Wall clock time and date at job start Tue Mar 31 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.50702 * 109.47413 * 314.30418 * 13 12 11 15 15 C 1.38213 * 119.97262 * 269.72714 * 14 13 12 16 16 C 1.38472 * 120.01942 * 179.72573 * 15 14 13 17 17 F 1.35101 * 120.00859 * 180.29850 * 16 15 14 18 18 C 1.38418 * 119.97831 * 0.54217 * 16 15 14 19 19 C 1.38419 * 119.94538 * 359.73423 * 18 16 15 20 20 F 1.35104 * 120.00634 * 180.02562 * 19 18 16 21 21 C 1.38207 * 119.97359 * 90.00092 * 14 13 12 22 22 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 23 23 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 24 24 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 26 26 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 27 27 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 28 28 H 1.08995 * 109.42457 * 173.94854 * 11 10 9 29 29 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 30 30 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 31 31 H 1.08002 * 119.98535 * 359.97438 * 15 14 13 32 32 H 1.07998 * 120.02723 * 179.74470 * 18 16 15 33 33 H 1.07996 * 119.98775 * 0.02562 * 21 14 13 34 34 H 1.09001 * 109.49186 * 303.14219 * 22 12 11 35 35 H 1.08999 * 109.49207 * 183.06673 * 22 12 11 36 36 H 1.09004 * 109.62440 * 350.90141 * 23 9 7 37 37 H 1.09004 * 109.62907 * 111.27775 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3366 -5.5388 -3.7920 15 6 -1.5119 -6.2186 -3.5333 16 6 -2.5946 -6.0794 -4.3852 17 9 -3.7453 -6.7393 -4.1288 18 6 -2.4960 -5.2679 -5.5022 19 6 -1.3165 -4.5921 -5.7633 20 9 -1.2190 -3.7994 -6.8530 21 6 -0.2369 -4.7284 -4.9071 22 6 2.0102 -4.6146 -1.0325 23 6 1.8303 -3.6617 0.1539 24 1 -0.4851 0.8399 0.0004 25 1 -0.6867 -2.6167 -0.7035 26 1 0.0888 -1.3354 -1.6717 27 1 1.2942 -3.0054 -3.0036 28 1 -0.4378 -3.4179 -3.0099 29 1 1.7652 -5.5694 -3.4236 30 1 0.8161 -6.6739 -2.4001 31 1 -1.5870 -6.8554 -2.6642 32 1 -3.3386 -5.1620 -6.1694 33 1 0.6836 -4.2015 -5.1108 34 1 2.8259 -4.2606 -1.6630 35 1 2.2420 -5.6141 -0.6644 36 1 2.7815 -3.5379 0.6717 37 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:42 Heat of formation + Delta-G solvation = -29.431612 kcal Electronic energy + Delta-G solvation = -22140.911068 eV Core-core repulsion = 18555.046998 eV Total energy + Delta-G solvation = -3585.864070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.08744 -49.06408 -39.59859 -37.64739 -34.59496 -32.12591 -30.61735 -30.48551 -29.85582 -27.37573 -24.92487 -23.15659 -22.70336 -22.51481 -21.24928 -19.12491 -17.79507 -17.25927 -16.77817 -16.49706 -16.10086 -15.75611 -15.38220 -15.26006 -14.64936 -14.51085 -14.31861 -14.10512 -13.49437 -13.27218 -13.12169 -12.82373 -12.65657 -12.05400 -12.02529 -11.61439 -11.47388 -11.31067 -11.06650 -10.76494 -10.49428 -10.33525 -10.08177 -9.78802 -9.64132 -9.04608 -8.81338 -8.51544 -7.88382 -6.68616 -5.78815 -3.20184 0.84686 0.88842 3.20976 3.37336 3.44419 3.45822 3.73119 4.24429 4.36290 4.46778 4.51797 4.70894 4.81368 5.04756 5.31426 5.39321 5.42025 5.44391 5.69048 5.72527 5.83237 5.85490 5.89443 5.92486 6.09859 6.18675 6.25211 6.31796 6.50430 6.65982 6.66518 6.90237 7.21417 7.48740 7.60996 7.67468 7.80271 8.42458 9.20214 9.83688 10.41993 11.29917 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020217 B = 0.004537 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.610080 B = 6169.610533 C = 6698.206307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.179 3.821 11 C 0.029 3.971 12 N -0.526 5.526 13 C 0.088 3.912 14 C -0.014 4.014 15 C -0.144 4.144 16 C 0.129 3.871 17 F -0.133 7.133 18 C -0.197 4.197 19 C 0.129 3.871 20 F -0.133 7.133 21 C -0.155 4.155 22 C 0.045 3.955 23 C 0.148 3.852 24 H 0.254 0.746 25 H 0.026 0.974 26 H 0.088 0.912 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -13.307 -10.076 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.100 4.100 12 N -0.251 5.251 13 C -0.040 4.040 14 C -0.015 4.015 15 C -0.163 4.163 16 C 0.109 3.891 17 F -0.111 7.111 18 C -0.217 4.217 19 C 0.110 3.890 20 F -0.111 7.111 21 C -0.175 4.175 22 C -0.085 4.085 23 C 0.022 3.978 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.106 0.894 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.223 -13.259 -9.750 16.607 hybrid contribution 0.759 1.181 -0.775 1.604 sum -1.464 -12.078 -10.524 16.087 Atomic orbital electron populations 1.70028 1.05220 1.25500 1.53980 1.25020 0.95286 0.98363 1.00996 0.86282 0.79155 0.83805 0.77584 1.21522 1.21736 1.20406 1.19210 0.92701 0.84872 1.41476 0.91585 1.44157 1.34430 1.01195 1.52089 1.20956 0.88945 0.96626 0.88200 1.23142 0.98809 0.89120 0.98909 1.62193 1.34903 1.05952 1.22049 1.21184 0.93213 0.97888 0.91699 1.19472 0.95251 0.93277 0.93463 1.21083 0.91802 1.03008 1.00407 1.17243 0.82602 0.94166 0.95077 1.91525 1.47181 1.78650 1.93790 1.20966 0.99118 1.01533 1.00053 1.17198 0.94277 0.92346 0.85202 1.91532 1.96582 1.71446 1.51534 1.21181 0.99310 1.01651 0.95356 1.22658 0.89281 0.99618 0.96904 1.20970 0.97894 0.86503 0.92478 0.93594 0.95550 0.89353 0.95617 0.91728 0.93812 0.89660 0.83740 0.83666 0.84176 0.95197 0.91809 0.92522 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 11.16 55.49 0.62 -25.69 16 2 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.94 9.63 -15.06 -0.15 -7.08 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -14.97 3.03 -171.74 -0.52 -15.49 16 10 C 0.18 4.32 5.45 -3.36 -0.02 4.30 16 11 C 0.03 0.56 4.79 -3.46 -0.02 0.54 16 12 N -0.53 -8.84 4.77 -235.46 -1.12 -9.97 16 13 C 0.09 1.13 5.42 -4.98 -0.03 1.10 16 14 C -0.01 -0.17 4.12 -104.64 -0.43 -0.61 16 15 C -0.14 -1.72 9.68 -39.50 -0.38 -2.10 16 16 C 0.13 1.55 7.30 -39.43 -0.29 1.26 16 17 F -0.13 -1.63 17.27 2.25 0.04 -1.59 16 18 C -0.20 -2.28 10.01 -39.45 -0.39 -2.68 16 19 C 0.13 1.61 7.30 -39.43 -0.29 1.32 16 20 F -0.13 -1.71 17.27 2.25 0.04 -1.68 16 21 C -0.16 -1.95 7.74 -39.51 -0.31 -2.26 16 22 C 0.04 0.76 5.58 -3.70 -0.02 0.74 16 23 C 0.15 3.08 6.69 -3.61 -0.02 3.06 16 24 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 2.38 6.11 -51.93 -0.32 2.06 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.17 5.54 -51.93 -0.29 0.88 16 29 H 0.04 0.53 8.02 -51.93 -0.42 0.12 16 30 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.06 1.13 7.95 -51.93 -0.41 0.71 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -29.43 309.80 -8.52 -37.95 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.78 Total: -2.41 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.43 Total: -2.44 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -1.02 Total: -51.15 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.43 -8.52 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.522 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds