Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46861 * 2 1 4 4 C 1.50703 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.30126 * 121.06081 * 89.97123 * 4 3 2 6 6 S 1.69952 * 105.76646 * 180.02562 * 5 4 3 7 7 C 1.72307 * 94.57264 * 0.02562 * 6 5 4 8 8 N 1.38312 * 127.50489 * 179.97438 * 7 6 5 9 9 C 1.46899 * 110.99924 * 0.03093 * 8 7 6 10 10 C 1.53242 * 109.36244 * 172.75990 * 9 8 7 11 11 N 1.47077 * 108.52164 * 53.81189 * 10 9 8 12 12 C 1.36941 * 120.87625 * 128.79340 * 11 10 9 13 13 H 1.08001 * 119.99887 * 206.58592 * 12 11 10 14 14 C 1.38806 * 119.99985 * 26.59562 * 12 11 10 15 15 N 1.31617 * 120.00610 * 17.00428 * 14 12 11 16 16 Si 1.86810 * 119.99771 * 197.00825 * 14 12 11 17 17 H 1.48498 * 109.46957 * 89.99518 * 16 14 12 18 18 H 1.48497 * 109.46742 * 209.99997 * 16 14 12 19 19 H 1.48499 * 109.46833 * 329.99780 * 16 14 12 20 20 C 1.47080 * 118.23818 * 308.81667 * 11 10 9 21 21 C 1.46893 * 111.02476 * 235.71045 * 8 7 6 22 22 N 1.31286 * 121.06447 * 270.27149 * 4 3 2 23 23 H 1.09003 * 109.47397 * 300.00211 * 1 2 3 24 24 H 1.08999 * 109.46971 * 59.99955 * 1 2 3 25 25 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.46957 * 239.99815 * 2 1 3 27 27 H 1.09003 * 109.46789 * 119.99577 * 2 1 3 28 28 H 1.09001 * 109.47515 * 60.00217 * 3 2 1 29 29 H 1.08999 * 109.47364 * 299.99804 * 3 2 1 30 30 H 1.09000 * 109.49426 * 52.78296 * 9 8 7 31 31 H 1.09006 * 109.49087 * 292.73203 * 9 8 7 32 32 H 1.09003 * 109.63004 * 173.52716 * 10 9 8 33 33 H 1.09003 * 109.62204 * 294.10124 * 10 9 8 34 34 H 0.96999 * 120.00314 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.62549 * 170.89390 * 20 11 10 36 36 H 1.08998 * 109.62831 * 291.47255 * 20 11 10 37 37 H 1.08997 * 109.47403 * 67.26329 * 21 8 7 38 38 H 1.08999 * 109.51108 * 307.21650 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2188 1.4418 -1.1138 6 16 5.8580 1.4414 -0.6648 7 6 5.5367 1.4415 1.0281 8 7 6.4577 1.4407 2.0600 9 6 7.8314 1.4406 1.5395 10 6 8.8147 1.6220 2.7008 11 7 8.5339 0.5950 3.7155 12 6 9.5352 -0.1990 4.2076 13 1 9.3057 -1.1821 4.5912 14 6 10.8453 0.2598 4.2135 15 7 11.0934 1.5445 4.0703 16 14 12.2563 -0.9461 4.4245 17 1 12.6949 -1.4328 3.0919 18 1 13.3903 -0.2673 5.1016 19 1 11.8051 -2.0966 5.2479 20 6 7.1491 0.4430 4.1872 21 6 6.2315 0.3080 2.9674 22 7 4.2239 1.4374 1.1255 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.9516 2.2591 0.8299 31 1 8.0305 0.4930 1.0389 32 1 9.8359 1.5080 2.3371 33 1 8.6869 2.6126 3.1372 34 1 12.0089 1.8650 4.0741 35 1 7.0692 -0.4505 4.8062 36 1 6.8613 1.3203 4.7666 37 1 6.4526 -0.6240 2.4473 38 1 5.1914 0.3046 3.2933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087639823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = 77.221369 kcal Electronic energy + Delta-G solvation = -19926.525117 eV Core-core repulsion = 16931.419005 eV Total energy + Delta-G solvation = -2995.106112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31435 -38.58503 -35.25155 -34.43528 -31.93271 -31.06943 -30.21088 -28.37974 -27.02011 -24.08487 -23.23106 -22.78136 -21.60758 -19.63923 -19.39883 -18.67774 -17.27944 -16.21396 -15.47768 -15.06323 -14.92640 -14.72374 -14.42367 -14.16277 -13.67115 -13.43010 -13.30157 -12.88051 -12.50346 -12.22208 -11.89330 -11.69325 -11.46191 -11.33930 -11.27689 -10.89347 -10.87546 -10.75652 -10.63507 -10.54645 -10.34165 -9.99486 -9.95777 -9.54494 -9.23344 -8.65144 -8.21257 -6.90706 -5.94285 -3.37168 0.63923 1.23096 1.86137 2.68151 3.27006 3.31382 3.38167 3.39114 4.33362 4.38005 4.80159 4.85287 4.98810 5.14643 5.21618 5.31778 5.43052 5.46601 5.52874 5.59067 5.60091 5.73989 5.77078 5.80840 5.89807 5.99729 6.01239 6.10288 6.14293 6.31935 6.60578 6.80416 6.91890 7.12749 7.38705 7.65606 7.81550 8.24584 9.02604 9.64846 10.21331 11.15303 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.033865 B = 0.003829 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.622584 B = 7311.518503 C = 7693.571031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.030 4.030 4 C 0.290 3.710 5 N -0.500 5.500 6 S 0.166 5.834 7 C 0.290 3.710 8 N -0.419 5.419 9 C 0.020 3.980 10 C 0.179 3.821 11 N -0.595 5.595 12 C -0.259 4.259 13 H 0.070 0.930 14 C 0.005 3.995 15 N -0.902 5.902 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.146 3.854 21 C 0.052 3.948 22 N -0.549 5.549 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.257 0.743 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.050 0.950 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 -1.239 -7.536 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.073 4.073 4 C -0.001 4.001 5 N -0.332 5.332 6 S 0.304 5.696 7 C -0.089 4.089 8 N -0.138 5.138 9 C -0.109 4.109 10 C 0.053 3.947 11 N -0.318 5.318 12 C -0.388 4.388 13 H 0.088 0.912 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.736 3.264 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.203 1.203 20 C 0.019 3.981 21 C -0.077 4.077 22 N -0.279 5.279 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.050 -0.742 -8.405 16.389 hybrid contribution 0.468 -0.910 0.520 1.148 sum -13.582 -1.652 -7.885 15.792 Atomic orbital electron populations 1.21745 0.94982 1.01918 1.02008 1.21461 0.96124 0.95190 1.02801 1.20260 0.83922 0.98881 1.04211 1.23312 0.99503 0.94719 0.82550 1.77443 0.98242 1.31519 1.25991 1.85108 1.12693 1.69271 1.02569 1.27480 0.92440 0.93170 0.95764 1.58011 1.03146 1.40987 1.11620 1.23537 0.84814 1.01439 1.01076 1.20944 0.96304 0.91912 0.85588 1.44173 1.02822 1.40980 1.43831 1.19208 0.86516 0.95446 1.37630 0.91185 1.25061 0.98361 0.95570 1.00431 1.69995 1.19409 1.11662 1.53550 0.86237 0.81952 0.80401 0.77858 1.21302 1.21634 1.20344 1.21081 0.85157 1.00002 0.91898 1.22986 1.01906 0.88167 0.94625 1.67370 1.03740 1.27330 1.29441 0.92388 0.92568 0.92463 0.91712 0.91345 0.88923 0.89358 0.90347 0.92432 0.87908 0.94631 0.93313 0.91186 0.94818 0.93124 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 3 C -0.03 -0.33 5.75 -27.88 -0.16 -0.49 16 4 C 0.29 4.36 6.82 -159.04 -1.08 3.28 16 5 N -0.50 -8.00 12.15 29.54 0.36 -7.64 16 6 S 0.17 2.61 22.15 -107.50 -2.38 0.22 16 7 C 0.29 4.92 7.02 -86.36 -0.61 4.32 16 8 N -0.42 -7.47 4.69 -174.24 -0.82 -8.28 16 9 C 0.02 0.36 4.75 -3.70 -0.02 0.34 16 10 C 0.18 3.97 5.42 -3.60 -0.02 3.95 16 11 N -0.60 -13.97 3.04 -172.02 -0.52 -14.49 16 12 C -0.26 -6.67 9.63 -15.06 -0.15 -6.81 16 13 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 14 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 15 N -0.90 -24.77 11.15 55.49 0.62 -24.15 16 16 Si 0.91 20.66 29.59 -169.99 -5.03 15.63 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.15 2.86 6.69 -3.60 -0.02 2.83 16 21 C 0.05 0.89 5.54 -3.71 -0.02 0.87 16 22 N -0.55 -9.14 10.34 -14.57 -0.15 -9.29 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.28 7.52 -51.93 -0.39 0.89 16 31 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.10 2.51 6.12 -51.93 -0.32 2.19 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.38 7.88 -51.93 -0.41 0.97 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -28.43 322.04 -10.75 -39.18 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.73 Total: -2.31 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.95 Total: 6.27 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -0.51 Total: -63.86 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.38 Total: 0.22 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.43 -10.75 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087639823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.399 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds