Wall clock time and date at job start Tue Mar 31 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46914 * 2 1 4 4 C 1.50703 * 109.47192 * 240.00654 * 2 1 3 5 5 H 1.08000 * 120.00175 * 354.92584 * 4 2 1 6 6 C 1.37878 * 119.99733 * 174.93412 * 4 2 1 7 7 N 1.31515 * 119.99597 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00219 * 359.96817 * 6 4 2 9 9 H 1.48504 * 109.46676 * 84.87686 * 8 6 4 10 10 H 1.48492 * 109.47095 * 204.87606 * 8 6 4 11 11 H 1.48502 * 109.46896 * 324.87848 * 8 6 4 12 12 N 1.46900 * 109.47433 * 120.00183 * 2 1 3 13 13 C 1.46898 * 110.99882 * 58.95505 * 12 2 1 14 14 C 1.46908 * 110.99876 * 295.00455 * 12 2 1 15 15 C 1.50692 * 109.46866 * 189.99705 * 14 12 2 16 16 C 1.38269 * 119.98937 * 270.25185 * 15 14 12 17 17 C 1.38223 * 120.05227 * 180.25892 * 16 15 14 18 18 C 1.38221 * 120.02514 * 359.48794 * 17 16 15 19 19 N 1.48001 * 120.01485 * 180.23441 * 18 17 16 20 20 O 1.21807 * 119.99938 * 0.02562 * 19 18 17 21 21 O 1.21802 * 120.00112 * 180.02562 * 19 18 17 22 22 C 1.38444 * 119.97391 * 0.25864 * 18 17 16 23 23 F 1.35094 * 120.02439 * 180.02562 * 22 18 17 24 24 C 1.38174 * 119.98713 * 89.99994 * 15 14 12 25 25 H 1.09001 * 109.47419 * 295.11761 * 1 2 3 26 26 H 1.09000 * 109.47346 * 55.12379 * 1 2 3 27 27 H 1.09000 * 109.46731 * 175.11832 * 1 2 3 28 28 H 0.97005 * 120.00008 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47288 * 296.05148 * 13 12 2 30 30 H 1.09003 * 109.47384 * 56.04569 * 13 12 2 31 31 H 1.08999 * 109.47337 * 176.04727 * 13 12 2 32 32 H 1.08995 * 109.46900 * 69.99718 * 14 12 2 33 33 H 1.08997 * 109.46763 * 309.99571 * 14 12 2 34 34 H 1.07999 * 119.97125 * 0.02562 * 16 15 14 35 35 H 1.07994 * 119.98966 * 179.76621 * 17 16 15 36 36 H 1.08001 * 120.01233 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 1.3340 -1.1917 -1.8991 6 6 3.3835 -0.7456 -1.5028 7 7 3.8219 -1.3659 -2.5764 8 14 4.5914 0.0876 -0.3467 9 1 4.9328 -0.8379 0.7633 10 1 5.8254 0.4429 -1.0923 11 1 3.9759 1.3200 0.2078 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3678 -0.5572 3.6005 16 6 1.7867 -1.5889 4.3145 17 6 2.4428 -2.1332 5.4025 18 6 3.6856 -1.6539 5.7715 19 7 4.3902 -2.2404 6.9334 20 8 3.8752 -3.1461 7.5643 21 8 5.4852 -1.8175 7.2586 22 6 4.2708 -0.6245 5.0542 23 9 5.4857 -0.1556 5.4136 24 6 3.6101 -0.0764 3.9675 25 1 -0.3634 0.4362 0.9305 26 1 -0.3634 0.5876 -0.8431 27 1 -0.3633 -1.0240 -0.0875 28 1 4.7725 -1.3905 -2.7681 29 1 0.4420 -2.0732 1.3346 30 1 1.8168 -2.5950 0.3317 31 1 1.9618 -2.5869 2.1057 32 1 0.5722 -0.0347 2.5726 33 1 1.9297 1.0869 2.3125 34 1 0.8176 -1.9671 4.0241 35 1 1.9863 -2.9364 5.9618 36 1 4.0659 0.7264 3.4069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094773932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:44 Heat of formation + Delta-G solvation = -12.752936 kcal Electronic energy + Delta-G solvation = -22363.846306 eV Core-core repulsion = 18766.332688 eV Total energy + Delta-G solvation = -3597.513618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.39366 -42.18532 -39.84497 -37.42360 -36.60405 -33.33155 -32.08848 -31.23185 -29.77043 -27.91072 -25.82272 -25.69141 -23.73921 -23.19836 -21.64475 -19.57413 -19.34310 -18.79779 -17.70140 -17.40520 -16.94645 -16.61979 -15.99512 -15.47752 -15.11227 -14.67464 -14.49999 -14.06140 -13.58387 -13.45154 -12.87843 -12.79927 -12.53973 -12.28909 -11.79463 -11.65479 -11.59166 -11.28323 -11.20624 -11.20121 -11.18460 -10.80977 -10.58948 -10.14434 -9.80021 -9.76048 -9.34370 -9.20200 -8.69474 -7.57414 -6.18065 -4.25296 -0.34637 0.61746 1.16578 1.23711 2.92991 3.36357 3.43237 3.45692 3.49194 4.04783 4.22866 4.43799 4.46309 4.71420 4.74759 5.00504 5.15045 5.27289 5.36315 5.50119 5.54048 5.69096 5.88591 5.97371 6.02768 6.05080 6.09527 6.13520 6.30537 6.33824 6.58097 6.80210 7.00234 7.43824 7.54580 7.74134 7.92230 8.39511 8.82308 9.45331 10.91637 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.005226 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.680297 B = 5356.974144 C = 5968.963697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.513 4.513 5 H 0.073 0.927 6 C 0.084 3.916 7 N -0.894 5.894 8 Si 0.913 3.087 9 H -0.272 1.272 10 H -0.309 1.309 11 H -0.273 1.273 12 N -0.531 5.531 13 C 0.030 3.970 14 C 0.069 3.931 15 C 0.022 3.978 16 C -0.124 4.124 17 C -0.029 4.029 18 C -0.097 4.097 19 N 0.036 4.964 20 O -0.164 6.164 21 O -0.156 6.156 22 C 0.172 3.828 23 F -0.105 7.105 24 C -0.142 4.142 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.265 0.735 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 1.749 14.423 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.551 4.551 5 H 0.091 0.909 6 C -0.121 4.121 7 N -0.530 5.530 8 Si 0.743 3.257 9 H -0.197 1.197 10 H -0.237 1.237 11 H -0.198 1.198 12 N -0.257 5.257 13 C -0.118 4.118 14 C -0.059 4.059 15 C 0.021 3.979 16 C -0.144 4.144 17 C -0.048 4.048 18 C -0.182 4.182 19 N 0.554 4.446 20 O -0.378 6.378 21 O -0.372 6.372 22 C 0.151 3.849 23 F -0.083 7.083 24 C -0.162 4.162 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.178 0.822 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.514 1.984 13.729 14.588 hybrid contribution 0.349 0.241 0.907 1.002 sum -4.165 2.225 14.637 15.380 Atomic orbital electron populations 1.22292 0.99609 1.01055 0.99407 1.19941 0.90062 0.95466 0.87931 0.93495 1.20853 0.93119 1.36313 1.04831 0.90859 1.25035 0.98676 0.93929 0.94428 1.69936 1.15059 1.42028 1.25991 0.86251 0.78685 0.80192 0.80559 1.19734 1.23749 1.19828 1.62950 1.59664 1.02701 1.00371 1.22264 0.96313 0.90470 1.02704 1.21338 0.96850 0.98889 0.88810 1.20413 0.92265 0.91667 0.93544 1.21229 1.01835 0.96810 0.94483 1.20930 0.90298 0.97991 0.95612 1.21180 0.98292 1.03832 0.94905 1.43349 1.00636 0.99637 1.00992 1.94516 1.69327 1.21493 1.52483 1.94601 1.06205 1.64299 1.72108 1.17364 0.81707 0.91967 0.93824 1.91654 1.39588 1.86522 1.90548 1.21227 0.95806 1.03414 0.95777 0.95146 0.92819 0.93080 0.92508 0.96322 0.89323 0.93797 0.92857 0.89580 0.83005 0.82208 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.40 37.16 0.31 -2.51 16 2 C 0.17 3.46 1.70 -68.86 -0.12 3.34 16 3 H 0.05 0.99 6.80 -51.93 -0.35 0.64 16 4 C -0.51 -13.02 7.76 -34.44 -0.27 -13.28 16 5 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 8 Si 0.91 21.65 26.26 -169.99 -4.46 17.19 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.31 -7.57 7.11 56.52 0.40 -7.17 16 11 H -0.27 -6.07 6.52 56.52 0.37 -5.70 16 12 N -0.53 -9.61 2.78 -237.73 -0.66 -10.27 16 13 C 0.03 0.51 8.38 60.06 0.50 1.02 16 14 C 0.07 0.94 4.56 -4.98 -0.02 0.92 16 15 C 0.02 0.28 4.89 -104.64 -0.51 -0.23 16 16 C -0.12 -1.31 7.95 -39.58 -0.31 -1.62 16 17 C -0.03 -0.32 9.55 -39.59 -0.38 -0.70 16 18 C -0.10 -1.32 6.86 -79.89 -0.55 -1.87 16 19 N 0.04 0.55 4.45 33.99 0.15 0.70 16 20 O -0.16 -2.46 18.45 -29.46 -0.54 -3.00 16 21 O -0.16 -2.59 17.42 -29.46 -0.51 -3.10 16 22 C 0.17 2.42 7.25 -39.42 -0.29 2.14 16 23 F -0.11 -1.58 15.48 2.25 0.03 -1.55 16 24 C -0.14 -1.90 9.68 -39.51 -0.38 -2.28 16 25 H 0.03 0.43 6.52 -51.93 -0.34 0.09 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.88 6.75 -51.93 -0.35 0.53 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.02 0.28 6.62 -51.93 -0.34 -0.07 16 30 H 0.09 1.80 6.99 -51.93 -0.36 1.44 16 31 H 0.04 0.66 6.15 -51.93 -0.32 0.34 16 32 H 0.05 0.64 6.77 -51.93 -0.35 0.29 16 33 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 34 H 0.15 1.25 8.01 -52.49 -0.42 0.83 16 35 H 0.16 1.39 7.61 -52.49 -0.40 0.99 16 36 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 304.66 15.07 4.59 4.59 Total: -1.00 -29.13 304.66 -6.83 -35.95 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.09 Total: -2.39 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.11 Total: -12.90 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.26 Total: -34.79 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -1.06 Total: -6.10 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.03 Total: -1.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.46 Total: 17.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.13 -6.83 -35.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094773932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.200 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds