Wall clock time and date at job start Tue Mar 31 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47225 * 2 1 4 4 C 1.36945 * 119.99961 * 269.74716 * 3 2 1 5 5 H 1.08000 * 119.99615 * 322.10322 * 4 3 2 6 6 C 1.38816 * 119.99743 * 142.09708 * 4 3 2 7 7 N 1.31619 * 119.99649 * 156.97627 * 6 4 3 8 8 Si 1.86799 * 120.00002 * 336.97740 * 6 4 3 9 9 H 1.48494 * 109.47121 * 95.70173 * 8 6 4 10 10 H 1.48504 * 109.46972 * 215.70116 * 8 6 4 11 11 H 1.48501 * 109.47068 * 335.69995 * 8 6 4 12 12 C 1.46503 * 120.00379 * 89.75328 * 3 2 1 13 13 C 1.50699 * 109.46950 * 89.99750 * 12 3 2 14 14 O 1.21276 * 120.00546 * 359.97438 * 13 12 3 15 15 N 1.34783 * 119.99818 * 180.02562 * 13 12 3 16 16 C 1.46499 * 120.00042 * 179.72840 * 15 13 12 17 17 H 1.08995 * 109.46815 * 325.26845 * 16 15 13 18 18 C 1.52999 * 109.47395 * 85.27446 * 16 15 13 19 19 C 1.50708 * 109.46727 * 205.27194 * 16 15 13 20 20 C 1.33388 * 125.20195 * 139.99792 * 19 16 15 21 21 C 1.38420 * 114.92052 * 179.97438 * 20 19 16 22 22 C 1.33388 * 114.92364 * 0.02562 * 21 20 19 23 23 S 1.75876 * 125.20336 * 319.69130 * 19 16 15 24 24 H 1.08997 * 109.46302 * 59.99899 * 1 2 3 25 25 H 1.08993 * 109.46832 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46914 * 300.00373 * 1 2 3 27 27 H 1.08996 * 109.47294 * 239.99414 * 2 1 3 28 28 H 1.09002 * 109.47142 * 119.99896 * 2 1 3 29 29 H 0.96996 * 119.99965 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46662 * 329.99892 * 12 3 2 31 31 H 1.08996 * 109.47412 * 210.00034 * 12 3 2 32 32 H 0.97000 * 119.99584 * 359.97438 * 15 13 12 33 33 H 1.09004 * 109.46795 * 299.99434 * 18 16 15 34 34 H 1.08988 * 109.47241 * 59.99350 * 18 16 15 35 35 H 1.08996 * 109.46850 * 180.02562 * 18 16 15 36 36 H 1.08004 * 122.53775 * 0.02562 * 20 19 16 37 37 H 1.08000 * 122.53958 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.20517 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2516 2.0250 -1.1860 5 1 2.6736 1.4841 -2.0201 6 6 1.9453 3.3727 -1.3160 7 7 2.5502 4.0996 -2.2315 8 14 0.6749 4.1545 -0.1916 9 1 1.3604 4.8000 0.9565 10 1 -0.0932 5.1761 -0.9476 11 1 -0.2526 3.1087 0.3098 12 6 2.2574 2.0737 1.2687 13 6 3.6789 1.8374 1.7098 14 8 4.4193 1.1572 1.0316 15 7 4.1272 2.3813 2.8587 16 6 5.5073 2.1467 3.2906 17 1 5.8118 1.1404 3.0031 18 6 6.4308 3.1689 2.6248 19 6 5.5961 2.2900 4.7882 20 6 6.3193 1.5105 5.5936 21 6 6.2464 1.8336 6.9376 22 6 5.4636 2.8751 7.2238 23 16 4.7683 3.5152 5.7404 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.3360 5.0412 -2.3226 30 1 1.5735 1.6907 2.0261 31 1 2.0910 3.1427 1.1361 32 1 3.5349 2.9250 3.4013 33 1 6.3665 3.0653 1.5416 34 1 6.1261 4.1751 2.9122 35 1 7.4576 2.9941 2.9459 36 1 6.9170 0.6900 5.2250 37 1 6.7826 1.2840 7.6971 38 1 5.2873 3.2679 8.2142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121002002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:34 Heat of formation + Delta-G solvation = 23.906793 kcal Electronic energy + Delta-G solvation = -20153.128936 eV Core-core repulsion = 17123.418179 eV Total energy + Delta-G solvation = -3029.710757 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.29701 -37.96374 -35.96569 -34.77895 -31.90060 -31.29021 -29.76923 -28.48763 -26.71053 -24.48862 -23.78145 -22.18183 -20.58505 -20.06239 -19.07817 -17.88837 -16.79072 -16.30478 -15.52439 -15.47971 -15.03453 -14.32420 -14.25913 -13.70701 -13.31071 -13.24735 -13.01412 -12.84966 -12.65395 -12.39793 -12.27139 -11.99466 -11.78290 -11.71729 -11.36591 -11.29550 -10.87767 -10.75441 -10.59343 -10.15910 -9.98817 -9.61530 -9.17872 -8.89098 -8.64869 -8.61339 -8.50237 -6.86301 -5.99730 -3.39666 0.83087 1.45007 1.84931 2.57673 3.21427 3.37283 3.44628 3.51263 3.64061 4.48209 4.55785 4.88743 4.98345 5.25629 5.30573 5.34858 5.40710 5.43195 5.63854 5.82767 5.90548 5.93868 5.98424 6.09631 6.11674 6.15020 6.28623 6.30424 6.38700 6.38986 6.52560 6.83866 6.87132 7.08408 7.89664 8.08487 8.42596 8.87516 9.04211 9.69090 10.08304 11.16062 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.004815 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.316130 B = 5813.174206 C = 6026.560854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 N -0.579 5.579 4 C -0.257 4.257 5 H 0.080 0.920 6 C 0.034 3.966 7 N -0.894 5.894 8 Si 0.865 3.135 9 H -0.286 1.286 10 H -0.298 1.298 11 H -0.263 1.263 12 C 0.118 3.882 13 C 0.490 3.510 14 O -0.516 6.516 15 N -0.744 5.744 16 C 0.213 3.787 17 H 0.102 0.898 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.136 4.136 21 C -0.131 4.131 22 C -0.219 4.219 23 S 0.103 5.897 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.391 0.609 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -2.380 19.060 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 N -0.299 5.299 4 C -0.386 4.386 5 H 0.097 0.903 6 C -0.166 4.166 7 N -0.535 5.535 8 Si 0.694 3.306 9 H -0.215 1.215 10 H -0.225 1.225 11 H -0.187 1.187 12 C -0.012 4.012 13 C 0.275 3.725 14 O -0.388 6.388 15 N -0.401 5.401 16 C 0.106 3.894 17 H 0.120 0.880 18 C -0.217 4.217 19 C -0.291 4.291 20 C -0.167 4.167 21 C -0.162 4.162 22 C -0.354 4.354 23 S 0.366 5.634 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.224 0.776 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.649 -1.573 18.048 18.480 hybrid contribution 0.101 -0.109 1.389 1.397 sum 3.750 -1.682 19.437 19.867 Atomic orbital electron populations 1.22336 0.99408 0.99364 1.01682 1.20842 0.91502 0.85726 0.99515 1.43764 1.73719 1.11552 1.00841 1.18791 1.36073 0.93412 0.90326 0.90257 1.25479 0.97903 0.96673 0.96577 1.69901 1.40553 1.06825 1.36238 0.87098 0.84253 0.79064 0.80162 1.21482 1.22528 1.18708 1.21360 0.90372 0.99275 0.90239 1.22972 0.92476 0.78220 0.78866 1.90610 1.57868 1.37872 1.52477 1.46634 1.12125 1.55569 1.25733 1.19247 0.84068 1.01144 0.84987 0.88045 1.22200 0.98648 0.98558 1.02343 1.24846 1.04314 1.00535 0.99414 1.20114 1.02301 1.01686 0.92582 1.20152 1.01134 0.98421 0.96510 1.25622 1.05367 1.02761 1.01683 1.84327 1.48882 1.32347 0.97843 0.92355 0.94051 0.94070 0.92679 0.94451 0.92723 0.91257 0.90172 0.77576 0.90696 0.92464 0.91833 0.84101 0.84303 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.24 37.16 0.38 -2.70 16 2 C 0.15 3.10 6.39 -4.04 -0.03 3.08 16 3 N -0.58 -14.05 1.56 -174.61 -0.27 -14.32 16 4 C -0.26 -7.33 9.90 -15.05 -0.15 -7.48 16 5 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 6 C 0.03 0.98 5.29 -17.43 -0.09 0.89 16 7 N -0.89 -27.46 13.97 55.49 0.78 -26.69 16 8 Si 0.86 21.30 25.10 -169.99 -4.27 17.04 16 9 H -0.29 -6.71 6.68 56.52 0.38 -6.33 16 10 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.12 2.55 5.00 -5.19 -0.03 2.52 16 13 C 0.49 10.27 7.87 -10.98 -0.09 10.18 16 14 O -0.52 -12.67 16.09 5.56 0.09 -12.58 16 15 N -0.74 -12.35 5.06 -54.93 -0.28 -12.62 16 16 C 0.21 3.13 3.01 -69.08 -0.21 2.92 16 17 H 0.10 1.60 7.55 -51.93 -0.39 1.21 16 18 C -0.16 -2.31 9.47 37.16 0.35 -1.95 16 19 C -0.17 -2.13 5.44 -36.00 -0.20 -2.32 16 20 C -0.14 -1.47 10.04 -41.21 -0.41 -1.89 16 21 C -0.13 -1.23 10.18 -41.21 -0.42 -1.65 16 22 C -0.22 -2.03 11.23 29.04 0.33 -1.70 16 23 S 0.10 1.12 22.32 -107.50 -2.40 -1.28 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 28 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.08 1.84 3.37 -51.93 -0.18 1.66 16 32 H 0.39 5.68 7.69 -40.82 -0.31 5.37 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 0.80 8.14 -51.94 -0.42 0.37 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -32.88 331.22 -7.44 -40.32 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.52 Total: 5.26 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.56 Total: -0.11 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.23 Total: -53.63 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.27 Total: 17.04 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.40 Total: -1.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.88 -7.44 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121002002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.230 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds