Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00097 * 2 1 4 4 O 1.21593 * 119.99710 * 184.76782 * 3 2 1 5 5 C 1.47585 * 120.00036 * 4.76496 * 3 2 1 6 6 C 1.40045 * 119.89569 * 22.24932 * 5 3 2 7 7 C 1.36296 * 120.10301 * 179.75885 * 6 5 3 8 8 C 1.40907 * 119.89479 * 0.53288 * 7 6 5 9 9 C 1.41091 * 120.10060 * 179.69864 * 8 7 6 10 10 H 1.08002 * 119.99726 * 209.11356 * 9 8 7 11 11 C 1.40232 * 120.00073 * 29.10804 * 9 8 7 12 12 N 1.30640 * 120.00257 * 10.31053 * 11 9 8 13 13 Si 1.86805 * 119.99813 * 190.30950 * 11 9 8 14 14 H 1.48498 * 109.47149 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.46897 * 120.00210 * 13 11 9 16 16 H 1.48500 * 109.46726 * 240.00261 * 13 11 9 17 17 C 1.40900 * 119.79458 * 359.71759 * 8 7 6 18 18 C 1.36302 * 119.89580 * 0.02562 * 17 8 7 19 19 C 1.39278 * 120.00008 * 180.02562 * 2 1 3 20 20 C 1.39079 * 119.69768 * 4.99720 * 19 2 1 21 21 C 1.38354 * 119.09921 * 180.02562 * 20 19 2 22 22 C 1.38849 * 118.49567 * 0.02562 * 21 20 19 23 23 C 1.38078 * 119.31707 * 0.27340 * 22 21 20 24 24 N 1.31931 * 120.84989 * 359.45198 * 23 22 21 25 25 H 1.08998 * 109.46941 * 264.39764 * 1 2 3 26 26 H 1.09000 * 109.46951 * 24.39097 * 1 2 3 27 27 H 1.08997 * 109.47406 * 144.39803 * 1 2 3 28 28 H 1.08001 * 119.94591 * 359.97438 * 6 5 3 29 29 H 1.08002 * 120.05524 * 180.25362 * 7 6 5 30 30 H 0.96998 * 120.00130 * 179.97438 * 12 11 9 31 31 H 1.07997 * 120.05063 * 179.97438 * 17 8 7 32 32 H 1.08002 * 119.94911 * 180.02562 * 18 17 8 33 33 H 1.07998 * 120.45148 * 0.02562 * 20 19 2 34 34 H 1.07999 * 120.74888 * 180.02562 * 21 20 19 35 35 H 1.07994 * 120.34229 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.57566 * 179.70186 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1689 -0.0875 5 6 1.4048 2.4431 0.1062 6 6 0.1192 2.4647 0.6612 7 6 -0.5606 3.6414 0.7658 8 6 0.0277 4.8357 0.3041 9 6 -0.6747 6.0552 0.4045 10 1 -0.4940 6.8429 -0.3120 11 6 -1.6074 6.2446 1.4344 12 7 -1.6833 5.3830 2.4135 13 14 -2.7413 7.7288 1.4064 14 1 -2.4567 8.5464 0.1998 15 1 -4.1538 7.2720 1.3736 16 1 -2.5141 8.5482 2.6238 17 6 1.3192 4.8082 -0.2583 18 6 1.9935 3.6275 -0.3540 19 6 2.1614 -1.2062 -0.0005 20 6 1.4636 -2.4046 -0.1063 21 6 2.1678 -3.5956 -0.1050 22 6 3.5512 -3.5470 0.0029 23 6 4.1784 -2.3216 0.1108 24 7 3.4811 -1.2017 0.1015 25 1 -0.3633 -0.1003 1.0227 26 1 -0.3633 0.9360 -0.4244 27 1 -0.3634 -0.8355 -0.5982 28 1 -0.3329 1.5480 1.0100 29 1 -1.5503 3.6577 1.1977 30 1 -2.3282 5.5141 3.1261 31 1 1.7739 5.7210 -0.6138 32 1 2.9838 3.6055 -0.7846 33 1 0.3867 -2.4056 -0.1883 34 1 1.6530 -4.5415 -0.1862 35 1 4.1304 -4.4585 0.0066 36 1 5.2538 -2.2793 0.1999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089422154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = 60.394247 kcal Electronic energy + Delta-G solvation = -20857.635245 eV Core-core repulsion = 17694.062751 eV Total energy + Delta-G solvation = -3163.572493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63377 -38.88602 -37.11718 -35.37808 -33.90151 -32.34438 -31.07713 -29.60270 -29.44557 -26.98814 -26.05991 -23.71980 -22.96801 -21.40417 -20.97534 -19.39358 -17.58874 -17.31599 -16.69433 -15.82455 -15.73864 -15.33848 -15.20354 -14.62711 -14.18022 -13.79610 -13.41185 -13.15112 -13.02730 -12.92006 -12.66759 -12.36711 -11.96487 -11.83919 -11.48213 -11.45144 -11.23299 -10.82577 -10.63600 -10.12246 -10.04762 -9.69198 -9.60885 -9.42347 -9.41150 -8.56275 -7.89715 -7.71479 -7.51658 -6.99563 -4.64691 1.24034 1.44617 2.22351 2.90131 2.94220 2.96414 2.99893 3.08345 3.68793 3.75023 4.13141 4.51290 4.61126 4.84340 5.07013 5.17726 5.21276 5.35729 5.44235 5.55712 5.63628 5.76644 5.93233 6.05040 6.10029 6.25186 6.26266 6.51768 6.74171 6.80973 6.92236 7.03941 7.12455 7.41065 7.46105 7.69195 7.82572 7.84462 8.04497 8.35302 8.37854 8.61262 8.71246 8.92844 9.91931 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041147 B = 0.003609 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.331655 B = 7755.987321 C = 8235.884601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.554 5.554 3 C 0.561 3.439 4 O -0.502 6.502 5 C -0.278 4.278 6 C -0.090 4.090 7 C -0.171 4.171 8 C 0.128 3.872 9 C -0.444 4.444 10 H 0.084 0.916 11 C 0.072 3.928 12 N -0.780 5.780 13 Si 0.916 3.084 14 H -0.258 1.258 15 H -0.270 1.270 16 H -0.272 1.272 17 C -0.232 4.232 18 C -0.024 4.024 19 C 0.375 3.625 20 C -0.223 4.223 21 C -0.049 4.049 22 C -0.224 4.224 23 C 0.132 3.868 24 N -0.479 5.479 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.285 0.715 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -12.279 -2.480 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.279 5.279 3 C 0.357 3.643 4 O -0.376 6.376 5 C -0.282 4.282 6 C -0.109 4.109 7 C -0.190 4.190 8 C 0.125 3.875 9 C -0.472 4.472 10 H 0.102 0.898 11 C -0.148 4.148 12 N -0.404 5.404 13 Si 0.740 3.260 14 H -0.182 1.182 15 H -0.195 1.195 16 H -0.197 1.197 17 C -0.252 4.252 18 C -0.044 4.044 19 C 0.145 3.855 20 C -0.246 4.246 21 C -0.075 4.075 22 C -0.246 4.246 23 C -0.026 4.026 24 N -0.194 5.194 25 H 0.086 0.914 26 H 0.132 0.868 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.148 -11.351 -2.234 11.570 hybrid contribution -1.037 -0.255 0.173 1.082 sum -0.889 -11.606 -2.061 11.821 Atomic orbital electron populations 1.22752 0.77995 1.05137 1.02163 1.45716 1.07492 1.03847 1.70812 1.18987 0.87192 0.82965 0.75188 1.90748 1.13627 1.86351 1.46852 1.18824 0.98278 0.91351 1.19793 1.21336 0.93398 0.98377 0.97764 1.21085 1.01007 0.91033 1.05905 1.17847 0.89762 0.93112 0.86761 1.19865 1.17062 1.00159 1.10150 0.89783 1.26076 0.96377 0.98119 0.94236 1.69712 1.29504 1.33947 1.07278 0.86120 0.79592 0.80719 0.79586 1.18174 1.19472 1.19689 1.20761 0.96158 0.96256 1.12020 1.20335 0.97243 0.91535 0.95239 1.18691 0.88812 0.85844 0.92168 1.21570 1.01278 0.91855 1.09931 1.21285 0.94094 0.97603 0.94518 1.21949 0.95384 0.99391 1.07856 1.22684 1.00056 0.86964 0.92940 1.67763 1.05870 1.30607 1.15120 0.91439 0.86772 0.91567 0.86804 0.85835 0.90373 0.88249 0.88237 0.84679 0.85018 0.85277 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 8.08 59.85 0.48 1.35 16 2 N -0.55 -10.24 3.08 -123.93 -0.38 -10.62 16 3 C 0.56 12.57 7.46 -12.45 -0.09 12.48 16 4 O -0.50 -12.64 14.83 5.28 0.08 -12.56 16 5 C -0.28 -6.34 5.58 -104.73 -0.58 -6.93 16 6 C -0.09 -1.95 7.47 -39.60 -0.30 -2.24 16 7 C -0.17 -4.07 8.60 -39.27 -0.34 -4.41 16 8 C 0.13 3.21 5.55 -106.80 -0.59 2.62 16 9 C -0.44 -10.90 9.05 -37.75 -0.34 -11.24 16 10 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 11 C 0.07 1.66 5.26 -17.31 -0.09 1.57 16 12 N -0.78 -18.57 10.82 55.56 0.60 -17.97 16 13 Si 0.92 17.18 29.57 -169.99 -5.03 12.15 16 14 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 15 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 17 C -0.23 -5.56 9.73 -39.27 -0.38 -5.94 16 18 C -0.02 -0.57 9.52 -39.60 -0.38 -0.95 16 19 C 0.38 6.60 7.31 -154.80 -1.13 5.47 16 20 C -0.22 -2.95 9.27 -39.23 -0.36 -3.31 16 21 C -0.05 -0.54 10.17 -39.31 -0.40 -0.94 16 22 C -0.22 -2.54 10.11 -39.41 -0.40 -2.94 16 23 C 0.13 1.90 11.17 -17.57 -0.20 1.70 16 24 N -0.48 -9.08 7.91 -12.38 -0.10 -9.18 16 25 H 0.07 0.86 7.18 -51.93 -0.37 0.49 16 26 H 0.11 1.74 4.95 -51.93 -0.26 1.49 16 27 H 0.07 0.72 6.28 -51.93 -0.33 0.39 16 28 H 0.11 2.08 4.14 -52.49 -0.22 1.86 16 29 H 0.12 2.97 6.21 -52.49 -0.33 2.65 16 30 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 31 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.10 2.26 7.80 -52.49 -0.41 1.85 16 33 H 0.14 1.43 6.15 -52.49 -0.32 1.11 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -30.59 302.98 -8.83 -39.42 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.47 Total: 7.91 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -5.10 Total: -13.72 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.12 Total: -37.77 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.59 -8.83 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089422154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.815 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds