Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46904 * 111.00430 * 183.95351 * 12 2 1 14 14 C 1.46902 * 110.99995 * 59.99995 * 12 2 1 15 15 C 1.50699 * 109.47426 * 190.00400 * 14 12 2 16 16 C 1.38221 * 119.98258 * 259.72424 * 15 14 12 17 17 C 1.38440 * 119.97076 * 179.79278 * 16 15 14 18 18 F 1.35103 * 120.02841 * 180.21216 * 17 16 15 19 19 C 1.38484 * 119.94942 * 0.47457 * 17 16 15 20 20 C 1.38178 * 119.97062 * 359.76227 * 19 17 16 21 21 C 1.38216 * 119.98875 * 79.99692 * 15 14 12 22 22 N 1.48010 * 119.97397 * 0.02562 * 21 15 14 23 23 O 1.21802 * 119.99557 * 179.97438 * 22 21 15 24 24 O 1.21796 * 120.00007 * 0.02562 * 22 21 15 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46649 * 60.00159 * 13 12 2 30 30 H 1.08997 * 109.47179 * 180.02562 * 13 12 2 31 31 H 1.09001 * 109.46814 * 300.00363 * 13 12 2 32 32 H 1.08999 * 109.47127 * 310.00477 * 14 12 2 33 33 H 1.09007 * 109.47146 * 70.00046 * 14 12 2 34 34 H 1.07995 * 120.01470 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.01493 * 179.72253 * 19 17 16 36 36 H 1.08000 * 119.98280 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 7 2.0197 -0.6925 -1.1993 13 6 3.4852 -0.7945 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8912 -3.6158 16 6 2.9571 -0.6107 -4.4056 17 6 3.2435 -1.4078 -5.5007 18 9 4.3199 -1.1372 -6.2709 19 6 2.4225 -2.4796 -5.8092 20 6 1.3216 -2.7551 -5.0209 21 6 1.0393 -1.9611 -3.9247 22 7 -0.1411 -2.2565 -3.0820 23 8 -0.8631 -3.1989 -3.3542 24 8 -0.3909 -1.5565 -2.1171 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 3.8030 -1.3532 -0.3065 30 1 3.8210 -1.3109 -2.0861 31 1 3.9187 0.2052 -1.1590 32 1 0.4723 0.1324 -2.3564 33 1 2.0520 0.9346 -2.5280 34 1 3.5939 0.2283 -4.1668 35 1 2.6424 -3.0994 -6.6658 36 1 0.6810 -3.5906 -5.2616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = -0.420920 kcal Electronic energy + Delta-G solvation = -22788.081219 eV Core-core repulsion = 19191.102358 eV Total energy + Delta-G solvation = -3596.978862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.42674 -41.83584 -39.47430 -37.08003 -35.94987 -33.21058 -31.71760 -31.61813 -29.01799 -27.53420 -25.87595 -24.74889 -23.56929 -22.71673 -21.81254 -19.51508 -18.87617 -18.28472 -17.61681 -17.06525 -16.71021 -16.19240 -16.07292 -15.23462 -14.98385 -14.30036 -14.09678 -13.94874 -13.78429 -13.55808 -12.66700 -12.58743 -12.45094 -11.98303 -11.55109 -11.43617 -11.06132 -10.91984 -10.73141 -10.65910 -10.58000 -10.25760 -9.99008 -9.87779 -9.78187 -9.49590 -9.38354 -8.80328 -8.37937 -7.27952 -5.97455 -4.01783 -0.07673 0.66193 1.48413 1.74655 3.00352 3.32520 3.39769 3.43905 3.63678 4.13137 4.24962 4.43565 4.56971 4.62000 5.02751 5.11162 5.32923 5.34492 5.44840 5.49526 5.54774 5.92461 6.01516 6.10109 6.14337 6.28429 6.66941 6.81632 7.01725 7.20741 7.26461 7.58970 7.74406 7.85559 8.09139 8.28511 8.41005 8.57439 9.02810 9.62574 11.09075 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.005231 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.734410 B = 5350.941709 C = 6009.266876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.217 3.783 3 H -0.002 1.002 4 C -0.503 4.503 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.520 5.520 13 C 0.031 3.969 14 C 0.062 3.938 15 C 0.034 3.966 16 C -0.156 4.156 17 C 0.148 3.852 18 F -0.126 7.126 19 C -0.166 4.166 20 C -0.029 4.029 21 C -0.041 4.041 22 N 0.026 4.974 23 O -0.203 6.203 24 O -0.087 6.087 25 H 0.048 0.952 26 H 0.010 0.990 27 H 0.080 0.920 28 H 0.260 0.740 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.015 0.985 32 H 0.121 0.879 33 H 0.039 0.961 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -3.179 -16.866 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.112 3.888 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.245 5.245 13 C -0.118 4.118 14 C -0.065 4.065 15 C 0.031 3.969 16 C -0.176 4.176 17 C 0.129 3.871 18 F -0.105 7.105 19 C -0.185 4.185 20 C -0.048 4.048 21 C -0.125 4.125 22 N 0.545 4.455 23 O -0.405 6.405 24 O -0.316 6.316 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.470 -3.482 -17.194 17.883 hybrid contribution 0.741 0.309 0.843 1.164 sum 4.211 -3.173 -16.351 17.180 Atomic orbital electron populations 1.21806 0.96561 1.00698 0.99285 1.19278 0.93142 0.91541 0.84791 0.98470 1.21102 1.31096 1.12240 0.89716 0.92087 1.24887 0.95178 0.95087 0.98883 1.69893 1.36702 1.23030 1.23372 0.86546 0.78349 0.80092 0.82689 1.20946 1.21208 1.19926 1.62213 1.08757 1.52406 1.01151 1.22329 0.89031 0.99311 1.01104 1.21649 1.04605 0.92628 0.87655 1.19919 0.89940 0.91938 0.95055 1.21143 0.98890 1.02522 0.95081 1.17919 0.84469 0.94945 0.89806 1.91559 1.52316 1.93130 1.73455 1.21034 0.95635 0.98972 1.02869 1.20839 0.95785 0.97581 0.90607 1.20972 0.92688 1.01869 0.96928 1.43495 1.01111 1.00192 1.00664 1.94482 1.47044 1.22174 1.76810 1.94716 1.75970 1.45346 1.15548 0.93271 0.97112 0.90107 0.92999 0.90176 0.94468 0.96620 0.86183 0.94263 0.82813 0.82826 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 7.49 37.16 0.28 -2.77 16 2 C 0.22 5.37 2.06 -68.87 -0.14 5.23 16 3 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 4 C -0.50 -13.61 7.93 -34.44 -0.27 -13.88 16 5 H 0.06 1.66 6.39 -52.49 -0.34 1.32 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.52 -10.82 3.98 -237.72 -0.95 -11.77 16 13 C 0.03 0.58 9.01 60.07 0.54 1.12 16 14 C 0.06 1.08 4.00 -4.98 -0.02 1.06 16 15 C 0.03 0.49 4.57 -104.64 -0.48 0.01 16 16 C -0.16 -1.84 8.62 -39.51 -0.34 -2.18 16 17 C 0.15 1.54 7.30 -39.42 -0.29 1.26 16 18 F -0.13 -1.30 17.27 2.25 0.04 -1.26 16 19 C -0.17 -1.52 10.03 -39.51 -0.40 -1.92 16 20 C -0.03 -0.32 9.55 -39.59 -0.38 -0.70 16 21 C -0.04 -0.60 6.85 -79.95 -0.55 -1.14 16 22 N 0.03 0.47 4.45 33.96 0.15 0.62 16 23 O -0.20 -3.61 18.45 -29.46 -0.54 -4.15 16 24 O -0.09 -1.75 11.49 -29.46 -0.34 -2.09 16 25 H 0.05 1.23 6.74 -51.93 -0.35 0.88 16 26 H 0.01 0.22 5.92 -51.93 -0.31 -0.09 16 27 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.65 6.23 -51.93 -0.32 1.32 16 30 H 0.04 0.60 6.43 -51.93 -0.33 0.27 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.12 2.21 3.91 -51.93 -0.20 2.00 16 33 H 0.04 0.64 7.98 -51.92 -0.41 0.22 16 34 H 0.15 1.60 8.03 -52.49 -0.42 1.18 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.16 1.48 7.61 -52.49 -0.40 1.08 16 LS Contribution 298.49 15.07 4.50 4.50 Total: -1.00 -29.44 298.49 -7.48 -36.92 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.81 Total: -2.18 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -2.14 Total: -12.34 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.17 Total: -35.71 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.88 Total: -6.24 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.44 -7.48 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.495 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds