Wall clock time and date at job start Tue Mar 31 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46543 * 2 1 4 4 C 1.50697 * 109.47045 * 119.99828 * 2 1 3 5 5 O 1.21276 * 119.99840 * 120.00176 * 4 2 1 6 6 N 1.34777 * 120.00086 * 300.00073 * 4 2 1 7 7 C 1.46502 * 120.00134 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47008 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.46959 * 179.97438 * 8 7 6 10 10 C 1.33392 * 125.20161 * 89.99784 * 9 8 7 11 11 C 1.38427 * 114.91928 * 179.97438 * 10 9 8 12 12 C 1.33392 * 114.92139 * 0.02562 * 11 10 9 13 13 S 1.75879 * 109.59237 * 359.75728 * 12 11 10 14 14 N 1.46491 * 109.47001 * 240.00105 * 2 1 3 15 15 C 1.46507 * 120.00095 * 299.99482 * 14 2 1 16 16 C 1.36938 * 120.00307 * 120.00031 * 14 2 1 17 17 H 1.08007 * 119.99869 * 20.42519 * 16 14 2 18 18 C 1.38815 * 120.00488 * 200.42523 * 16 14 2 19 19 N 1.31625 * 119.99461 * 15.03173 * 18 16 14 20 20 Si 1.86798 * 120.00281 * 195.03134 * 18 16 14 21 21 H 1.48495 * 109.46990 * 85.00175 * 20 18 16 22 22 H 1.48500 * 109.46901 * 205.00093 * 20 18 16 23 23 H 1.48502 * 109.46914 * 324.99914 * 20 18 16 24 24 H 1.09000 * 109.46543 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47009 * 300.00218 * 1 2 3 26 26 H 1.09002 * 109.46941 * 60.00531 * 1 2 3 27 27 H 0.97005 * 120.00222 * 359.97438 * 6 4 2 28 28 H 1.08996 * 109.47151 * 60.00087 * 7 6 4 29 29 H 1.08997 * 109.46525 * 299.99747 * 7 6 4 30 30 H 1.08992 * 109.47516 * 299.99765 * 8 7 6 31 31 H 1.09005 * 109.46940 * 60.00160 * 8 7 6 32 32 H 1.07991 * 122.54087 * 359.95886 * 10 9 8 33 33 H 1.07996 * 122.53580 * 180.02562 * 11 10 9 34 34 H 1.08003 * 125.20285 * 180.02562 * 12 11 10 35 35 H 1.09002 * 109.46795 * 95.21285 * 15 14 2 36 36 H 1.08999 * 109.47375 * 215.21559 * 15 14 2 37 37 H 1.08995 * 109.46781 * 335.21582 * 15 14 2 38 38 H 0.96995 * 119.99751 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1956 -0.9401 3.6508 8 6 1.6859 -0.2185 4.9000 9 6 2.1882 -0.9289 6.1304 10 6 3.3347 -0.6624 6.7581 11 6 3.5866 -1.4467 7.8706 12 6 2.6449 -2.3504 8.1460 13 16 1.3493 -2.2318 6.9625 14 7 2.0184 -0.6905 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.8056 -0.0251 -2.0975 17 1 3.3362 0.8662 -1.7965 18 6 2.9218 -0.4960 -3.3982 19 7 2.0675 -1.3875 -3.8540 20 14 4.2904 0.1356 -4.5015 21 1 5.5258 -0.6515 -4.2576 22 1 3.8855 -0.0065 -5.9232 23 1 4.5479 1.5669 -4.2008 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.1494 0.5390 2.5436 28 1 3.2855 -0.9397 3.6507 29 1 1.8326 -1.9679 3.6509 30 1 2.0492 0.8091 4.8996 31 1 0.5959 -0.2186 4.9003 32 1 4.0149 0.1067 6.4235 33 1 4.4779 -1.3353 8.4700 34 1 2.6718 -3.0455 8.9722 35 1 0.7900 -2.1448 -2.0766 36 1 2.5008 -2.6050 -1.9040 37 1 1.4393 -2.5732 -0.4756 38 1 2.1488 -1.7168 -4.7627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114716962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:56 Heat of formation + Delta-G solvation = 19.106757 kcal Electronic energy + Delta-G solvation = -19484.919566 eV Core-core repulsion = 16455.000664 eV Total energy + Delta-G solvation = -3029.918902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.27911 -38.16742 -35.71061 -34.80734 -32.47251 -31.62940 -29.17931 -27.72104 -25.88888 -24.68717 -23.77386 -22.46438 -21.30919 -19.59583 -19.22555 -17.26935 -16.86666 -16.18561 -15.85854 -15.53275 -15.13763 -14.68076 -14.03685 -13.74864 -13.39327 -13.17899 -12.98669 -12.69310 -12.53473 -12.43832 -12.26482 -11.94840 -11.63021 -11.38601 -11.25610 -10.92975 -10.80764 -10.71583 -10.54393 -10.26983 -10.00058 -9.80579 -9.06162 -8.86616 -8.72657 -8.63726 -8.45073 -6.74229 -5.67137 -3.11321 0.75526 1.40192 1.77826 2.51273 3.38709 3.42121 3.49299 3.49611 3.58891 4.53220 4.63516 4.80185 4.87316 4.90572 5.21301 5.34320 5.39624 5.46253 5.48888 5.59273 5.74509 5.92759 5.94219 6.00653 6.05256 6.08332 6.25948 6.26903 6.56275 6.80304 6.86485 7.04221 7.59806 7.78985 7.90089 7.96771 8.41846 8.91681 9.27701 9.90008 10.37759 11.37278 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035356 B = 0.003070 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.753622 B = 9117.010863 C = 9365.025657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.159 3.841 3 H 0.088 0.912 4 C 0.491 3.509 5 O -0.524 6.524 6 N -0.745 5.745 7 C 0.126 3.874 8 C -0.060 4.060 9 C -0.167 4.167 10 C -0.139 4.139 11 C -0.133 4.133 12 C -0.218 4.218 13 S 0.100 5.900 14 N -0.573 5.573 15 C 0.170 3.830 16 C -0.258 4.258 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.280 1.280 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.395 0.605 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.026 0.974 36 H 0.040 0.960 37 H 0.007 0.993 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 2.721 23.103 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.106 0.894 4 C 0.276 3.724 5 O -0.398 6.398 6 N -0.401 5.401 7 C 0.001 3.999 8 C -0.100 4.100 9 C -0.285 4.285 10 C -0.169 4.169 11 C -0.164 4.164 12 C -0.354 4.354 13 S 0.363 5.637 14 N -0.293 5.293 15 C 0.026 3.974 16 C -0.387 4.387 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.548 5.548 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.206 1.206 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.229 0.771 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.894 1.097 22.566 22.926 hybrid contribution 1.906 1.249 -0.175 2.286 sum -1.988 2.347 22.391 22.601 Atomic orbital electron populations 1.22237 0.96333 1.01799 1.00969 1.20237 0.93400 0.96015 0.85799 0.89423 1.22815 0.79674 0.85195 0.84693 1.90638 1.36679 1.26043 1.86403 1.46340 1.55475 1.32684 1.05568 1.21191 0.99493 0.96260 0.82995 1.20340 1.01258 0.99010 0.89362 1.24324 0.99629 1.02370 1.02196 1.20173 0.97437 1.02603 0.96695 1.20179 1.00626 0.96861 0.98708 1.25623 0.99025 1.05858 1.04879 1.84374 1.23290 1.33901 1.22105 1.43661 1.57879 1.08559 1.19234 1.20726 0.99307 0.82821 0.94545 1.19209 1.20143 1.09440 0.89933 0.91395 1.24925 0.98557 0.99497 0.96479 1.70116 1.35086 1.33557 1.16000 0.86248 0.82070 0.78380 0.79660 1.21445 1.21753 1.20558 0.92921 0.93809 0.91454 0.77133 0.91661 0.91869 0.89249 0.90088 0.84172 0.84333 0.82001 0.95607 0.94110 0.97485 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.09 37.16 0.34 -2.31 16 2 C 0.16 3.26 3.12 -69.08 -0.22 3.05 16 3 H 0.09 1.69 7.85 -51.93 -0.41 1.28 16 4 C 0.49 9.63 6.85 -10.99 -0.08 9.56 16 5 O -0.52 -12.71 14.60 5.56 0.08 -12.63 16 6 N -0.74 -10.45 5.45 -60.30 -0.33 -10.78 16 7 C 0.13 1.61 5.66 -4.04 -0.02 1.58 16 8 C -0.06 -0.55 5.82 -27.88 -0.16 -0.71 16 9 C -0.17 -1.64 5.76 -36.00 -0.21 -1.85 16 10 C -0.14 -1.30 10.05 -41.21 -0.41 -1.71 16 11 C -0.13 -1.15 10.18 -41.21 -0.42 -1.57 16 12 C -0.22 -1.85 11.23 29.04 0.33 -1.52 16 13 S 0.10 0.94 23.33 -107.50 -2.51 -1.57 16 14 N -0.57 -15.06 2.59 -174.81 -0.45 -15.51 16 15 C 0.17 4.59 7.47 59.85 0.45 5.04 16 16 C -0.26 -7.31 9.61 -15.06 -0.14 -7.45 16 17 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 18 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 19 N -0.90 -27.02 10.67 55.49 0.59 -26.43 16 20 Si 0.91 22.42 29.58 -169.99 -5.03 17.39 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 25 H 0.04 0.56 7.56 -51.93 -0.39 0.17 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.40 4.21 7.89 -40.82 -0.32 3.89 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.03 0.72 7.39 -51.93 -0.38 0.34 16 36 H 0.04 1.20 7.23 -51.93 -0.38 0.82 16 37 H 0.01 0.17 6.43 -51.93 -0.33 -0.16 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -34.05 330.49 -8.84 -42.90 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.54 Total: -0.48 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.64 Total: 2.13 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.19 Total: -52.72 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.05 -8.84 -42.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114716962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.003 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds