Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47004 * 2 1 4 4 N 1.30127 * 121.06172 * 90.02378 * 3 2 1 5 5 S 1.69948 * 105.76207 * 179.97438 * 4 3 2 6 6 C 1.72293 * 94.57711 * 0.02562 * 5 4 3 7 7 N 1.38318 * 127.50665 * 180.02562 * 6 5 4 8 8 C 1.46493 * 119.99821 * 359.97167 * 7 6 5 9 9 C 1.53038 * 109.46666 * 275.07158 * 8 7 6 10 10 C 1.53190 * 109.31730 * 178.61450 * 9 8 7 11 11 N 1.46921 * 108.77361 * 54.63526 * 10 9 8 12 12 C 1.36935 * 120.62988 * 126.37198 * 11 10 9 13 13 H 1.08000 * 120.00321 * 331.85332 * 12 11 10 14 14 C 1.38816 * 119.99763 * 151.85872 * 12 11 10 15 15 N 1.31615 * 120.00611 * 343.06582 * 14 12 11 16 16 Si 1.86803 * 119.99681 * 163.06582 * 14 12 11 17 17 H 1.48499 * 109.47406 * 89.99875 * 16 14 12 18 18 H 1.48503 * 109.47246 * 209.99818 * 16 14 12 19 19 H 1.48497 * 109.47327 * 329.99862 * 16 14 12 20 20 C 1.46933 * 118.74026 * 306.38837 * 11 10 9 21 21 C 1.53041 * 109.46292 * 155.00102 * 8 7 6 22 22 N 1.31283 * 121.06108 * 269.99563 * 3 2 1 23 23 H 1.09003 * 109.46994 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47187 * 300.00091 * 1 2 3 25 25 H 1.08998 * 109.46837 * 60.00365 * 1 2 3 26 26 H 1.08999 * 109.47667 * 239.99748 * 2 1 3 27 27 H 1.09003 * 109.47264 * 119.99700 * 2 1 3 28 28 H 0.96999 * 120.00060 * 179.97438 * 7 6 5 29 29 H 1.09003 * 109.45940 * 35.03030 * 8 7 6 30 30 H 1.09010 * 109.49407 * 298.56781 * 9 8 7 31 31 H 1.09003 * 109.49601 * 58.65981 * 9 8 7 32 32 H 1.09002 * 109.58479 * 294.84516 * 10 9 8 33 33 H 1.09002 * 109.70245 * 174.49271 * 10 9 8 34 34 H 0.96995 * 120.00450 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.58393 * 293.82386 * 20 11 10 36 36 H 1.08994 * 109.70481 * 173.46611 * 20 11 10 37 37 H 1.09007 * 109.49530 * 301.33911 * 21 8 7 38 38 H 1.08997 * 109.49821 * 61.40147 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2565 2.0537 1.1147 5 16 2.8034 3.5991 0.6662 6 6 2.6954 3.2972 -1.0266 7 7 3.0029 4.1658 -2.0582 8 6 3.4817 5.5177 -1.7593 9 6 2.2850 6.4436 -1.5301 10 6 2.7897 7.8479 -1.1839 11 7 3.7050 8.2956 -2.2424 12 6 3.5041 9.4914 -2.8787 13 1 2.5062 9.8946 -2.9680 14 6 4.5831 10.1852 -3.4091 15 7 5.8075 9.8894 -3.0279 16 14 4.2971 11.5389 -4.6643 17 1 4.1260 12.8364 -3.9627 18 1 5.4643 11.6208 -5.5787 19 1 3.0736 11.2357 -5.4493 20 6 4.8399 7.4359 -2.6054 21 6 4.3120 6.0362 -2.9357 22 7 2.2582 2.0595 -1.1246 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9013 3.8799 -2.9795 29 1 4.0993 5.4939 -0.8615 30 1 1.6802 6.4874 -2.4360 31 1 1.6812 6.0608 -0.7072 32 1 3.3181 7.8216 -0.2308 33 1 1.9464 8.5350 -1.1152 34 1 6.5614 10.3744 -3.3982 35 1 5.5354 7.3760 -1.7683 36 1 5.3501 7.8487 -3.4756 37 1 5.1512 5.3635 -3.1132 38 1 3.6884 6.0834 -3.8284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087639878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = 64.456645 kcal Electronic energy + Delta-G solvation = -19797.937860 eV Core-core repulsion = 16802.278228 eV Total energy + Delta-G solvation = -2995.659632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13112 -38.43604 -35.65953 -33.48706 -32.30593 -31.10888 -30.20877 -29.35638 -25.77209 -24.83579 -23.05332 -22.35473 -21.95729 -20.16662 -19.16511 -18.60544 -17.06668 -16.74811 -15.50703 -15.43022 -14.90937 -14.54822 -14.16345 -14.05960 -13.75671 -13.40530 -13.12043 -12.67425 -12.63391 -12.21126 -11.69238 -11.64656 -11.40003 -11.30516 -11.23588 -11.15358 -10.98614 -10.79769 -10.54660 -10.39894 -10.10562 -9.86877 -9.77503 -9.53770 -9.31333 -8.58970 -8.03499 -6.82480 -5.90723 -3.33489 0.86157 1.11924 1.90972 2.76567 2.82827 3.31410 3.39062 3.40869 4.26599 4.40544 4.90891 4.95794 5.08603 5.14473 5.20583 5.28676 5.34973 5.48543 5.58427 5.64887 5.77718 5.85207 5.88043 6.02802 6.05475 6.18273 6.24227 6.28190 6.39416 6.60209 6.74341 6.79646 7.13498 7.22650 7.47493 7.69975 7.86374 8.32669 9.08808 9.71441 10.27097 11.18483 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.047283 B = 0.003421 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.041976 B = 8183.824264 C = 8230.338768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 C 0.306 3.694 4 N -0.514 5.514 5 S 0.178 5.822 6 C 0.351 3.649 7 N -0.657 5.657 8 C 0.150 3.850 9 C -0.147 4.147 10 C 0.148 3.852 11 N -0.592 5.592 12 C -0.257 4.257 13 H 0.067 0.933 14 C 0.004 3.996 15 N -0.902 5.902 16 Si 0.903 3.097 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.174 3.826 21 C -0.146 4.146 22 N -0.596 5.596 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.412 0.588 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.255 0.745 35 H 0.024 0.976 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 -15.247 3.402 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C 0.016 3.984 4 N -0.347 5.347 5 S 0.312 5.688 6 C -0.029 4.029 7 N -0.293 5.293 8 C 0.046 3.954 9 C -0.188 4.188 10 C 0.020 3.980 11 N -0.314 5.314 12 C -0.386 4.386 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.732 3.268 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.204 1.204 20 C 0.048 3.952 21 C -0.186 4.186 22 N -0.333 5.333 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.250 0.750 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.876 -14.684 4.610 16.474 hybrid contribution -0.235 0.164 -1.891 1.913 sum -6.111 -14.520 2.718 15.986 Atomic orbital electron populations 1.21693 0.93626 1.02284 1.02612 1.20144 0.96612 0.86914 1.04032 1.23091 0.94089 0.98742 0.82519 1.77466 1.30047 1.01836 1.25366 1.85106 1.65957 1.19465 0.98307 1.25276 0.91604 0.90200 0.95802 1.44677 1.67043 1.11939 1.05643 1.21510 0.95924 0.77488 1.00439 1.22550 0.96822 0.97814 1.01608 1.20878 0.94131 0.91548 0.91410 1.44093 1.29042 1.19348 1.38926 1.19166 0.92411 0.96815 1.30203 0.91538 1.25060 0.95554 0.97968 1.00859 1.70001 0.97859 1.43197 1.43571 0.86297 0.77262 0.81860 0.81349 1.21291 1.21502 1.20436 1.20774 0.89073 0.84623 1.00766 1.22575 0.98652 1.00986 0.96350 1.67365 1.29613 1.06353 1.29937 0.91513 0.92326 0.92164 0.89131 0.89382 0.74962 0.90059 0.91414 0.92621 0.95911 0.92046 0.93455 0.95796 0.88634 0.92162 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.03 -0.35 6.47 -27.88 -0.18 -0.53 16 3 C 0.31 4.31 6.82 -159.04 -1.08 3.22 16 4 N -0.51 -7.85 12.15 29.54 0.36 -7.49 16 5 S 0.18 2.62 22.72 -107.50 -2.44 0.17 16 6 C 0.35 5.15 8.54 -86.35 -0.74 4.41 16 7 N -0.66 -8.91 5.22 -55.03 -0.29 -9.19 16 8 C 0.15 2.25 2.45 -67.89 -0.17 2.08 16 9 C -0.15 -2.34 5.66 -26.61 -0.15 -2.49 16 10 C 0.15 2.84 6.52 -3.71 -0.02 2.82 16 11 N -0.59 -13.70 2.99 -172.32 -0.52 -14.21 16 12 C -0.26 -6.65 9.58 -15.06 -0.14 -6.79 16 13 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 14 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 15 N -0.90 -24.90 11.19 55.49 0.62 -24.28 16 16 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.17 3.76 5.30 -3.71 -0.02 3.74 16 21 C -0.15 -2.40 5.55 -26.61 -0.15 -2.55 16 22 N -0.60 -8.90 10.61 -14.58 -0.15 -9.05 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.41 5.05 8.73 -40.82 -0.36 4.69 16 29 H 0.08 1.26 7.44 -51.93 -0.39 0.88 16 30 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 2.34 6.06 -51.93 -0.31 2.02 16 37 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -28.64 323.40 -10.62 -39.26 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.67 Total: 1.13 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.37 Total: 3.05 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 0.02 Total: -64.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.44 Total: 0.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.64 -10.62 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087639878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.716 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds