Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36941 * 119.99817 * 2 1 4 4 H 1.08000 * 119.99860 * 200.40670 * 3 2 1 5 5 C 1.38811 * 120.00235 * 20.40152 * 3 2 1 6 6 N 1.31622 * 119.99654 * 14.95473 * 5 3 2 7 7 Si 1.86795 * 119.99998 * 194.95508 * 5 3 2 8 8 H 1.48502 * 109.47172 * 85.00346 * 7 5 3 9 9 H 1.48502 * 109.47160 * 205.00002 * 7 5 3 10 10 H 1.48501 * 109.47353 * 325.00463 * 7 5 3 11 11 C 1.46497 * 120.00169 * 179.97438 * 2 1 3 12 12 N 1.46495 * 109.47481 * 270.00678 * 11 2 1 13 13 C 1.38917 * 124.84594 * 89.99647 * 12 11 2 14 14 C 1.38268 * 137.00476 * 0.02562 * 13 12 11 15 15 C 1.39436 * 119.98167 * 180.02562 * 14 13 12 16 16 C 1.36860 * 123.25559 * 359.97438 * 15 14 13 17 17 C 1.40461 * 118.50131 * 0.02562 * 16 15 14 18 18 C 1.40544 * 125.78074 * 180.02562 * 17 16 15 19 19 C 1.36925 * 118.94018 * 179.97438 * 18 17 16 20 20 C 1.39457 * 123.14159 * 0.04413 * 19 18 17 21 21 C 1.38363 * 119.71374 * 0.25429 * 20 19 18 22 22 C 1.39114 * 106.88812 * 180.02562 * 13 12 11 23 23 C 1.35931 * 124.83837 * 269.99984 * 12 11 2 24 24 O 1.21685 * 126.00564 * 359.97438 * 23 12 11 25 25 H 1.08998 * 109.47413 * 275.09533 * 1 2 3 26 26 H 1.09001 * 109.46803 * 35.09493 * 1 2 3 27 27 H 1.08998 * 109.46910 * 155.09212 * 1 2 3 28 28 H 0.97001 * 119.99467 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47173 * 150.00050 * 11 2 1 30 30 H 1.09008 * 109.46691 * 30.00235 * 11 2 1 31 31 H 1.07993 * 120.00837 * 359.97438 * 14 13 12 32 32 H 1.07993 * 118.37203 * 180.02562 * 15 14 13 33 33 H 1.08001 * 120.75017 * 180.02562 * 16 15 14 34 34 H 1.07998 * 120.52620 * 359.93862 * 18 17 16 35 35 H 1.08003 * 118.42950 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.14089 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1789 1.2153 -0.3261 5 6 1.5210 2.3504 0.4191 6 7 0.3879 2.2832 1.0854 7 14 2.2829 4.0126 0.0373 8 1 1.8686 4.4469 -1.3210 9 1 1.8230 5.0094 1.0374 10 1 3.7629 3.9030 0.0920 11 6 2.1975 -1.2687 0.0006 12 7 2.4416 -1.6911 1.3819 13 6 1.5865 -2.4900 2.1305 14 6 0.3687 -3.1181 1.9457 15 6 -0.1945 -3.8643 2.9802 16 6 0.3996 -4.0194 4.2034 17 6 1.6379 -3.3967 4.4308 18 6 2.3800 -3.4543 5.6229 19 6 3.5763 -2.7917 5.6914 20 6 4.1016 -2.0549 4.6302 21 6 3.3990 -1.9682 3.4414 22 6 2.1782 -2.6567 3.3784 23 6 3.5372 -1.3572 2.1140 24 8 4.4663 -0.6676 1.7372 25 1 -0.3634 0.0913 1.0236 26 1 -0.3633 0.8409 -0.5909 27 1 -0.3633 -0.9321 -0.4328 28 1 -0.0513 3.0969 1.3785 29 1 3.1499 -1.1386 -0.5133 30 1 1.6084 -2.0286 -0.5130 31 1 -0.1465 -3.0302 1.0006 32 1 -1.1464 -4.3443 2.8075 33 1 -0.0731 -4.6073 4.9763 34 1 2.0122 -4.0118 6.4716 35 1 4.1400 -2.8419 6.6113 36 1 5.0505 -1.5505 4.7375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = 71.181562 kcal Electronic energy + Delta-G solvation = -21892.338523 eV Core-core repulsion = 18729.233802 eV Total energy + Delta-G solvation = -3163.104720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68451 -38.31628 -36.63290 -35.55355 -34.95062 -31.84955 -30.60105 -30.00386 -28.56877 -26.26666 -25.82394 -24.11866 -22.69042 -21.80812 -21.01374 -20.14678 -17.25115 -17.06960 -16.55306 -16.39183 -15.87323 -15.42552 -15.02977 -14.52993 -13.95599 -13.77956 -13.58758 -13.34278 -13.06063 -12.86189 -12.68788 -12.18599 -12.02103 -11.49145 -11.45528 -11.28391 -10.96537 -10.79448 -10.74892 -10.57453 -10.27774 -10.08303 -9.94770 -9.53859 -8.75657 -8.65966 -8.51366 -7.20412 -7.07692 -5.85629 -3.32266 0.29166 1.21379 2.19226 2.75727 3.24528 3.41968 3.42375 3.46144 3.85111 4.27523 4.44936 4.46981 4.79497 4.90042 5.03610 5.22141 5.35951 5.42346 5.43355 5.45392 5.53562 5.68515 5.75649 5.90023 6.02125 6.18055 6.24478 6.34635 6.42393 6.48968 6.56632 6.67195 6.85499 7.03565 7.18228 7.33055 7.58896 7.65168 7.77955 8.22186 8.57536 9.07929 9.66662 10.11517 11.18569 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.006196 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.529050 B = 4517.819006 C = 5129.794113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.155 3.845 2 N -0.575 5.575 3 C -0.265 4.265 4 H 0.078 0.922 5 C 0.009 3.991 6 N -0.900 5.900 7 Si 0.910 3.090 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.276 1.276 11 C 0.344 3.656 12 N -0.548 5.548 13 C 0.185 3.815 14 C -0.138 4.138 15 C -0.078 4.078 16 C -0.144 4.144 17 C -0.024 4.024 18 C -0.079 4.079 19 C -0.129 4.129 20 C -0.035 4.035 21 C -0.141 4.141 22 C -0.120 4.120 23 C 0.570 3.430 24 O -0.488 6.488 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.002 0.998 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -14.314 6.686 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.294 5.294 3 C -0.394 4.394 4 H 0.096 0.904 5 C -0.191 4.191 6 N -0.543 5.543 7 Si 0.739 3.261 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.201 1.201 11 C 0.137 3.863 12 N -0.275 5.275 13 C 0.085 3.915 14 C -0.160 4.160 15 C -0.096 4.096 16 C -0.163 4.163 17 C -0.025 4.025 18 C -0.097 4.097 19 C -0.147 4.147 20 C -0.054 4.054 21 C -0.145 4.145 22 C -0.123 4.123 23 C 0.359 3.641 24 O -0.362 6.362 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.338 -13.609 6.270 14.987 hybrid contribution 0.139 1.094 0.101 1.107 sum 0.477 -12.515 6.371 14.051 Atomic orbital electron populations 1.20957 0.81899 0.96011 1.00058 1.44903 1.02723 1.01319 1.80480 1.19352 0.97506 0.84236 1.38298 0.90387 1.25083 0.97583 0.98916 0.97471 1.70100 1.18618 1.27320 1.38294 0.86180 0.79100 0.83199 0.77606 1.21116 1.21614 1.20138 1.21673 0.97194 0.87596 0.79868 1.48799 1.17484 1.45292 1.15927 1.17866 0.92450 0.91280 0.89939 1.20266 0.93814 1.01340 1.00578 1.20630 0.99243 0.97329 0.92424 1.20829 0.95047 1.02770 0.97678 1.17244 0.95040 0.97224 0.92966 1.21230 0.94062 0.97989 0.96399 1.20918 0.96717 0.98520 0.98570 1.20814 0.98775 0.95457 0.90329 1.20313 0.96765 1.01319 0.96075 1.18210 0.97056 1.01549 0.95500 1.18341 0.82052 0.79409 0.84256 1.90779 1.33534 1.35549 1.76335 0.94665 0.93055 0.97903 0.93470 0.89983 0.91083 0.85660 0.85932 0.85493 0.85010 0.85580 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 9.02 59.85 0.54 4.26 16 2 N -0.57 -14.47 3.17 -184.86 -0.59 -15.06 16 3 C -0.26 -7.46 9.68 -15.06 -0.15 -7.61 16 4 H 0.08 2.24 7.86 -52.49 -0.41 1.83 16 5 C 0.01 0.26 5.06 -17.43 -0.09 0.17 16 6 N -0.90 -26.47 10.67 55.49 0.59 -25.87 16 7 Si 0.91 22.59 29.58 -169.99 -5.03 17.56 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 C 0.34 7.29 6.51 -63.76 -0.42 6.88 16 12 N -0.55 -11.70 3.02 -118.42 -0.36 -12.06 16 13 C 0.19 3.51 6.95 -84.31 -0.59 2.93 16 14 C -0.14 -2.17 10.09 -39.12 -0.39 -2.57 16 15 C -0.08 -1.01 9.84 -39.63 -0.39 -1.40 16 16 C -0.14 -1.83 10.05 -39.24 -0.39 -2.23 16 17 C -0.02 -0.36 5.72 -107.71 -0.62 -0.98 16 18 C -0.08 -0.96 10.03 -39.19 -0.39 -1.35 16 19 C -0.13 -1.59 9.85 -39.60 -0.39 -1.98 16 20 C -0.03 -0.54 10.12 -39.08 -0.40 -0.93 16 21 C -0.14 -2.71 6.65 -105.62 -0.70 -3.42 16 22 C -0.12 -2.19 5.63 -108.31 -0.61 -2.80 16 23 C 0.57 12.89 8.08 -12.28 -0.10 12.80 16 24 O -0.49 -12.34 17.79 5.20 0.09 -12.25 16 25 H 0.03 0.93 7.40 -51.93 -0.38 0.55 16 26 H 0.05 1.32 7.21 -51.93 -0.37 0.94 16 27 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.08 1.75 7.91 -51.93 -0.41 1.34 16 30 H 0.07 1.26 7.85 -51.92 -0.41 0.85 16 31 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -33.47 311.54 -9.74 -43.21 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.07 Total: -2.00 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -5.08 Total: 1.77 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.35 Total: -52.98 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.47 -9.74 -43.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.392 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds