Wall clock time and date at job start Tue Mar 31 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.47304 * 2 1 4 4 C 1.46897 * 111.00089 * 164.00976 * 3 2 1 5 5 C 1.50704 * 109.47277 * 293.95516 * 4 3 2 6 6 H 1.08004 * 119.99902 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00218 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00311 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99661 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47107 * 89.99971 * 9 7 5 11 11 H 1.48507 * 109.46875 * 209.99935 * 9 7 5 12 12 H 1.48497 * 109.47284 * 329.99441 * 9 7 5 13 13 C 1.46897 * 111.00019 * 287.96578 * 3 2 1 14 14 C 1.50704 * 109.46950 * 175.72808 * 13 3 2 15 15 C 1.38483 * 120.00972 * 99.17752 * 14 13 3 16 16 F 1.35099 * 120.02648 * 0.02562 * 15 14 13 17 17 C 1.38438 * 119.94484 * 179.97438 * 15 14 13 18 18 C 1.38217 * 119.97673 * 0.02562 * 17 15 14 19 19 C 1.38223 * 120.02615 * 0.02562 * 18 17 15 20 20 C 1.38172 * 120.01500 * 278.90247 * 14 13 3 21 21 N 1.48012 * 119.98629 * 0.02562 * 20 14 13 22 22 O 1.21797 * 120.00021 * 186.56635 * 21 20 14 23 23 O 1.21800 * 119.99916 * 6.55709 * 21 20 14 24 24 H 1.08998 * 109.47124 * 65.39770 * 1 2 3 25 25 H 1.09001 * 109.46834 * 185.39262 * 1 2 3 26 26 H 1.09001 * 109.46925 * 305.39489 * 1 2 3 27 27 H 1.09002 * 109.47532 * 240.00158 * 2 1 3 28 28 H 1.09000 * 109.47378 * 120.00427 * 2 1 3 29 29 H 1.08998 * 109.46975 * 53.95399 * 4 3 2 30 30 H 1.08996 * 109.47092 * 173.95955 * 4 3 2 31 31 H 0.96999 * 119.99818 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47062 * 295.72875 * 13 3 2 33 33 H 1.08998 * 109.47209 * 55.73074 * 13 3 2 34 34 H 1.08001 * 120.00742 * 179.97438 * 17 15 14 35 35 H 1.07998 * 119.99008 * 179.97438 * 18 17 15 36 36 H 1.08000 * 119.98020 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4381 1.4418 0.3778 5 6 3.5938 1.0065 1.8121 6 1 2.7259 0.7162 2.3856 7 6 4.8444 0.9778 2.3920 8 7 4.9804 0.5974 3.6436 9 14 6.3456 1.4793 1.3999 10 1 6.5788 2.9374 1.5576 11 1 7.5331 0.7325 1.8873 12 1 6.1185 1.1665 -0.0339 13 6 1.7964 2.0223 -1.3045 14 6 2.2138 3.4687 -1.2349 15 6 3.4514 3.8566 -1.7203 16 9 4.2850 2.9389 -2.2569 17 6 3.8332 5.1858 -1.6562 18 6 2.9792 6.1239 -1.1075 19 6 1.7446 5.7354 -0.6224 20 6 1.3595 4.4093 -0.6920 21 7 0.0344 3.9958 -0.1782 22 8 -0.7657 4.8372 0.1897 23 8 -0.2560 2.8142 -0.1235 24 1 -0.3633 0.4278 -0.9344 25 1 -0.3633 -1.0231 0.0966 26 1 -0.3633 0.5952 0.8377 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 4.0130 0.7779 -0.2678 30 1 3.8031 2.4628 0.2664 31 1 5.8601 0.5776 4.0516 32 1 2.3861 1.5102 -2.0648 33 1 0.7392 1.9613 -1.5625 34 1 4.7983 5.4893 -2.0340 35 1 3.2770 7.1608 -1.0570 36 1 1.0781 6.4690 -0.1934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:48 Heat of formation + Delta-G solvation = -4.341010 kcal Electronic energy + Delta-G solvation = -23280.501798 eV Core-core repulsion = 19683.352949 eV Total energy + Delta-G solvation = -3597.148850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.11389 -41.93957 -39.36292 -37.18335 -36.08769 -32.79886 -32.35739 -31.40366 -29.90809 -27.96110 -26.47973 -24.82580 -22.60686 -22.18907 -22.08760 -19.83030 -19.06715 -18.39776 -17.32957 -17.00375 -16.65396 -16.48046 -16.17931 -15.80793 -14.93209 -14.48436 -14.24794 -13.82701 -13.48987 -13.04175 -12.82647 -12.68703 -12.50873 -12.39895 -12.05317 -11.72734 -11.24101 -11.10968 -10.95588 -10.73418 -10.62099 -10.56266 -10.33210 -10.07648 -9.92320 -9.60652 -9.29007 -9.02224 -8.60914 -7.41846 -6.09253 -4.06345 -0.05397 0.70825 1.46623 1.63754 3.06910 3.21098 3.29787 3.33219 3.87980 4.22917 4.36976 4.38346 4.46938 4.73013 4.85642 4.98965 5.22237 5.34282 5.47962 5.60632 5.72809 5.77070 5.79857 5.96120 6.07940 6.22649 6.23281 6.45988 6.64085 6.68957 6.83067 6.95338 7.05733 7.52844 7.84889 7.98173 8.03063 8.60757 9.00906 9.52291 11.03648 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.008393 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.185811 B = 3335.413717 C = 4258.541849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.061 3.939 3 N -0.508 5.508 4 C 0.158 3.842 5 C -0.507 4.507 6 H 0.084 0.916 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.865 3.135 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.073 3.927 14 C -0.035 4.035 15 C 0.106 3.894 16 F -0.120 7.120 17 C -0.108 4.108 18 C -0.096 4.096 19 C -0.070 4.070 20 C 0.000 4.000 21 N 0.029 4.971 22 O -0.193 6.193 23 O -0.098 6.098 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.018 0.982 28 H 0.093 0.907 29 H -0.009 1.009 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.107 0.893 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 9.580 -13.197 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 N -0.232 5.232 4 C 0.032 3.968 5 C -0.546 4.546 6 H 0.102 0.898 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.692 3.308 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.189 1.189 13 C -0.055 4.055 14 C -0.038 4.038 15 C 0.086 3.914 16 F -0.098 7.098 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.089 4.089 20 C -0.084 4.084 21 N 0.550 4.450 22 O -0.398 6.398 23 O -0.326 6.326 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.036 0.964 28 H 0.111 0.889 29 H 0.009 0.991 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.022 10.055 -12.945 16.878 hybrid contribution 1.459 -0.357 -0.910 1.756 sum -2.563 9.698 -13.854 17.105 Atomic orbital electron populations 1.21736 0.95436 1.00042 1.02376 1.21993 0.95140 0.88322 1.01169 1.62049 1.20788 1.17613 1.22765 1.20260 0.83621 0.95451 0.97462 1.21011 0.94864 1.44179 0.94498 0.89815 1.24869 0.98495 0.95003 0.94729 1.69886 1.23631 1.48009 1.12064 0.86996 0.83405 0.79004 0.81352 1.20294 1.20963 1.18945 1.21379 1.02737 0.87390 0.93959 1.19801 0.91588 0.97950 0.94440 1.17244 0.88043 0.86927 0.99224 1.91576 1.69610 1.65475 1.83122 1.21550 1.01442 0.91031 0.98698 1.20945 0.92256 1.00527 0.97802 1.21068 0.97351 0.93603 0.96889 1.20573 0.86366 0.94586 1.06833 1.43351 1.01912 1.00981 0.98782 1.94497 1.45296 1.48017 1.51978 1.94599 1.82179 1.00454 1.55399 0.93597 0.93607 0.91167 0.96395 0.88911 0.99146 0.96730 0.92634 0.94185 0.87501 0.83068 0.82833 0.82564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.61 37.16 0.32 -1.95 16 2 C 0.06 1.19 5.53 -3.82 -0.02 1.17 16 3 N -0.51 -10.72 3.69 -237.52 -0.88 -11.60 16 4 C 0.16 3.87 3.44 -4.98 -0.02 3.85 16 5 C -0.51 -14.49 8.84 -34.44 -0.30 -14.79 16 6 H 0.08 2.61 7.50 -52.48 -0.39 2.21 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 9 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.07 1.29 3.89 -4.98 -0.02 1.27 16 14 C -0.04 -0.58 4.41 -104.55 -0.46 -1.04 16 15 C 0.11 1.62 5.95 -39.42 -0.23 1.39 16 16 F -0.12 -1.99 16.19 2.25 0.04 -1.95 16 17 C -0.11 -1.24 10.03 -39.52 -0.40 -1.64 16 18 C -0.10 -0.95 10.04 -39.59 -0.40 -1.35 16 19 C -0.07 -0.85 9.56 -39.58 -0.38 -1.23 16 20 C 0.00 0.00 6.83 -79.96 -0.55 -0.54 16 21 N 0.03 0.51 4.45 33.95 0.15 0.66 16 22 O -0.19 -3.32 18.47 -29.46 -0.54 -3.87 16 23 O -0.10 -1.80 12.26 -29.46 -0.36 -2.16 16 24 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.25 7.39 -51.93 -0.38 0.87 16 27 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 28 H 0.09 2.03 6.59 -51.93 -0.34 1.69 16 29 H -0.01 -0.23 7.18 -51.93 -0.37 -0.60 16 30 H 0.01 0.36 5.26 -51.93 -0.27 0.09 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.04 0.69 7.39 -51.93 -0.38 0.31 16 33 H 0.11 1.76 4.65 -51.93 -0.24 1.51 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.16 1.58 7.63 -52.49 -0.40 1.18 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -32.31 300.62 -7.50 -39.80 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -3.99 Total: -2.64 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.55 Total: -12.91 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.05 Total: -37.72 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.91 Total: -6.03 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.31 -7.50 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.464 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds