Wall clock time and date at job start Tue Mar 31 2020 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47496 * 2 1 4 4 C 1.50699 * 109.47274 * 120.00337 * 2 1 3 5 5 H 1.07997 * 119.99799 * 92.57199 * 4 2 1 6 6 C 1.37869 * 120.00103 * 272.57392 * 4 2 1 7 7 N 1.31513 * 120.00359 * 174.17613 * 6 4 2 8 8 Si 1.86806 * 119.99891 * 354.17648 * 6 4 2 9 9 H 1.48505 * 109.47069 * 274.23013 * 8 6 4 10 10 H 1.48499 * 109.47046 * 34.23250 * 8 6 4 11 11 H 1.48500 * 109.47170 * 154.23311 * 8 6 4 12 12 N 1.46899 * 109.46919 * 240.00258 * 2 1 3 13 13 C 1.46898 * 111.00091 * 183.95517 * 12 2 1 14 14 C 1.46907 * 111.00061 * 59.99802 * 12 2 1 15 15 C 1.50695 * 109.47223 * 190.00161 * 14 12 2 16 16 C 1.38263 * 119.99074 * 89.99994 * 15 14 12 17 17 C 1.38222 * 120.05780 * 179.97438 * 16 15 14 18 18 C 1.38220 * 120.02100 * 0.02562 * 17 16 15 19 19 N 1.48008 * 120.01310 * 179.97438 * 18 17 16 20 20 O 1.21800 * 119.99697 * 359.97438 * 19 18 17 21 21 O 1.21799 * 120.00179 * 180.02562 * 19 18 17 22 22 C 1.38444 * 119.97680 * 0.02562 * 18 17 16 23 23 F 1.35093 * 120.02507 * 179.97438 * 22 18 17 24 24 C 1.38180 * 119.98807 * 269.72567 * 15 14 12 25 25 H 1.08999 * 109.47291 * 52.84383 * 1 2 3 26 26 H 1.08992 * 109.47477 * 172.85087 * 1 2 3 27 27 H 1.09005 * 109.46890 * 292.84961 * 1 2 3 28 28 H 0.96998 * 120.00218 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47033 * 60.00191 * 13 12 2 30 30 H 1.09004 * 109.47002 * 180.02562 * 13 12 2 31 31 H 1.08995 * 109.47111 * 299.99483 * 13 12 2 32 32 H 1.08992 * 109.47095 * 310.00324 * 14 12 2 33 33 H 1.09006 * 109.46864 * 70.00127 * 14 12 2 34 34 H 1.08003 * 119.97090 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.99279 * 180.02562 * 17 16 15 36 36 H 1.08006 * 120.00951 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.2519 -1.7672 1.1919 6 6 2.2116 -0.0115 2.4052 7 7 2.5394 -0.6503 3.5070 8 14 1.9889 1.8431 2.4318 9 1 3.2596 2.5000 2.0326 10 1 0.9138 2.2262 1.4819 11 1 1.6166 2.2773 3.8022 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5485 -0.0263 -2.4211 15 6 1.8577 -0.8910 -3.6160 16 6 0.9368 -1.8272 -4.0484 17 6 1.2187 -2.6207 -5.1445 18 6 2.4223 -2.4793 -5.8093 19 7 2.7242 -3.3294 -6.9826 20 8 1.9122 -4.1541 -7.3622 21 8 3.7851 -3.2050 -7.5680 22 6 3.3457 -1.5429 -5.3766 23 9 4.5225 -1.4043 -6.0254 24 6 3.0592 -0.7440 -4.2825 25 1 -0.3634 0.6207 -0.8190 26 1 -0.3634 -1.0196 -0.1279 27 1 -0.3633 0.3991 0.9471 28 1 2.6658 -0.1584 4.3334 29 1 3.8029 -1.3533 -0.3068 30 1 3.8208 -1.3109 -2.0865 31 1 3.9186 0.2051 -1.1593 32 1 0.4722 0.1325 -2.3564 33 1 2.0518 0.9347 -2.5281 34 1 -0.0041 -1.9380 -3.5298 35 1 0.4984 -3.3514 -5.4816 36 1 3.7768 -0.0098 -3.9469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094773931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:42 Heat of formation + Delta-G solvation = -13.034541 kcal Electronic energy + Delta-G solvation = -21922.435355 eV Core-core repulsion = 18324.909526 eV Total energy + Delta-G solvation = -3597.525829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.46190 -42.22018 -39.86572 -37.26376 -36.63768 -33.43298 -32.12475 -31.27287 -30.12144 -28.26055 -25.96446 -24.79517 -23.59347 -23.43986 -21.72091 -19.63455 -19.51271 -18.83462 -17.73629 -17.47083 -17.12454 -16.68389 -16.04784 -15.43417 -15.09890 -14.76861 -14.59183 -14.18055 -13.71361 -13.19983 -12.80921 -12.77276 -12.58294 -12.37354 -11.91723 -11.68588 -11.67163 -11.25962 -11.25103 -11.23808 -11.11182 -10.74825 -10.61686 -10.49769 -9.96051 -9.68818 -9.38322 -9.24167 -8.73262 -7.67810 -6.23586 -4.23484 -0.38444 0.56971 1.12719 1.19907 2.89672 3.12983 3.22247 3.23935 3.39810 3.98445 4.20279 4.24864 4.44790 4.65110 4.68079 4.94538 5.09903 5.20622 5.22790 5.45451 5.50556 5.64237 5.81967 5.98884 5.99601 6.06451 6.20489 6.29782 6.35675 6.41963 6.65306 6.78008 7.06718 7.41108 7.50768 7.65807 7.80103 8.44941 8.85724 9.38334 10.89033 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.034567 B = 0.003769 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.831516 B = 7428.163618 C = 7645.974463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.182 3.818 3 H 0.002 0.998 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.893 5.893 8 Si 0.870 3.130 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.286 1.286 12 N -0.522 5.522 13 C 0.031 3.969 14 C 0.069 3.931 15 C 0.024 3.976 16 C -0.109 4.109 17 C -0.029 4.029 18 C -0.096 4.096 19 N 0.035 4.965 20 O -0.162 6.162 21 O -0.157 6.157 22 C 0.171 3.829 23 F -0.106 7.106 24 C -0.154 4.154 25 H 0.021 0.979 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 1.261 -15.564 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.076 3.924 3 H 0.020 0.980 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.697 3.303 9 H -0.203 1.203 10 H -0.189 1.189 11 H -0.212 1.212 12 N -0.247 5.247 13 C -0.117 4.117 14 C -0.059 4.059 15 C 0.022 3.978 16 C -0.128 4.128 17 C -0.048 4.048 18 C -0.181 4.181 19 N 0.553 4.447 20 O -0.377 6.377 21 O -0.372 6.372 22 C 0.150 3.850 23 F -0.084 7.084 24 C -0.174 4.174 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.918 1.224 -14.795 15.129 hybrid contribution 0.655 1.624 -0.224 1.765 sum -2.262 2.848 -15.018 15.452 Atomic orbital electron populations 1.22069 0.97773 1.00498 0.99197 1.19758 0.92274 0.92233 0.88163 0.98006 1.20828 1.44350 0.97708 0.91728 0.89985 1.24952 0.94519 0.97905 0.95459 1.69879 1.47338 1.35909 0.99862 0.87000 0.79053 0.86700 0.77576 1.20348 1.18880 1.21224 1.62243 1.10528 1.51585 1.00342 1.22334 0.87527 0.99634 1.02214 1.21386 1.02601 0.93548 0.88363 1.20365 0.91051 0.92948 0.93402 1.21220 1.01541 0.94784 0.95300 1.21010 0.93207 0.97667 0.92883 1.21210 1.00143 1.01491 0.95215 1.43362 1.00236 1.00013 1.01078 1.94525 1.44042 1.29608 1.69505 1.94598 1.12260 1.74171 1.56205 1.17308 0.81337 0.94371 0.92018 1.91654 1.43090 1.94244 1.79412 1.21267 0.99551 1.01742 0.94853 0.96007 0.92509 0.92879 0.92416 0.89223 0.93614 0.96566 0.88526 0.93679 0.82553 0.82116 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.43 37.16 0.31 -2.24 16 2 C 0.18 3.77 1.61 -68.87 -0.11 3.66 16 3 H 0.00 0.05 5.71 -51.93 -0.30 -0.25 16 4 C -0.51 -12.92 7.57 -34.44 -0.26 -13.18 16 5 H 0.08 2.33 7.82 -52.49 -0.41 1.92 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 8 Si 0.87 19.86 26.37 -169.99 -4.48 15.38 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.26 -5.68 6.39 56.52 0.36 -5.32 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.52 -9.13 4.61 -237.73 -1.10 -10.22 16 13 C 0.03 0.53 8.92 60.06 0.54 1.07 16 14 C 0.07 0.91 4.93 -4.97 -0.02 0.88 16 15 C 0.02 0.27 4.88 -104.64 -0.51 -0.24 16 16 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 17 C -0.03 -0.29 9.55 -39.59 -0.38 -0.67 16 18 C -0.10 -1.19 6.86 -79.88 -0.55 -1.74 16 19 N 0.03 0.50 4.45 33.99 0.15 0.65 16 20 O -0.16 -2.32 18.45 -29.46 -0.54 -2.86 16 21 O -0.16 -2.44 17.42 -29.46 -0.51 -2.95 16 22 C 0.17 2.10 7.25 -39.42 -0.29 1.82 16 23 F -0.11 -1.41 15.48 2.25 0.03 -1.38 16 24 C -0.15 -1.72 7.89 -39.51 -0.31 -2.03 16 25 H 0.02 0.33 6.59 -51.93 -0.34 -0.01 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.05 7.24 -51.93 -0.38 0.68 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.09 1.79 6.83 -51.93 -0.35 1.43 16 30 H 0.05 0.67 5.91 -51.93 -0.31 0.36 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 1.17 5.92 -51.93 -0.31 0.86 16 33 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 34 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.16 1.31 7.61 -52.49 -0.40 0.91 16 36 H 0.16 1.54 8.00 -52.48 -0.42 1.12 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -28.76 306.76 -7.19 -35.95 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.07 Total: -2.08 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -2.06 Total: -12.26 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.17 Total: -34.42 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -1.06 Total: -5.82 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.03 Total: -1.38 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.48 Total: 15.38 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.76 -7.19 -35.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094773931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.919 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds