Wall clock time and date at job start Tue Mar 31 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47060 * 240.00291 * 3 2 1 5 5 H 1.48503 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46852 * 120.00283 * 3 2 1 7 7 C 1.38809 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99682 * 196.88391 * 7 2 1 9 9 N 1.36936 * 119.99955 * 17.16531 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57103 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.50701 * 109.47460 * 314.30370 * 13 12 11 15 15 C 1.38255 * 119.96402 * 269.72846 * 14 13 12 16 16 C 1.38211 * 120.06769 * 179.72796 * 15 14 13 17 17 C 1.38407 * 120.00021 * 0.54418 * 16 15 14 18 18 F 1.35107 * 120.03598 * 179.75060 * 17 16 15 19 19 C 1.38648 * 119.93040 * 359.72411 * 17 16 15 20 20 F 1.35099 * 120.03632 * 180.02562 * 19 17 16 21 21 C 1.38214 * 119.96247 * 89.99987 * 14 13 12 22 22 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 23 23 C 1.47086 * 120.87786 * 206.85385 * 9 7 2 24 24 H 0.97001 * 119.99713 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 26 26 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 27 27 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 28 28 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 29 29 H 1.08997 * 109.46672 * 74.30687 * 13 12 11 30 30 H 1.09001 * 109.46912 * 194.30455 * 13 12 11 31 31 H 1.08004 * 119.96273 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.99980 * 180.27640 * 16 15 14 33 33 H 1.07994 * 120.00139 * 0.02562 * 21 14 13 34 34 H 1.09002 * 109.49046 * 303.14169 * 22 12 11 35 35 H 1.08999 * 109.49556 * 183.06363 * 22 12 11 36 36 H 1.08998 * 109.62919 * 350.89226 * 23 9 7 37 37 H 1.09001 * 109.62891 * 111.47641 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3615 -0.3511 10 6 0.2074 -2.3399 -1.2501 11 6 0.4529 -3.3518 -2.3805 12 7 0.7625 -4.6641 -1.7975 13 6 0.8316 -5.6992 -2.8376 14 6 -0.3443 -5.5548 -3.7690 15 6 -1.5207 -6.2319 -3.5060 16 6 -2.6023 -6.0967 -4.3558 17 6 -2.5048 -5.2916 -5.4774 18 9 -3.5601 -5.1629 -6.3112 19 6 -1.3233 -4.6170 -5.7441 20 9 -1.2259 -3.8302 -6.8380 21 6 -0.2437 -4.7501 -4.8882 22 6 2.0049 -4.6199 -1.0152 23 6 1.8269 -3.6607 0.1665 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6890 -2.6166 -0.6951 26 1 0.0877 -1.3413 -1.6702 27 1 1.2903 -3.0197 -2.9942 28 1 -0.4422 -3.4300 -2.9976 29 1 1.7576 -5.5864 -3.4013 30 1 0.8074 -6.6844 -2.3719 31 1 -1.5960 -6.8634 -2.6331 32 1 -3.5222 -6.6227 -4.1469 33 1 0.6773 -4.2255 -5.0951 34 1 2.8208 -4.2702 -1.6478 35 1 2.2356 -5.6177 -0.6421 36 1 2.7785 -3.5357 0.6832 37 1 1.0831 -4.0619 0.8549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080723835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:23 Heat of formation + Delta-G solvation = -28.373403 kcal Electronic energy + Delta-G solvation = -22167.121098 eV Core-core repulsion = 18581.302916 eV Total energy + Delta-G solvation = -3585.818183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.49640 -48.57347 -39.64700 -37.66362 -34.56513 -32.00669 -30.96017 -30.34784 -29.89513 -27.15304 -24.77269 -23.37222 -22.77152 -22.50105 -21.18066 -19.12181 -17.96246 -17.19630 -17.02769 -16.70664 -16.35378 -15.30423 -14.98325 -14.87230 -14.57143 -14.52823 -14.36267 -14.04174 -13.55637 -13.39892 -13.14729 -13.11626 -12.74427 -12.12941 -11.86140 -11.61989 -11.40264 -11.26212 -11.04857 -10.73670 -10.52653 -10.33673 -10.08709 -9.78548 -9.65329 -9.10432 -8.72681 -8.50727 -7.87085 -6.67811 -5.78707 -3.20288 0.81513 0.90984 3.22840 3.38115 3.44263 3.45039 3.70986 4.23441 4.38731 4.47902 4.52234 4.57770 4.89248 5.01481 5.35057 5.40123 5.42854 5.52607 5.65032 5.74576 5.81618 5.85776 5.89680 5.93725 6.10428 6.19102 6.27652 6.34839 6.50737 6.65429 6.66832 6.90041 7.21656 7.49892 7.61322 7.67584 7.80097 8.42934 9.20458 9.83888 10.42289 11.30025 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.004567 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.165365 B = 6128.810925 C = 6886.070407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.179 3.821 11 C 0.029 3.971 12 N -0.526 5.526 13 C 0.089 3.911 14 C -0.053 4.053 15 C -0.081 4.081 16 C -0.126 4.126 17 C 0.060 3.940 18 F -0.133 7.133 19 C 0.067 3.933 20 F -0.131 7.131 21 C -0.118 4.118 22 C 0.044 3.956 23 C 0.149 3.851 24 H 0.255 0.745 25 H 0.026 0.974 26 H 0.088 0.912 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -14.158 -8.906 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.100 4.100 12 N -0.251 5.251 13 C -0.039 4.039 14 C -0.053 4.053 15 C -0.099 4.099 16 C -0.144 4.144 17 C 0.040 3.960 18 F -0.111 7.111 19 C 0.047 3.953 20 F -0.109 7.109 21 C -0.137 4.137 22 C -0.085 4.085 23 C 0.022 3.978 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.106 0.894 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.457 -14.070 -8.630 16.688 hybrid contribution 0.834 1.341 -0.972 1.855 sum -1.623 -12.729 -9.602 16.027 Atomic orbital electron populations 1.70018 1.05226 1.25643 1.53854 1.25024 0.95287 0.98357 1.00931 0.86377 0.78923 0.83423 0.78097 1.21104 1.21585 1.20862 1.19143 0.92553 0.84860 1.41840 0.91694 1.44144 1.34403 1.01274 1.52039 1.20949 0.88944 0.96531 0.88264 1.23130 0.98770 0.89230 0.98831 1.62183 1.34843 1.05801 1.22277 1.21157 0.93326 0.97678 0.91701 1.19754 0.96408 0.95153 0.94017 1.20988 0.91169 0.99050 0.98732 1.21071 1.00887 0.99251 0.93239 1.17691 0.83949 1.01997 0.92344 1.91515 1.54610 1.94781 1.70212 1.17619 0.94632 0.95763 0.87298 1.91525 1.96552 1.71853 1.50976 1.21063 0.98367 1.00030 0.94282 1.22659 0.89326 0.99591 0.96929 1.20974 0.97864 0.86495 0.92489 0.93527 0.95540 0.89416 0.95696 0.91766 0.94095 0.89736 0.83946 0.83729 0.83923 0.95265 0.91837 0.92527 0.95617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.16 55.49 0.62 -25.70 16 2 C 0.00 0.07 4.93 -17.43 -0.09 -0.01 16 3 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.98 9.63 -15.06 -0.15 -7.12 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.60 -14.95 3.03 -171.73 -0.52 -15.47 16 10 C 0.18 4.32 5.45 -3.36 -0.02 4.30 16 11 C 0.03 0.56 4.79 -3.47 -0.02 0.54 16 12 N -0.53 -8.73 4.77 -235.48 -1.12 -9.86 16 13 C 0.09 1.12 5.42 -4.98 -0.03 1.09 16 14 C -0.05 -0.64 4.13 -104.62 -0.43 -1.07 16 15 C -0.08 -0.86 9.69 -39.58 -0.38 -1.25 16 16 C -0.13 -1.33 10.02 -39.53 -0.40 -1.73 16 17 C 0.06 0.77 7.31 -39.37 -0.29 0.48 16 18 F -0.13 -1.78 17.18 2.25 0.04 -1.75 16 19 C 0.07 0.91 7.31 -39.37 -0.29 0.62 16 20 F -0.13 -1.90 17.18 2.25 0.04 -1.86 16 21 C -0.12 -1.51 7.74 -39.53 -0.31 -1.81 16 22 C 0.04 0.75 5.58 -3.71 -0.02 0.72 16 23 C 0.15 3.07 6.69 -3.60 -0.02 3.05 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.16 5.54 -51.93 -0.29 0.87 16 29 H 0.04 0.50 8.02 -51.93 -0.42 0.08 16 30 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 36 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -29.98 309.69 -8.52 -38.51 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.78 Total: -3.02 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.43 Total: -2.19 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -1.02 Total: -51.02 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.98 -8.52 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080723835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.135 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds