Wall clock time and date at job start Tue Mar 31 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46895 * 109.47304 * 2 1 4 4 C 1.46900 * 111.00233 * 299.93621 * 3 2 1 5 5 C 1.50698 * 109.47191 * 162.44383 * 4 3 2 6 6 H 1.08006 * 120.00074 * 357.01534 * 5 4 3 7 7 C 1.37874 * 120.00080 * 177.01203 * 5 4 3 8 8 N 1.31513 * 119.99841 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00086 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47235 * 89.99996 * 9 7 5 11 11 H 1.48498 * 109.47244 * 210.00024 * 9 7 5 12 12 H 1.48496 * 109.47086 * 329.99936 * 9 7 5 13 13 C 1.46907 * 111.00068 * 175.97923 * 3 2 1 14 14 C 1.50698 * 109.47245 * 293.95642 * 13 3 2 15 15 C 1.38215 * 120.01348 * 259.72656 * 14 13 3 16 16 C 1.38224 * 120.02398 * 179.72086 * 15 14 13 17 17 C 1.38264 * 120.05228 * 0.55591 * 16 15 14 18 18 N 1.48009 * 119.98986 * 179.70257 * 17 16 15 19 19 O 1.21792 * 120.00060 * 180.02562 * 18 17 16 20 20 O 1.21798 * 119.99475 * 0.02562 * 18 17 16 21 21 C 1.38176 * 120.02359 * 359.71684 * 17 16 15 22 22 C 1.38437 * 120.01015 * 79.99931 * 14 13 3 23 23 F 1.35093 * 120.02927 * 0.02562 * 22 14 13 24 24 H 1.09000 * 109.47296 * 186.94232 * 1 2 3 25 25 H 1.09003 * 109.46848 * 306.94308 * 1 2 3 26 26 H 1.08999 * 109.47219 * 66.94215 * 1 2 3 27 27 H 1.09001 * 109.46876 * 240.00360 * 2 1 3 28 28 H 1.09001 * 109.47434 * 120.00360 * 2 1 3 29 29 H 1.08996 * 109.47189 * 282.44179 * 4 3 2 30 30 H 1.08993 * 109.47034 * 42.44314 * 4 3 2 31 31 H 0.97008 * 119.99731 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46749 * 53.95844 * 13 3 2 33 33 H 1.09002 * 109.46972 * 173.95371 * 13 3 2 34 34 H 1.08005 * 119.98908 * 0.02562 * 15 14 13 35 35 H 1.08004 * 119.97263 * 180.27051 * 16 15 14 36 36 H 1.07997 * 120.00792 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5499 2.1094 -1.1884 5 6 1.6892 3.5925 -0.9602 6 1 2.0414 3.9617 -0.0083 7 6 1.3670 4.4781 -1.9667 8 7 0.9387 4.0285 -3.1259 9 14 1.5389 6.3165 -1.6836 10 1 2.9032 6.7524 -2.0759 11 1 0.5335 7.0397 -2.5029 12 1 1.3166 6.6190 -0.2468 13 6 3.4850 1.4252 0.0962 14 6 3.9152 0.8928 1.4387 15 6 4.2574 1.7681 2.4522 16 6 4.6464 1.2801 3.6855 17 6 4.7048 -0.0840 3.9034 18 7 5.1279 -0.6051 5.2225 19 8 5.1798 -1.8067 5.4145 20 8 5.4241 0.1678 6.1160 21 6 4.3685 -0.9610 2.8899 22 6 3.9731 -0.4732 1.6557 23 9 3.6447 -1.3298 0.6640 24 1 -0.3634 -1.0201 0.1242 25 1 -0.3633 0.6177 0.8214 26 1 -0.3633 0.4025 -0.9456 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.1474 1.8171 -2.0519 30 1 0.5033 1.8667 -1.3718 31 1 0.7123 4.6516 -3.8342 32 1 3.9179 0.8115 -0.6938 33 1 3.8282 2.4540 -0.0137 34 1 4.2161 2.8339 2.2819 35 1 4.9095 1.9649 4.4782 36 1 4.4138 -2.0265 3.0605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:50 Heat of formation + Delta-G solvation = -14.475592 kcal Electronic energy + Delta-G solvation = -22022.876146 eV Core-core repulsion = 18425.287828 eV Total energy + Delta-G solvation = -3597.588318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.34523 -42.30917 -39.57982 -37.09308 -36.70557 -33.05202 -32.55455 -31.16488 -30.12910 -28.10189 -26.33690 -24.30347 -23.52051 -22.78587 -21.91859 -19.86313 -19.66751 -18.86909 -17.68784 -16.85672 -16.72863 -16.56479 -16.17070 -16.07907 -14.85470 -14.49598 -14.32953 -13.88281 -13.80685 -13.46742 -13.00958 -12.69884 -12.33657 -12.13585 -11.83836 -11.68447 -11.46822 -11.29896 -11.27879 -11.14141 -10.97909 -10.92409 -10.70355 -10.33065 -9.94678 -9.61855 -9.38498 -9.23148 -8.53866 -7.51650 -6.14403 -4.16981 -0.35923 0.61693 1.16527 1.20046 2.96284 3.22553 3.30385 3.33013 3.74248 4.14702 4.29856 4.32119 4.44793 4.63459 4.82935 4.89219 5.20731 5.31067 5.39717 5.52692 5.58248 5.61867 5.75703 5.94859 6.00125 6.07902 6.15900 6.23445 6.34104 6.46187 6.67406 7.05389 7.17728 7.49651 7.65244 7.89061 7.98257 8.35165 8.90044 9.47917 10.95921 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.004406 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.186139 B = 6353.277374 C = 7237.351040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 N -0.528 5.528 4 C 0.187 3.813 5 C -0.511 4.511 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.087 3.913 14 C -0.036 4.036 15 C -0.074 4.074 16 C -0.062 4.062 17 C -0.031 4.031 18 N 0.033 4.967 19 O -0.163 6.163 20 O -0.158 6.158 21 C -0.095 4.095 22 C 0.105 3.895 23 F -0.118 7.118 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.061 0.939 29 H -0.004 1.004 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -7.585 9.760 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 N -0.253 5.253 4 C 0.063 3.937 5 C -0.550 4.550 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.040 4.040 14 C -0.038 4.038 15 C -0.093 4.093 16 C -0.081 4.081 17 C -0.114 4.114 18 N 0.552 4.448 19 O -0.379 6.379 20 O -0.374 6.374 21 C -0.115 4.115 22 C 0.084 3.916 23 F -0.096 7.096 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.014 0.986 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.167 -7.079 9.292 13.209 hybrid contribution 0.372 0.209 -0.540 0.688 sum 6.538 -6.870 8.752 12.905 Atomic orbital electron populations 1.21814 0.95268 1.00312 1.03064 1.22346 0.96204 0.90691 0.99488 1.62341 1.05640 1.12092 1.45197 1.19883 0.96200 0.93219 0.84387 1.21127 1.44343 0.90370 0.99144 0.91849 1.24987 0.95283 0.99168 0.95039 1.69950 1.44841 1.34867 1.03923 0.86518 0.77803 0.84937 0.78291 1.20708 1.21217 1.19737 1.21120 0.91274 1.02609 0.89038 1.20795 0.92981 0.91041 0.98995 1.21117 0.96542 1.01607 0.90011 1.21145 0.95597 0.92413 0.98968 1.20670 1.12087 0.94358 0.84322 1.43522 0.97928 1.00809 1.02555 1.94538 1.57241 0.98360 1.87728 1.94538 1.51304 1.55050 1.36523 1.20776 0.98098 1.02022 0.90614 1.17129 1.01762 0.87405 0.85310 1.91566 1.89523 1.69407 1.59099 0.93427 0.92057 0.91911 0.95585 0.92121 0.98598 0.94078 0.92797 0.93709 0.87472 0.82001 0.82398 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.53 37.16 0.35 -2.09 16 2 C 0.04 0.71 4.33 -3.83 -0.02 0.69 16 3 N -0.53 -10.25 4.48 -237.52 -1.06 -11.31 16 4 C 0.19 4.48 4.61 -4.98 -0.02 4.46 16 5 C -0.51 -13.20 8.46 -34.44 -0.29 -13.49 16 6 H 0.06 1.59 7.75 -52.48 -0.41 1.19 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.09 1.45 4.84 -4.97 -0.02 1.42 16 14 C -0.04 -0.49 5.17 -104.56 -0.54 -1.03 16 15 C -0.07 -0.84 9.67 -39.59 -0.38 -1.22 16 16 C -0.06 -0.66 9.55 -39.58 -0.38 -1.04 16 17 C -0.03 -0.37 6.85 -79.96 -0.55 -0.92 16 18 N 0.03 0.44 4.45 33.95 0.15 0.59 16 19 O -0.16 -2.29 18.45 -29.46 -0.54 -2.83 16 20 O -0.16 -2.16 18.45 -29.46 -0.54 -2.71 16 21 C -0.10 -1.11 9.54 -39.51 -0.38 -1.49 16 22 C 0.10 1.35 5.88 -39.42 -0.23 1.12 16 23 F -0.12 -1.61 13.87 2.25 0.03 -1.58 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.14 6.43 -51.93 -0.33 0.80 16 27 H 0.03 0.46 8.00 -51.93 -0.42 0.04 16 28 H 0.06 0.96 4.69 -51.93 -0.24 0.72 16 29 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 30 H 0.04 1.05 5.72 -51.93 -0.30 0.75 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.11 1.83 7.15 -51.93 -0.37 1.46 16 34 H 0.16 1.60 8.04 -52.48 -0.42 1.18 16 35 H 0.16 1.37 7.61 -52.48 -0.40 0.97 16 36 H 0.16 1.64 7.61 -52.49 -0.40 1.25 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -28.30 311.28 -8.21 -36.51 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.10 Total: -1.96 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.56 Total: -12.17 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.18 Total: -35.31 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -1.09 Total: -5.54 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.30 -8.21 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.037 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds