Wall clock time and date at job start Tue Mar 31 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30131 * 121.06590 * 2 1 4 4 S 1.69946 * 105.76757 * 179.97438 * 3 2 1 5 5 C 1.72298 * 94.57476 * 0.02562 * 4 3 2 6 6 N 1.38314 * 127.50414 * 180.02562 * 5 4 3 7 7 C 1.46948 * 111.00118 * 0.02562 * 6 5 4 8 8 C 1.53049 * 109.36764 * 183.19135 * 7 6 5 9 9 N 1.46961 * 109.36177 * 301.59566 * 8 7 6 10 10 C 1.46896 * 111.00124 * 183.18463 * 9 8 7 11 11 C 1.52996 * 109.47256 * 170.00033 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46956 * 110.87704 * 59.32220 * 9 8 7 21 21 C 1.46963 * 111.00054 * 123.82263 * 6 5 4 22 22 N 1.31289 * 121.06185 * 180.29568 * 2 1 3 23 23 H 1.09003 * 109.47286 * 90.02361 * 1 2 3 24 24 H 1.08996 * 109.47057 * 210.02220 * 1 2 3 25 25 H 1.09005 * 109.47398 * 330.02706 * 1 2 3 26 26 H 1.08999 * 109.48998 * 63.22205 * 7 6 5 27 27 H 1.09002 * 109.48626 * 303.15730 * 7 6 5 28 28 H 1.09001 * 109.49268 * 181.63226 * 8 7 6 29 29 H 1.09000 * 109.49067 * 61.56179 * 8 7 6 30 30 H 1.09004 * 109.46774 * 50.00232 * 10 9 8 31 31 H 1.09000 * 109.47723 * 290.00621 * 10 9 8 32 32 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 33 33 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.49195 * 60.64478 * 20 9 8 36 36 H 1.09002 * 109.48564 * 180.71036 * 20 9 8 37 37 H 1.09000 * 109.48524 * 296.77719 * 21 6 5 38 38 H 1.09001 * 109.48887 * 56.81888 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1147 0.0000 4 16 3.8177 0.6663 0.0007 5 6 3.4971 -1.0266 0.0002 6 7 4.4185 -2.0582 0.0010 7 6 5.7925 -1.5370 0.0029 8 6 6.7784 -2.7049 -0.0767 9 7 6.5586 -3.6066 1.0628 10 6 7.5372 -4.7022 1.0636 11 6 7.4412 -5.4709 2.3829 12 6 8.4455 -6.5945 2.3840 13 1 9.0883 -6.7450 1.5292 14 6 8.5480 -7.4265 3.4787 15 7 7.7655 -7.2429 4.5196 16 14 9.7982 -8.8144 3.4830 17 1 11.0808 -8.3235 4.0479 18 1 9.2894 -9.9363 4.3123 19 1 10.0183 -9.2869 2.0925 20 6 5.1846 -4.1278 1.0608 21 6 4.1987 -2.9598 1.1405 22 7 2.1844 -1.1246 -0.0058 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 5.9672 -0.9756 0.9207 27 1 5.9342 -0.8822 -0.8569 28 1 7.7986 -2.3224 -0.0461 29 1 6.6218 -3.2503 -1.0074 30 1 8.5413 -4.2925 0.9540 31 1 7.3277 -5.3772 0.2337 32 1 6.4370 -5.8806 2.4925 33 1 7.6508 -4.7960 3.2127 34 1 7.8374 -7.8285 5.2897 35 1 5.0099 -4.6892 0.1430 36 1 5.0428 -4.7826 1.9206 37 1 4.3554 -2.4145 2.0712 38 1 3.1784 -3.3421 1.1103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081576987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:14 Heat of formation + Delta-G solvation = 64.832092 kcal Electronic energy + Delta-G solvation = -19605.681932 eV Core-core repulsion = 16610.038580 eV Total energy + Delta-G solvation = -2995.643352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64185 -39.35282 -36.14341 -33.21763 -32.13966 -31.16062 -29.97723 -29.85480 -26.91846 -24.15499 -24.05216 -22.99632 -20.68637 -19.93534 -19.78630 -18.98058 -17.28971 -16.39172 -15.98198 -15.05646 -14.98478 -14.86490 -14.56817 -14.47361 -14.09877 -13.92714 -13.01338 -12.91125 -12.76738 -12.38846 -12.14164 -12.01908 -11.79735 -11.46781 -11.39669 -11.24592 -11.01564 -10.82554 -10.77907 -10.57197 -9.96589 -9.87945 -9.54163 -9.45381 -9.18899 -8.65423 -8.38469 -7.94867 -6.04870 -4.07534 0.29241 0.87245 1.54050 2.37785 2.84694 3.29061 3.35683 3.38299 4.06218 4.16076 4.45151 4.61523 4.85850 4.94163 5.02154 5.13555 5.22217 5.24806 5.29840 5.31454 5.42422 5.54167 5.61196 5.76227 5.80108 5.95537 6.07067 6.12374 6.30318 6.37919 6.42208 6.84820 7.28876 7.36489 7.47788 7.68549 7.79958 7.99678 8.36345 8.99364 9.56609 11.06402 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.041645 B = 0.003089 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.195719 B = 9062.615691 C = 9451.973482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.288 3.712 3 N -0.493 5.493 4 S 0.178 5.822 5 C 0.284 3.716 6 N -0.430 5.430 7 C 0.046 3.954 8 C 0.057 3.943 9 N -0.541 5.541 10 C 0.064 3.936 11 C 0.028 3.972 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.054 3.946 21 C 0.067 3.933 22 N -0.542 5.542 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.043 0.957 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 14.145 -9.459 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.002 4.002 3 N -0.326 5.326 4 S 0.315 5.685 5 C -0.095 4.095 6 N -0.150 5.150 7 C -0.082 4.082 8 C -0.072 4.072 9 N -0.267 5.267 10 C -0.062 4.062 11 C -0.010 4.010 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.074 4.074 21 C -0.059 4.059 22 N -0.271 5.271 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.726 15.247 -9.285 20.329 hybrid contribution 0.233 -1.714 -0.207 1.742 sum -9.493 13.533 -9.492 19.062 Atomic orbital electron populations 1.20403 0.83765 1.04406 1.04133 1.23428 1.00030 0.82275 0.94510 1.77504 0.98061 1.25921 1.31105 1.85067 1.13056 1.01660 1.68701 1.27128 0.92398 0.95786 0.94166 1.58221 1.02627 1.12448 1.41707 1.22697 0.84094 0.98317 1.03054 1.22119 0.98211 0.93225 0.93606 1.62335 1.03410 1.20391 1.40526 1.22353 0.93240 0.89913 1.00741 1.19100 0.97095 0.93966 0.90791 1.21168 1.19744 1.13489 1.01848 0.92757 1.24990 0.95997 0.97730 0.95550 1.69964 1.38522 1.38761 1.05897 0.86592 0.81554 0.81842 0.77991 1.20629 1.21211 1.19917 1.22268 0.87509 0.94813 1.02852 1.22550 1.01571 0.93181 0.88649 1.67380 1.03715 1.29685 1.26327 0.89441 0.89163 0.89587 0.91011 0.89118 0.89114 0.93846 0.91731 0.95763 0.96464 0.95668 0.92941 0.93859 0.87782 0.91779 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.00 0.37 -0.16 16 2 C 0.29 3.56 7.56 -159.04 -1.20 2.36 16 3 N -0.49 -6.54 12.15 29.54 0.36 -6.18 16 4 S 0.18 2.14 22.19 -107.50 -2.38 -0.25 16 5 C 0.28 3.72 7.02 -86.35 -0.61 3.12 16 6 N -0.43 -5.55 4.77 -174.38 -0.83 -6.38 16 7 C 0.05 0.52 4.71 -3.77 -0.02 0.50 16 8 C 0.06 0.73 5.61 -3.77 -0.02 0.71 16 9 N -0.54 -8.83 4.71 -234.47 -1.10 -9.93 16 10 C 0.06 1.24 4.90 -3.83 -0.02 1.22 16 11 C 0.03 0.68 4.91 -27.88 -0.14 0.55 16 12 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 16 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.05 0.83 5.41 -3.77 -0.02 0.81 16 21 C 0.07 0.90 5.53 -3.76 -0.02 0.88 16 22 N -0.54 -7.42 10.44 -14.57 -0.15 -7.57 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 27 H 0.09 0.85 7.74 -51.93 -0.40 0.45 16 28 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 31 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.02 0.44 6.49 -51.93 -0.34 0.11 16 33 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.77 6.34 -51.93 -0.33 1.44 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.27 8.01 -51.93 -0.42 0.86 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -30.65 322.89 -11.27 -41.92 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.66 Total: -4.14 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.08 Total: -3.07 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.99 Total: -55.48 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.38 Total: -0.25 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.65 -11.27 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081576987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.754 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds