Wall clock time and date at job start Tue Mar 31 2020 05:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46734 * 2 1 4 4 C 1.50705 * 109.46661 * 240.00104 * 2 1 3 5 5 O 1.21277 * 119.99828 * 254.10376 * 4 2 1 6 6 N 1.34776 * 119.99682 * 74.11142 * 4 2 1 7 7 C 1.46501 * 119.99829 * 179.97438 * 6 4 2 8 8 C 1.50702 * 109.47139 * 179.97438 * 7 6 4 9 9 C 1.33388 * 125.20177 * 89.99558 * 8 7 6 10 10 C 1.38424 * 114.91868 * 179.97438 * 9 8 7 11 11 C 1.33396 * 114.92336 * 0.02562 * 10 9 8 12 12 S 1.75886 * 109.59056 * 359.75799 * 11 10 9 13 13 N 1.46904 * 109.47207 * 120.00321 * 2 1 3 14 14 C 1.46896 * 111.00034 * 284.19193 * 13 2 1 15 15 C 1.46908 * 110.99880 * 48.14806 * 13 2 1 16 16 C 1.50699 * 109.46839 * 170.00041 * 15 13 2 17 17 H 1.07997 * 119.99798 * 359.71982 * 16 15 13 18 18 C 1.37877 * 119.99973 * 180.02562 * 16 15 13 19 19 N 1.31521 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00303 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47156 * 59.99213 * 20 18 16 22 22 H 1.48495 * 109.47426 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46527 * 299.99719 * 20 18 16 24 24 H 1.08995 * 109.47656 * 59.99644 * 1 2 3 25 25 H 1.09004 * 109.47163 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46955 * 299.99580 * 1 2 3 27 27 H 0.96996 * 120.00242 * 359.97438 * 6 4 2 28 28 H 1.08995 * 109.46955 * 299.99265 * 7 6 4 29 29 H 1.08997 * 109.47410 * 59.99655 * 7 6 4 30 30 H 1.07992 * 122.54456 * 359.96232 * 9 8 7 31 31 H 1.08004 * 122.54270 * 180.02562 * 10 9 8 32 32 H 1.07993 * 125.20555 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47080 * 189.52758 * 14 13 2 34 34 H 1.09000 * 109.47236 * 309.52953 * 14 13 2 35 35 H 1.09000 * 109.46887 * 69.52988 * 14 13 2 36 36 H 1.09001 * 109.46992 * 49.99986 * 15 13 2 37 37 H 1.09003 * 109.46638 * 289.99850 * 15 13 2 38 38 H 0.96996 * 120.00141 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.5055 -1.8232 -1.1376 6 7 1.9555 -0.1091 -2.4343 7 6 2.4442 -0.7994 -3.6304 8 6 2.2442 0.0822 -4.8362 9 6 3.1302 0.9659 -5.2981 10 6 2.7256 1.6639 -6.4229 11 6 1.5109 1.3473 -6.8742 12 16 0.8095 0.0984 -5.8535 13 7 2.0197 -0.6926 1.1994 14 6 1.8782 0.1546 2.3911 15 6 1.3324 -1.9780 1.3826 16 6 2.0216 -2.7660 2.4666 17 1 2.8865 -2.3552 2.9660 18 6 1.5517 -4.0142 2.8163 19 7 0.5017 -4.5168 2.2043 20 14 2.4054 -4.9908 4.1605 21 1 2.3658 -4.2233 5.4312 22 1 1.7109 -6.2902 4.3455 23 1 3.8183 -5.2348 3.7735 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5767 0.7808 -2.5086 28 1 3.5050 -1.0211 -3.5140 29 1 1.8914 -1.7291 -3.7648 30 1 4.0902 1.1250 -4.8299 31 1 3.3464 2.4084 -6.8992 32 1 1.0331 1.7873 -7.7370 33 1 2.3980 -0.3085 3.2299 34 1 2.3099 1.1356 2.1929 35 1 0.8216 0.2651 2.6349 36 1 1.3608 -2.5413 0.4498 37 1 0.2957 -1.7983 1.6671 38 1 0.1708 -5.3947 2.4506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:55 Heat of formation + Delta-G solvation = 10.470910 kcal Electronic energy + Delta-G solvation = -19722.965782 eV Core-core repulsion = 16692.672402 eV Total energy + Delta-G solvation = -3030.293380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60888 -38.12943 -36.45869 -34.48926 -32.56006 -30.99586 -29.64448 -27.14401 -26.33946 -25.04184 -23.65302 -22.84430 -20.85086 -19.61552 -19.22411 -17.52504 -16.57269 -16.26242 -15.85047 -15.43367 -14.90069 -14.48194 -14.10100 -13.77936 -13.69219 -13.22415 -13.12804 -12.89695 -12.61537 -12.36200 -12.12886 -11.92979 -11.85759 -11.70051 -11.16678 -10.95909 -10.90357 -10.81566 -10.49579 -10.30725 -9.78250 -9.38508 -9.09849 -8.83405 -8.73759 -8.68627 -8.24204 -7.15452 -5.87675 -3.86469 0.67158 1.37397 1.76372 2.43860 3.20170 3.42292 3.45757 3.49270 3.52991 4.48598 4.54404 4.79832 5.03832 5.08193 5.23592 5.30125 5.43489 5.48158 5.51218 5.55512 5.71661 5.88034 5.96134 6.00615 6.05547 6.10944 6.21949 6.37569 6.56129 6.61052 6.75102 7.42176 7.44798 7.77556 7.93325 8.28449 8.31906 8.65609 8.79025 9.19334 9.75059 11.23784 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029999 B = 0.003469 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.128500 B = 8070.645529 C = 8354.344223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 H 0.087 0.913 4 C 0.517 3.483 5 O -0.495 6.495 6 N -0.739 5.739 7 C 0.194 3.806 8 C -0.193 4.193 9 C -0.121 4.121 10 C -0.138 4.138 11 C -0.214 4.214 12 S 0.114 5.886 13 N -0.522 5.522 14 C 0.040 3.960 15 C 0.187 3.813 16 C -0.500 4.500 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.396 0.604 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.016 0.984 36 H 0.054 0.946 37 H -0.010 1.010 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 15.172 -16.880 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.046 4.046 3 H 0.105 0.895 4 C 0.302 3.698 5 O -0.366 6.366 6 N -0.395 5.395 7 C 0.068 3.932 8 C -0.311 4.311 9 C -0.153 4.153 10 C -0.168 4.168 11 C -0.350 4.350 12 S 0.378 5.622 13 N -0.246 5.246 14 C -0.109 4.109 15 C 0.063 3.937 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.008 0.992 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.202 13.245 -16.856 21.438 hybrid contribution 0.653 0.847 0.607 1.230 sum 0.451 14.091 -16.249 21.513 Atomic orbital electron populations 1.22370 0.95854 1.03884 1.01630 1.21542 0.93881 0.97564 0.91573 0.89488 1.20783 0.78532 0.86738 0.83706 1.90774 1.41967 1.18676 1.85219 1.46132 1.66213 1.20823 1.06359 1.19558 1.00970 0.92983 0.79653 1.24600 0.98477 1.04973 1.03033 1.20240 1.01013 0.96786 0.97234 1.20192 0.96439 1.02448 0.97756 1.25720 0.99986 1.03817 1.05482 1.84515 1.18767 1.37102 1.21788 1.62132 1.57583 1.05160 0.99773 1.22228 0.98863 0.95432 0.94350 1.19961 0.91097 0.83876 0.98766 1.21112 1.13108 1.01233 1.18407 0.92245 1.24947 0.95274 0.97512 0.96925 1.69954 1.24224 1.17736 1.42131 0.86595 0.79775 0.79112 0.82087 1.20447 1.21468 1.20240 0.92905 0.90697 0.91768 0.77021 0.89686 0.90564 0.83977 0.84246 0.81915 0.90685 0.93850 0.96525 0.92809 0.99247 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.33 37.16 0.31 -2.61 16 2 C 0.07 1.20 2.70 -68.86 -0.19 1.02 16 3 H 0.09 1.27 7.82 -51.93 -0.41 0.86 16 4 C 0.52 9.60 6.94 -10.98 -0.08 9.53 16 5 O -0.50 -11.88 14.32 5.56 0.08 -11.81 16 6 N -0.74 -10.06 5.55 -61.47 -0.34 -10.41 16 7 C 0.19 2.46 6.16 -5.19 -0.03 2.43 16 8 C -0.19 -2.00 5.88 -36.00 -0.21 -2.21 16 9 C -0.12 -1.10 10.05 -41.21 -0.41 -1.52 16 10 C -0.14 -1.09 10.18 -41.21 -0.42 -1.51 16 11 C -0.21 -1.68 11.23 29.04 0.33 -1.35 16 12 S 0.11 1.08 23.33 -107.50 -2.51 -1.43 16 13 N -0.52 -11.72 4.45 -237.72 -1.06 -12.78 16 14 C 0.04 0.77 9.03 60.06 0.54 1.31 16 15 C 0.19 5.12 3.23 -4.97 -0.02 5.10 16 16 C -0.50 -14.85 8.58 -34.44 -0.30 -15.15 16 17 H 0.06 1.74 7.11 -52.49 -0.37 1.37 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -28.02 13.29 55.43 0.74 -27.28 16 20 Si 0.90 22.70 29.54 -169.99 -5.02 17.68 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.48 6.54 -51.93 -0.34 1.14 16 26 H 0.06 1.00 7.14 -51.93 -0.37 0.63 16 27 H 0.40 4.30 8.46 -40.82 -0.35 3.95 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 32 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.07 1.56 7.03 -51.93 -0.37 1.19 16 34 H 0.04 0.69 7.87 -51.93 -0.41 0.28 16 35 H 0.02 0.31 7.18 -51.93 -0.37 -0.06 16 36 H 0.05 1.64 5.88 -51.93 -0.31 1.33 16 37 H -0.01 -0.29 6.79 -51.93 -0.35 -0.64 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -34.76 328.30 -9.05 -43.80 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.31 Total: 0.72 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.57 Total: -3.44 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.66 Total: -50.47 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.76 -9.05 -43.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.273 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds