Wall clock time and date at job start Tue Mar 31 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46969 * 2 1 4 4 C 1.46902 * 110.99787 * 199.71499 * 3 2 1 5 5 C 1.50697 * 109.47196 * 66.03917 * 4 3 2 6 6 H 1.07997 * 119.99994 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99969 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00084 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99750 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46984 * 89.99754 * 9 7 5 11 11 H 1.48496 * 109.46722 * 209.99706 * 9 7 5 12 12 H 1.48498 * 109.47149 * 329.99811 * 9 7 5 13 13 C 1.46897 * 111.00216 * 75.75492 * 3 2 1 14 14 C 1.50702 * 109.47034 * 199.76720 * 13 3 2 15 15 C 1.38268 * 119.98707 * 264.43888 * 14 13 3 16 16 C 1.38224 * 120.05305 * 179.97438 * 15 14 13 17 17 C 1.38214 * 120.02556 * 359.78967 * 16 15 14 18 18 N 1.47995 * 120.01803 * 180.25208 * 17 16 15 19 19 O 1.21803 * 119.99642 * 0.21020 * 18 17 16 20 20 O 1.21802 * 120.00524 * 180.21208 * 18 17 16 21 21 C 1.38446 * 119.97149 * 0.46398 * 17 16 15 22 22 F 1.35098 * 120.02368 * 179.79691 * 21 17 16 23 23 C 1.38176 * 119.98823 * 84.41504 * 14 13 3 24 24 H 1.09004 * 109.47105 * 174.86460 * 1 2 3 25 25 H 1.08994 * 109.47063 * 294.86087 * 1 2 3 26 26 H 1.09002 * 109.47205 * 54.86223 * 1 2 3 27 27 H 1.08992 * 109.46875 * 239.99537 * 2 1 3 28 28 H 1.08999 * 109.46612 * 119.99737 * 2 1 3 29 29 H 1.08999 * 109.47125 * 186.04287 * 4 3 2 30 30 H 1.09006 * 109.46691 * 306.04434 * 4 3 2 31 31 H 0.96999 * 119.99469 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47063 * 79.76886 * 13 3 2 33 33 H 1.08997 * 109.47522 * 319.76917 * 13 3 2 34 34 H 1.08010 * 119.97519 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.98884 * 180.02562 * 16 15 14 36 36 H 1.07994 * 120.01034 * 0.04675 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4510 -0.4627 5 6 3.4797 1.0468 -1.9128 6 1 2.5780 0.7691 -2.4384 7 6 4.6922 1.0325 -2.5690 8 7 4.7509 0.6802 -3.8347 9 14 6.2518 1.5135 -1.6601 10 1 6.8549 0.3069 -1.0391 11 1 7.2168 2.1131 -2.6162 12 1 5.9231 2.5028 -0.6024 13 6 1.8770 1.9939 1.3292 14 6 1.9163 3.4949 1.2010 15 6 3.1054 4.1740 1.3931 16 6 3.1431 5.5507 1.2753 17 6 1.9929 6.2497 0.9610 18 7 2.0347 7.7232 0.8295 19 8 3.0838 8.3198 0.9944 20 8 1.0202 8.3394 0.5564 21 6 0.8007 5.5713 0.7737 22 9 -0.3250 6.2539 0.4705 23 6 0.7643 4.1920 0.8911 24 1 -0.3633 -1.0236 -0.0920 25 1 -0.3633 0.4320 0.9324 26 1 -0.3634 0.5915 -0.8404 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7842 2.4696 -0.3517 30 1 4.0252 0.7736 0.1321 31 1 5.6039 0.6706 -4.2963 32 1 2.6939 1.6624 1.9702 33 1 0.9259 1.6914 1.7673 34 1 4.0054 3.6283 1.6353 35 1 4.0725 6.0800 1.4251 36 1 -0.1643 3.6614 0.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094773918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:52 Heat of formation + Delta-G solvation = -17.291183 kcal Electronic energy + Delta-G solvation = -22069.908248 eV Core-core repulsion = 18472.197837 eV Total energy + Delta-G solvation = -3597.710411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.32542 -42.10247 -39.71797 -37.16178 -36.52144 -33.00125 -32.52653 -31.17776 -30.28914 -28.60117 -26.47539 -24.38812 -23.44984 -22.32105 -21.92365 -20.07719 -19.44556 -18.71086 -17.61797 -17.46314 -16.87012 -16.64659 -15.89463 -15.45745 -14.94892 -14.73843 -14.55332 -14.12689 -13.85667 -13.42467 -12.87398 -12.70780 -12.53705 -12.30253 -12.13416 -11.73244 -11.56991 -11.39455 -11.34081 -11.12377 -11.06394 -10.88572 -10.61146 -10.34081 -10.00289 -9.57436 -9.42882 -9.22610 -8.72277 -7.74187 -6.19152 -4.17867 -0.25612 0.71652 1.25111 1.32601 3.01693 3.15128 3.20879 3.25146 3.54071 4.11951 4.26883 4.29040 4.48880 4.72243 4.80468 5.08024 5.11880 5.15967 5.35670 5.46442 5.52275 5.59777 5.62886 5.73852 5.86534 6.08536 6.09088 6.12441 6.41635 6.45043 6.48090 6.68740 6.74639 7.37999 7.62543 7.63051 7.75983 8.46726 8.88926 9.41133 10.93732 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.005626 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.299104 B = 4975.347815 C = 6092.145974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.521 5.521 4 C 0.157 3.843 5 C -0.514 4.514 6 H 0.082 0.918 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.075 3.925 14 C 0.025 3.975 15 C -0.120 4.120 16 C -0.029 4.029 17 C -0.094 4.094 18 N 0.036 4.964 19 O -0.164 6.164 20 O -0.156 6.156 21 C 0.170 3.830 22 F -0.106 7.106 23 C -0.135 4.135 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.023 0.977 29 H 0.030 0.970 30 H -0.013 1.013 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 4.142 13.475 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 N -0.246 5.246 4 C 0.032 3.968 5 C -0.552 4.552 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.534 5.534 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.053 4.053 14 C 0.023 3.977 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.179 4.179 18 N 0.554 4.446 19 O -0.378 6.378 20 O -0.372 6.372 21 C 0.149 3.851 22 F -0.084 7.084 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.212 3.696 13.028 14.899 hybrid contribution 1.323 0.334 0.689 1.528 sum -4.889 4.030 13.717 15.110 Atomic orbital electron populations 1.21810 0.96124 1.00961 1.01413 1.22060 0.94643 0.88848 1.01750 1.62021 1.24510 1.18154 1.19892 1.20311 0.83240 0.96285 0.97009 1.20963 0.95502 1.45502 0.93244 0.89990 1.24898 0.98722 0.94814 0.94744 1.69877 1.25979 1.47931 1.09571 0.86907 0.83861 0.79178 0.80038 1.20224 1.20984 1.19279 1.21255 1.02300 0.88393 0.93368 1.20234 0.91516 0.97239 0.88679 1.21261 0.99068 0.92400 1.01187 1.20934 0.96624 0.94456 0.92740 1.21184 0.97027 0.80330 1.19316 1.43347 1.00465 1.02994 0.97794 1.94524 1.19807 1.69345 1.54161 1.94587 1.24186 1.68067 1.50365 1.17330 0.80762 0.90248 0.96772 1.91647 1.48081 1.79411 1.89285 1.21101 1.01578 0.89961 1.02864 0.92898 0.93895 0.91822 0.88551 0.95857 0.95189 0.99536 0.92480 0.93231 0.89446 0.83151 0.82235 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.96 37.16 0.37 -1.52 16 2 C 0.05 0.88 5.51 -3.82 -0.02 0.85 16 3 N -0.52 -9.09 4.34 -237.52 -1.03 -10.12 16 4 C 0.16 3.35 3.61 -4.98 -0.02 3.33 16 5 C -0.51 -13.51 8.79 -34.44 -0.30 -13.81 16 6 H 0.08 2.37 7.56 -52.49 -0.40 1.98 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -26.32 13.96 55.43 0.77 -25.55 16 9 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 13 C 0.07 0.98 4.95 -4.98 -0.02 0.95 16 14 C 0.02 0.32 5.03 -104.63 -0.53 -0.21 16 15 C -0.12 -1.49 8.40 -39.58 -0.33 -1.83 16 16 C -0.03 -0.36 9.55 -39.60 -0.38 -0.74 16 17 C -0.09 -1.35 6.86 -79.89 -0.55 -1.90 16 18 N 0.04 0.57 4.45 33.99 0.15 0.73 16 19 O -0.16 -2.64 18.45 -29.46 -0.54 -3.18 16 20 O -0.16 -2.65 17.42 -29.46 -0.51 -3.17 16 21 C 0.17 2.37 7.25 -39.42 -0.29 2.08 16 22 F -0.11 -1.55 15.48 2.25 0.03 -1.51 16 23 C -0.14 -1.69 9.70 -39.52 -0.38 -2.07 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.47 6.89 -51.93 -0.36 0.11 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.84 6.58 -51.93 -0.34 1.50 16 28 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 29 H 0.03 0.64 5.39 -51.93 -0.28 0.36 16 30 H -0.01 -0.28 7.55 -51.93 -0.39 -0.67 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 33 H 0.09 0.94 6.54 -51.93 -0.34 0.60 16 34 H 0.15 1.68 7.99 -52.48 -0.42 1.26 16 35 H 0.16 1.72 7.61 -52.49 -0.40 1.32 16 36 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -29.80 312.07 -7.83 -37.63 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.19 Total: -2.00 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.55 Total: -13.03 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.11 Total: -34.95 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -1.06 Total: -6.35 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.51 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.80 -7.83 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094773918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.341 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds