Wall clock time and date at job start Tue Mar 31 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00377 * 2 1 4 4 C 1.50701 * 109.46682 * 293.95219 * 3 2 1 5 5 H 1.07999 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99594 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99898 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00591 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47246 * 90.00240 * 8 6 4 10 10 H 1.48495 * 109.47482 * 210.00727 * 8 6 4 11 11 H 1.48507 * 109.47125 * 330.00561 * 8 6 4 12 12 C 1.46902 * 110.99512 * 123.94845 * 2 1 3 13 13 C 1.50703 * 109.47092 * 66.04677 * 12 2 1 14 14 O 1.21281 * 119.99837 * 0.02562 * 13 12 2 15 15 N 1.34781 * 120.00021 * 179.97438 * 13 12 2 16 16 C 1.46504 * 119.99832 * 0.02562 * 15 13 12 17 17 C 1.46499 * 119.99786 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.46992 * 90.00095 * 17 15 13 19 19 C 1.33393 * 125.20065 * 89.99565 * 18 17 15 20 20 C 1.38425 * 114.92007 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92135 * 0.02562 * 20 19 18 22 22 S 1.75882 * 125.20483 * 269.69419 * 18 17 15 23 23 H 1.09003 * 109.47748 * 296.05393 * 1 2 3 24 24 H 1.09007 * 109.46838 * 56.05044 * 1 2 3 25 25 H 1.08996 * 109.47841 * 176.04776 * 1 2 3 26 26 H 1.08998 * 109.47273 * 53.94486 * 3 2 1 27 27 H 1.08994 * 109.47337 * 173.95192 * 3 2 1 28 28 H 0.96999 * 120.00455 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47155 * 306.04786 * 12 2 1 30 30 H 1.08999 * 109.47484 * 186.04381 * 12 2 1 31 31 H 1.09000 * 109.46899 * 269.99516 * 16 15 13 32 32 H 1.08992 * 109.47334 * 29.99480 * 16 15 13 33 33 H 1.08994 * 109.46680 * 150.00103 * 16 15 13 34 34 H 1.09002 * 109.47391 * 330.00086 * 17 15 13 35 35 H 1.09001 * 109.46813 * 210.00142 * 17 15 13 36 36 H 1.08005 * 122.54147 * 359.96383 * 19 18 17 37 37 H 1.07995 * 122.53675 * 180.02562 * 20 19 18 38 38 H 1.07999 * 125.20519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0747 1.5111 -2.0488 6 6 2.0278 3.3490 -1.5290 7 7 1.7154 3.9385 -2.6624 8 14 3.0010 4.2757 -0.2316 9 1 4.4534 4.0623 -0.4558 10 1 2.6937 5.7256 -0.3239 11 1 2.6297 3.7760 1.1167 12 6 1.9953 -0.7659 1.1377 13 6 1.6367 -2.2204 0.9731 14 8 1.0053 -2.5832 0.0032 15 7 2.0186 -3.1180 1.9031 16 6 2.7818 -2.6797 3.0743 17 6 1.6695 -4.5318 1.7433 18 6 2.7615 -5.2356 0.9796 19 6 3.8253 -5.8257 1.5270 20 6 4.6971 -6.4099 0.6244 21 6 4.3417 -6.2939 -0.6560 22 16 2.8246 -5.4112 -0.7693 23 1 -0.3635 0.4514 0.9232 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3634 -1.0251 -0.0708 26 1 1.5611 1.9274 0.8308 27 1 3.0797 1.3443 0.1083 28 1 1.9900 4.8546 -2.8245 29 1 1.5609 -0.3871 2.0628 30 1 3.0796 -0.6611 1.1758 31 1 3.8478 -2.7289 2.8525 32 1 2.5092 -1.6541 3.3225 33 1 2.5561 -3.3303 3.9192 34 1 0.7312 -4.6147 1.1949 35 1 1.5583 -4.9918 2.7252 36 1 3.9937 -5.8459 2.5936 37 1 5.5969 -6.9209 0.9335 38 1 4.8977 -6.6864 -1.4946 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:34 Heat of formation + Delta-G solvation = 22.609223 kcal Electronic energy + Delta-G solvation = -19830.049334 eV Core-core repulsion = 16800.282310 eV Total energy + Delta-G solvation = -3029.767024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87757 -37.91597 -36.28647 -35.29247 -32.45257 -31.27909 -28.65990 -27.43267 -27.20325 -25.56623 -23.92580 -22.90787 -20.46162 -19.53190 -18.86949 -17.40859 -16.93724 -16.72414 -16.05910 -15.65593 -15.20161 -14.42142 -14.25865 -14.02462 -13.56897 -13.19755 -13.09318 -12.89840 -12.80953 -12.63552 -12.50721 -12.36841 -12.03327 -11.73961 -11.51113 -11.11038 -10.91404 -10.65497 -10.53033 -10.52489 -9.96573 -9.49103 -9.22910 -8.82994 -8.68091 -8.55009 -8.47288 -7.34292 -6.02312 -3.99657 0.88280 1.63059 2.03698 2.55520 2.87757 3.13081 3.28665 3.35876 3.36425 4.42898 4.59501 4.68740 4.90043 4.96526 4.98405 5.13397 5.23413 5.29199 5.33073 5.42817 5.53452 5.54471 5.66222 5.68899 5.98152 6.17197 6.22727 6.30992 6.37048 6.44923 6.77290 6.88045 7.03006 7.32801 7.58980 7.90412 8.01961 8.43006 8.68061 9.08433 9.58485 11.10907 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.003897 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.175782 B = 7182.712847 C = 7391.626078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.514 5.514 3 C 0.163 3.837 4 C -0.507 4.507 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.038 3.962 13 C 0.516 3.484 14 O -0.507 6.507 15 N -0.623 5.623 16 C 0.080 3.920 17 C 0.188 3.812 18 C -0.198 4.198 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.225 4.225 22 S 0.148 5.852 23 H 0.004 0.996 24 H 0.080 0.920 25 H 0.067 0.933 26 H -0.011 1.011 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 -20.133 13.628 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.238 5.238 3 C 0.037 3.963 4 C -0.546 4.546 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.094 4.094 13 C 0.304 3.696 14 O -0.380 6.380 15 N -0.359 5.359 16 C -0.063 4.063 17 C 0.063 3.937 18 C -0.318 4.318 19 C -0.165 4.165 20 C -0.173 4.173 21 C -0.362 4.362 22 S 0.413 5.587 23 H 0.023 0.977 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.007 0.993 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.035 -19.891 11.335 23.094 hybrid contribution 1.552 0.558 2.585 3.066 sum 4.587 -19.332 13.920 24.260 Atomic orbital electron populations 1.22395 0.87339 1.01579 1.00219 1.61675 1.08310 1.15880 1.37914 1.20229 0.94807 0.83693 0.97591 1.21023 1.35576 0.97171 1.00781 0.89936 1.24896 0.95845 0.97304 0.95297 1.69898 1.46910 1.13256 1.23820 0.86872 0.80903 0.79343 0.82668 1.20141 1.21181 1.19343 1.22020 1.01782 0.90701 0.94904 1.20971 0.78669 0.88190 0.81760 1.90659 1.38159 1.80292 1.28853 1.48022 1.57196 1.06730 1.23951 1.21796 0.96121 1.01088 0.87344 1.19751 0.94689 0.80013 0.99221 1.25011 1.02732 1.06655 0.97373 1.20052 0.94497 1.01124 1.00826 1.20098 1.01538 1.03465 0.92212 1.25812 1.02186 1.07175 1.00990 1.84922 1.18965 1.51188 1.03675 0.97712 0.90148 0.91445 0.99307 0.95862 0.92670 0.93082 0.88631 0.92610 0.90698 0.91214 0.88873 0.88961 0.84722 0.84719 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.03 60.06 0.54 1.23 16 2 N -0.51 -11.40 4.49 -245.83 -1.10 -12.51 16 3 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 4 C -0.51 -14.76 9.01 -34.44 -0.31 -15.07 16 5 H 0.08 2.65 7.37 -52.49 -0.39 2.26 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 8 Si 0.87 21.45 27.47 -169.99 -4.67 16.79 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.04 0.64 4.00 -4.97 -0.02 0.62 16 13 C 0.52 8.43 7.40 -10.98 -0.08 8.35 16 14 O -0.51 -9.97 13.89 5.56 0.08 -9.90 16 15 N -0.62 -7.53 2.86 -182.95 -0.52 -8.05 16 16 C 0.08 0.67 10.29 59.85 0.62 1.29 16 17 C 0.19 2.02 5.94 -5.19 -0.03 1.99 16 18 C -0.20 -2.29 6.09 -36.00 -0.22 -2.51 16 19 C -0.13 -1.32 10.05 -41.21 -0.41 -1.74 16 20 C -0.14 -1.40 10.18 -41.21 -0.42 -1.82 16 21 C -0.23 -2.41 11.23 29.04 0.33 -2.08 16 22 S 0.15 1.92 23.33 -107.50 -2.51 -0.59 16 23 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 24 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 25 H 0.07 1.37 5.88 -51.93 -0.31 1.07 16 26 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 27 H 0.02 0.56 7.36 -51.93 -0.38 0.18 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.05 0.77 7.38 -51.93 -0.38 0.39 16 30 H 0.10 1.52 7.90 -51.93 -0.41 1.11 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.61 6.44 -51.93 -0.33 0.27 16 33 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 34 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 35 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 36 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -34.13 327.46 -8.56 -42.69 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.41 Total: -2.35 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.13 Total: -3.86 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.85 Total: -47.71 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.51 Total: -0.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.13 -8.56 -42.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.296 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds