Wall clock time and date at job start Tue Mar 31 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47441 * 2 1 4 4 C 1.53005 * 109.47074 * 119.99804 * 2 1 3 5 5 N 1.46902 * 109.47306 * 177.72566 * 4 2 1 6 6 C 1.46900 * 110.99994 * 157.32530 * 5 4 2 7 7 C 1.50698 * 109.47310 * 287.93094 * 6 5 4 8 8 H 1.08007 * 119.99707 * 4.69761 * 7 6 5 9 9 C 1.37875 * 120.00301 * 184.70558 * 7 6 5 10 10 N 1.31520 * 119.99699 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00392 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46807 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46958 * 119.99655 * 11 9 7 14 14 H 1.48499 * 109.46988 * 239.99649 * 11 9 7 15 15 C 1.46895 * 111.00162 * 281.28526 * 5 4 2 16 16 C 1.50697 * 109.47553 * 77.33190 * 15 5 4 17 17 C 1.38613 * 120.42527 * 245.32884 * 16 15 5 18 18 C 1.38666 * 118.43861 * 180.02562 * 17 16 15 19 19 C 1.38186 * 119.19196 * 0.02562 * 18 17 16 20 20 N 1.31886 * 120.77880 * 359.97438 * 19 18 17 21 21 C 1.31971 * 121.70975 * 359.97438 * 20 19 18 22 22 Cl 1.73595 * 119.63916 * 180.02562 * 21 20 19 23 23 H 1.09005 * 109.46731 * 300.00378 * 1 2 3 24 24 H 1.08999 * 109.47006 * 59.99862 * 1 2 3 25 25 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47119 * 239.99287 * 2 1 3 27 27 H 1.09001 * 109.47217 * 183.57052 * 3 2 1 28 28 H 1.09001 * 109.46671 * 303.56399 * 3 2 1 29 29 H 1.08996 * 109.47435 * 63.56545 * 3 2 1 30 30 H 1.08999 * 109.47274 * 57.72509 * 4 2 1 31 31 H 1.08997 * 109.46805 * 297.72755 * 4 2 1 32 32 H 1.09000 * 109.46892 * 47.93219 * 6 5 4 33 33 H 1.08995 * 109.46716 * 167.93156 * 6 5 4 34 34 H 0.96996 * 119.99670 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.46973 * 317.33342 * 15 5 4 36 36 H 1.08995 * 109.47228 * 197.33566 * 15 5 4 37 37 H 1.07998 * 120.77921 * 0.03604 * 17 16 15 38 38 H 1.08000 * 120.40443 * 180.02562 * 18 17 16 39 39 H 1.07997 * 119.61613 * 180.25924 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5080 -0.7690 1.2222 6 6 4.0541 -0.9433 2.5747 7 6 3.8817 0.3346 3.3546 8 1 3.3461 1.1651 2.9188 9 6 4.4076 0.4436 4.6244 10 7 5.0594 -0.5679 5.1553 11 14 4.1945 2.0279 5.5909 12 1 3.4295 3.0056 4.7761 13 1 3.4561 1.7453 6.8480 14 1 5.5288 2.5922 5.9168 15 6 3.9837 -1.8278 0.3219 16 6 3.8615 -1.3647 -1.1070 17 6 2.9860 -1.9956 -1.9769 18 6 2.9070 -1.5361 -3.2828 19 6 3.6982 -0.4721 -3.6720 20 7 4.5207 0.1052 -2.8178 21 6 4.6218 -0.3044 -1.5673 22 17 5.7218 0.4952 -0.4883 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 3.1282 1.4431 -0.0640 28 1 1.6255 1.9743 -0.8563 29 1 1.7299 1.9375 0.9202 30 1 1.6438 -1.7364 1.2700 31 1 1.7103 -0.1844 2.1387 32 1 3.5241 -1.7512 3.0792 33 1 5.1140 -1.1890 2.5096 34 1 5.4291 -0.4913 6.0487 35 1 3.3815 -2.7249 0.4658 36 1 5.0272 -2.0513 0.5433 37 1 2.3796 -2.8255 -1.6454 38 1 2.2352 -2.0040 -3.9872 39 1 3.6391 -0.1059 -4.6863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052717211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:04 Heat of formation + Delta-G solvation = 24.821062 kcal Electronic energy + Delta-G solvation = -20949.870923 eV Core-core repulsion = 17918.156106 eV Total energy + Delta-G solvation = -3031.714817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30007 -37.44253 -36.04712 -34.09905 -33.08750 -32.12666 -31.03655 -27.30131 -26.65520 -26.22035 -24.12767 -23.42054 -21.91343 -20.57078 -19.41094 -17.19930 -16.60503 -16.34382 -15.36177 -15.08791 -14.54354 -14.35286 -14.00546 -13.68967 -13.40730 -13.25755 -13.05729 -12.61395 -12.26896 -11.90883 -11.74545 -11.46233 -11.35601 -11.18877 -11.02001 -10.81817 -10.63039 -10.54955 -10.43789 -10.35612 -10.09117 -9.71023 -9.45551 -9.34914 -9.15624 -8.50907 -8.40267 -7.25947 -6.00066 -3.99799 1.09539 1.26666 2.35132 3.32506 3.40513 3.45482 3.76475 4.44536 4.58293 4.73533 4.90735 5.01398 5.10779 5.29611 5.35706 5.38540 5.46260 5.57017 5.70049 5.81631 5.96881 6.04100 6.09382 6.11884 6.20759 6.24684 6.31838 6.46724 6.53897 6.58500 6.61762 6.92111 7.03991 7.27557 7.31964 7.83794 7.88193 8.10612 8.21786 8.54783 9.08246 9.63968 11.10751 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.006214 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.030029 B = 4505.221348 C = 4983.370547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.134 4.134 4 C 0.067 3.933 5 N -0.519 5.519 6 C 0.197 3.803 7 C -0.496 4.496 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.089 3.911 16 C -0.092 4.092 17 C -0.067 4.067 18 C -0.178 4.178 19 C 0.103 3.897 20 N -0.484 5.484 21 C 0.193 3.807 22 Cl -0.001 7.001 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.018 0.982 31 H 0.083 0.917 32 H -0.013 1.013 33 H 0.034 0.966 34 H 0.259 0.741 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 -3.062 -15.400 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.191 4.191 4 C -0.061 4.061 5 N -0.243 5.243 6 C 0.072 3.928 7 C -0.535 4.535 8 H 0.083 0.917 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.040 4.040 16 C -0.095 4.095 17 C -0.094 4.094 18 C -0.198 4.198 19 C -0.055 4.055 20 N -0.194 5.194 21 C 0.029 3.971 22 Cl 0.028 6.972 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.101 0.899 32 H 0.005 0.995 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.611 -1.881 -15.553 16.331 hybrid contribution -0.843 -0.576 1.249 1.613 sum -5.454 -2.457 -14.305 15.505 Atomic orbital electron populations 1.21804 0.96409 1.00734 1.01182 1.21382 0.93980 0.97611 0.99121 1.21673 1.02803 0.94864 0.99754 1.22140 0.88415 0.97432 0.98109 1.62034 1.07150 1.42694 1.12418 1.19744 0.94972 0.96442 0.81598 1.21162 1.34264 0.99503 0.98542 0.91738 1.24950 0.95470 0.96426 0.97732 1.69962 1.37305 1.30655 1.16108 0.86520 0.77812 0.83766 0.79823 1.19659 1.21249 1.21118 1.21071 1.01654 0.93223 0.88037 1.20751 0.95464 0.95333 0.97988 1.21455 0.96199 0.98826 0.92881 1.22073 1.01649 0.99163 0.96934 1.22536 0.91610 0.92795 0.98517 1.67096 1.20218 1.29739 1.02397 1.21607 0.93954 0.92205 0.89381 1.98461 1.60102 1.78917 1.59762 0.92810 0.93470 0.93507 0.91384 0.90932 0.95115 0.93107 0.96393 0.89874 0.99488 0.94832 0.93101 0.94315 0.89629 0.84532 0.84703 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 2 C -0.10 -1.62 2.66 -90.62 -0.24 -1.86 16 3 C -0.13 -2.32 9.01 37.16 0.33 -1.98 16 4 C 0.07 1.24 4.24 -3.82 -0.02 1.22 16 5 N -0.52 -10.33 2.96 -237.52 -0.70 -11.03 16 6 C 0.20 4.84 4.71 -4.98 -0.02 4.82 16 7 C -0.50 -13.41 8.40 -34.44 -0.29 -13.70 16 8 H 0.06 1.76 7.60 -52.48 -0.40 1.36 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 11 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.09 1.51 4.53 -4.98 -0.02 1.49 16 16 C -0.09 -1.39 3.48 -104.44 -0.36 -1.75 16 17 C -0.07 -0.81 7.83 -39.28 -0.31 -1.12 16 18 C -0.18 -1.86 10.11 -39.44 -0.40 -2.26 16 19 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 20 N -0.48 -7.44 10.34 -10.36 -0.11 -7.55 16 21 C 0.19 3.17 6.61 -17.45 -0.12 3.06 16 22 Cl 0.00 -0.02 26.77 -51.86 -1.39 -1.41 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.04 3.80 -51.93 -0.20 0.84 16 27 H 0.07 1.40 6.46 -51.93 -0.34 1.06 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.02 0.31 7.65 -51.93 -0.40 -0.08 16 31 H 0.08 1.73 6.97 -51.93 -0.36 1.36 16 32 H -0.01 -0.33 8.05 -51.93 -0.42 -0.75 16 33 H 0.03 0.89 7.67 -51.93 -0.40 0.49 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.04 0.61 7.46 -51.93 -0.39 0.22 16 36 H 0.09 1.52 7.47 -51.93 -0.39 1.13 16 37 H 0.14 1.37 8.01 -52.49 -0.42 0.95 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -29.51 327.88 -8.73 -38.24 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.80 Total: -2.99 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.39 Total: -11.23 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.07 Total: -44.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.39 Total: -1.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.51 -8.73 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052717211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.066 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds