Wall clock time and date at job start Tue Mar 31 2020 05:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47232 * 2 1 4 4 C 1.36954 * 119.99868 * 264.53413 * 3 2 1 5 5 H 1.07998 * 119.99630 * 190.50401 * 4 3 2 6 6 C 1.38975 * 120.00063 * 10.23183 * 4 3 2 7 7 N 1.31416 * 120.00059 * 31.40731 * 6 4 3 8 8 Si 1.86800 * 119.99976 * 211.41146 * 6 4 3 9 9 H 1.48497 * 109.47117 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47311 * 119.99671 * 8 6 4 11 11 H 1.48501 * 109.47014 * 239.99635 * 8 6 4 12 12 C 1.34768 * 119.99907 * 84.53082 * 3 2 1 13 13 O 1.21671 * 120.00062 * 173.83350 * 12 3 2 14 14 C 1.47176 * 120.00191 * 353.83596 * 12 3 2 15 15 C 1.35303 * 123.15127 * 175.48079 * 14 12 3 16 16 S 1.70945 * 108.81952 * 179.97438 * 15 14 12 17 17 C 1.70766 * 91.13505 * 0.28398 * 16 15 14 18 18 C 1.50703 * 124.71187 * 179.85611 * 17 16 15 19 19 C 1.53005 * 109.46701 * 269.97547 * 18 17 16 20 20 C 1.53004 * 109.46972 * 175.00103 * 19 18 17 21 21 C 1.52997 * 109.47039 * 294.99611 * 19 18 17 22 22 N 1.28655 * 110.57813 * 359.83103 * 17 16 15 23 23 H 1.09002 * 109.47358 * 59.99866 * 1 2 3 24 24 H 1.09000 * 109.47462 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47586 * 299.99930 * 1 2 3 26 26 H 1.08996 * 109.46878 * 239.99858 * 2 1 3 27 27 H 1.09002 * 109.47358 * 120.00134 * 2 1 3 28 28 H 0.97001 * 119.99989 * 180.02562 * 7 6 4 29 29 H 1.08001 * 125.59240 * 0.03699 * 15 14 12 30 30 H 1.09000 * 109.47265 * 29.97126 * 18 17 16 31 31 H 1.08997 * 109.47283 * 149.97904 * 18 17 16 32 32 H 1.08993 * 109.47293 * 55.00044 * 19 18 17 33 33 H 1.08997 * 109.46943 * 59.99396 * 20 19 18 34 34 H 1.08993 * 109.47432 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.46684 * 300.00147 * 20 19 18 36 36 H 1.09003 * 109.47240 * 180.02562 * 21 19 18 37 37 H 1.09006 * 109.47670 * 300.00163 * 21 19 18 38 38 H 1.09004 * 109.47096 * 60.00583 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3531 1.9891 -1.1807 5 1 2.8693 2.9377 -1.1722 6 6 2.0335 1.3827 -2.3896 7 7 0.9573 0.6347 -2.4852 8 14 3.1340 1.6306 -3.8786 9 1 4.2738 2.5086 -3.5110 10 1 3.6504 0.3159 -4.3369 11 1 2.3529 2.2639 -4.9713 12 6 2.1380 2.0536 1.1618 13 8 2.6478 3.1583 1.1757 14 6 1.6522 1.4516 2.4139 15 6 1.8192 2.0291 3.6261 16 16 1.1182 1.0233 4.8174 17 6 0.6506 -0.1129 3.6314 18 6 -0.0830 -1.3981 3.9163 19 6 0.9288 -2.5172 4.1707 20 6 0.1877 -3.7911 4.5818 21 6 1.7281 -2.7821 2.8933 22 7 1.0111 0.2809 2.4609 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.7344 0.2111 -3.3289 29 1 2.3133 2.9716 3.8106 30 1 -0.7120 -1.2699 4.7972 31 1 -0.7054 -1.6587 3.0603 32 1 1.6081 -2.2184 4.9690 33 1 -0.4916 -4.0899 3.7835 34 1 0.9085 -4.5883 4.7635 35 1 -0.3819 -3.6024 5.4919 36 1 2.4487 -3.5797 3.0743 37 1 1.0489 -3.0810 2.0949 38 1 2.2562 -1.8746 2.6004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069008156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:48 Heat of formation + Delta-G solvation = 19.292844 kcal Electronic energy + Delta-G solvation = -20835.120684 eV Core-core repulsion = 17805.209851 eV Total energy + Delta-G solvation = -3029.910833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91301 -37.75632 -36.15842 -35.02174 -31.85241 -30.62222 -29.27326 -27.45772 -27.07104 -25.83707 -23.62463 -22.05112 -20.89268 -19.97245 -18.86604 -17.80434 -16.65563 -15.57192 -15.33443 -14.87932 -14.80934 -14.23556 -13.90561 -13.77460 -13.54991 -13.00905 -12.72950 -12.59571 -12.26337 -12.07958 -11.92698 -11.81736 -11.40722 -11.17178 -11.06954 -11.02790 -10.87365 -10.71127 -10.65600 -10.34703 -10.16985 -9.73301 -9.04049 -9.01384 -8.82777 -8.47251 -8.29947 -7.73450 -6.45730 -3.75370 1.05565 1.71633 2.11857 2.73153 3.16922 3.24229 3.33105 4.08637 4.32406 4.35484 4.84074 4.89722 4.95119 5.06757 5.14271 5.47201 5.56364 5.60690 5.66724 5.79801 5.86505 5.91823 5.94272 6.01846 6.12549 6.28670 6.38873 6.51676 6.64522 6.84203 6.92979 7.14054 7.40223 7.43769 7.93866 8.00392 8.12475 8.52074 9.15166 9.40752 10.02102 10.51224 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.005887 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.395449 B = 4755.225975 C = 5706.710077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.131 3.869 3 N -0.406 5.406 4 C -0.311 4.311 5 H 0.108 0.892 6 C 0.039 3.961 7 N -0.835 5.835 8 Si 0.912 3.088 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.486 3.514 13 O -0.598 6.598 14 C 0.050 3.950 15 C -0.251 4.251 16 S 0.137 5.863 17 C 0.021 3.979 18 C -0.035 4.035 19 C -0.089 4.089 20 C -0.145 4.145 21 C -0.148 4.148 22 N -0.417 5.417 23 H 0.088 0.912 24 H 0.028 0.972 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.269 0.731 29 H 0.178 0.822 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -9.031 12.621 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.007 3.993 3 N -0.120 5.120 4 C -0.439 4.439 5 H 0.126 0.874 6 C -0.167 4.167 7 N -0.471 5.471 8 Si 0.738 3.262 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.207 1.207 12 C 0.274 3.726 13 O -0.486 6.486 14 C -0.083 4.083 15 C -0.393 4.393 16 S 0.393 5.607 17 C -0.259 4.259 18 C -0.076 4.076 19 C -0.109 4.109 20 C -0.203 4.203 21 C -0.205 4.205 22 N -0.133 5.133 23 H 0.106 0.894 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.196 0.804 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.040 -8.890 13.013 16.051 hybrid contribution 0.660 0.446 -1.624 1.809 sum -2.379 -8.445 11.390 14.377 Atomic orbital electron populations 1.22060 0.96150 0.99272 1.02037 1.21470 0.95378 0.82400 1.00026 1.43802 1.51808 1.11456 1.04928 1.19798 1.35053 1.07259 0.81750 0.87427 1.25279 0.95495 0.96880 0.99084 1.70202 1.19316 1.30819 1.26779 0.86110 0.81047 0.78426 0.80643 1.18939 1.20403 1.20707 1.16705 0.87967 0.85860 0.82103 1.90613 1.51064 1.21117 1.85759 1.20994 1.00354 0.91035 0.95915 1.26246 1.10155 1.07373 0.95528 1.82392 1.51320 1.13362 1.13661 1.27185 1.05037 1.02016 0.91659 1.20315 0.96531 0.87822 1.02961 1.21098 0.96755 0.94262 0.98760 1.21827 1.00314 0.96930 1.01191 1.21870 0.99952 1.01898 0.96811 1.67609 1.10944 1.12405 1.22310 0.89384 0.95338 0.94573 0.91046 0.92005 0.92011 0.80420 0.90136 0.88788 0.91218 0.92364 0.92532 0.92751 0.93196 0.92196 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.06 37.15 0.34 -2.77 16 2 C 0.13 3.11 4.87 -4.04 -0.02 3.09 16 3 N -0.41 -10.92 2.63 -116.12 -0.31 -11.23 16 4 C -0.31 -8.78 9.36 -14.99 -0.14 -8.92 16 5 H 0.11 3.21 7.36 -52.49 -0.39 2.82 16 6 C 0.04 1.03 4.67 -17.46 -0.08 0.95 16 7 N -0.83 -21.53 8.90 55.50 0.49 -21.03 16 8 Si 0.91 20.22 29.65 -169.99 -5.04 15.18 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.49 12.98 7.55 -12.64 -0.10 12.89 16 13 O -0.60 -17.63 16.32 5.21 0.09 -17.54 16 14 C 0.05 1.10 6.29 -84.53 -0.53 0.57 16 15 C -0.25 -4.65 10.62 29.69 0.32 -4.33 16 16 S 0.14 1.90 22.92 -107.50 -2.46 -0.57 16 17 C 0.02 0.31 5.84 -13.61 -0.08 0.23 16 18 C -0.04 -0.41 5.27 -27.88 -0.15 -0.55 16 19 C -0.09 -0.93 2.91 -90.62 -0.26 -1.19 16 20 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 21 C -0.15 -1.84 8.99 37.16 0.33 -1.51 16 22 N -0.42 -7.95 3.98 -8.51 -0.03 -7.99 16 23 H 0.09 2.24 5.92 -51.93 -0.31 1.93 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.81 6.12 -51.93 -0.32 0.50 16 26 H 0.07 1.79 6.25 -51.93 -0.32 1.47 16 27 H 0.06 1.38 5.15 -51.93 -0.27 1.11 16 28 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 29 H 0.18 3.21 8.03 -52.49 -0.42 2.79 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.97 6.11 -51.93 -0.32 0.65 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -30.60 316.88 -7.80 -38.40 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.28 Total: 2.42 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.03 Total: -2.42 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.15 Total: -40.25 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.09 Total: -17.54 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.04 Total: 15.18 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.46 Total: -0.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.60 -7.80 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069008156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.697 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds