0.89519 0.86549 0.96575 1.91519 1.66831 1.56824 1.96112 1.20971 0.96968 1.00976 1.02193 1.17208 0.87541 0.94176 0.87892 1.91549 1.60255 1.95950 1.61878 1.22285 0.96028 0.99179 0.88560 1.22079 0.94611 0.89745 1.00902 0.92827 0.98945 0.95149 0.94993 0.89102 0.93534 0.90872 0.83863 0.84100 0.83336 0.93507 0.90897 0.90565 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.03 8.47 -34.44 -0.29 -14.32 16 8 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 9 C 0.19 4.97 4.72 -4.97 -0.02 4.95 16 10 N -0.54 -11.30 4.70 -235.91 -1.11 -12.40 16 11 C 0.07 1.28 5.43 -3.77 -0.02 1.25 16 12 C 0.06 0.97 5.36 -3.77 -0.02 0.95 16 13 N -0.50 -7.42 4.52 -170.84 -0.77 -8.19 16 14 C 0.05 0.69 4.74 -83.62 -0.40 0.29 16 15 C -0.09 -0.95 8.64 -39.40 -0.34 -1.29 16 16 C -0.16 -1.42 10.02 -39.53 -0.40 -1.82 16 17 C 0.12 1.19 7.30 -39.42 -0.29 0.90 16 18 F -0.13 -1.35 17.26 2.25 0.04 -1.31 16 19 C -0.19 -1.94 10.00 -39.48 -0.39 -2.33 16 20 C 0.15 1.87 7.31 -39.26 -0.29 1.58 16 21 F -0.12 -1.64 17.08 2.25 0.04 -1.60 16 22 C 0.07 0.96 5.31 -3.76 -0.02 0.94 16 23 C 0.06 0.99 5.61 -3.76 -0.02 0.97 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 26 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.84 6.79 -51.93 -0.35 1.48 16 29 H 0.05 0.69 7.45 -51.93 -0.39 0.30 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.14 1.40 7.06 -52.48 -0.37 1.03 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.05 0.66 7.24 -51.93 -0.38 0.28 16 35 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 36 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -29.42 312.93 -8.76 -38.18 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.79 Total: -3.50 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.60 Total: -6.46 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -1.14 Total: -46.33 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.42 -8.76 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049838349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.447 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds