Wall clock time and date at job start Tue Mar 31 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99823 * 2 1 4 4 C 1.53007 * 109.46769 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47424 * 67.49078 * 4 3 2 6 6 C 1.46506 * 119.99722 * 278.18811 * 5 4 3 7 7 C 1.50693 * 109.47185 * 270.00005 * 6 5 4 8 8 H 1.08004 * 119.99860 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99971 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99986 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99857 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47033 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46815 * 119.99881 * 11 9 7 14 14 H 1.48493 * 109.46832 * 239.99995 * 11 9 7 15 15 C 1.34773 * 120.00218 * 98.18391 * 5 4 3 16 16 O 1.21547 * 120.00236 * 186.10005 * 15 5 4 17 17 C 1.47850 * 119.99777 * 6.10781 * 15 5 4 18 18 C 1.39552 * 120.54506 * 135.45461 * 17 15 5 19 19 N 1.31656 * 120.62157 * 179.97438 * 18 17 15 20 20 C 1.31945 * 121.90758 * 359.97438 * 19 18 17 21 21 C 1.38534 * 121.04335 * 359.97438 * 20 19 18 22 22 F 1.35101 * 120.37629 * 180.02562 * 21 20 19 23 23 C 1.38620 * 119.25442 * 0.02562 * 21 20 19 24 24 H 1.09002 * 109.47186 * 300.00195 * 1 2 3 25 25 H 1.08993 * 109.47001 * 59.99832 * 1 2 3 26 26 H 1.08999 * 109.46759 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47270 * 60.00248 * 3 2 1 28 28 H 1.09000 * 109.47144 * 299.99644 * 3 2 1 29 29 H 1.09000 * 109.46853 * 307.48369 * 4 3 2 30 30 H 1.08996 * 109.46686 * 187.48969 * 4 3 2 31 31 H 1.09006 * 109.47016 * 30.00011 * 6 5 4 32 32 H 1.08999 * 109.46781 * 149.99770 * 6 5 4 33 33 H 0.97004 * 119.99635 * 179.97438 * 10 9 7 34 34 H 1.08005 * 119.69285 * 359.97438 * 18 17 15 35 35 H 1.07993 * 119.47750 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.86635 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9801 0.6192 -1.2769 6 6 3.9392 -0.8298 -1.4900 7 6 5.2465 -1.4388 -1.0530 8 1 6.0297 -0.8095 -0.6566 9 6 5.4432 -2.7993 -1.1602 10 7 4.4901 -3.5653 -1.6442 11 14 7.0641 -3.5541 -0.6192 12 1 7.9640 -2.4857 -0.1154 13 1 6.8141 -4.5407 0.4622 14 1 7.7022 -4.2361 -1.7736 15 6 4.4266 1.4318 -2.2550 16 8 4.6904 0.9762 -3.3505 17 6 4.5955 2.8775 -1.9953 18 6 5.7416 3.5464 -2.4271 19 7 5.8934 4.8338 -2.1971 20 6 4.9811 5.5402 -1.5571 21 6 3.8147 4.9513 -1.0969 22 9 2.8893 5.6876 -0.4437 23 6 3.6077 3.5980 -1.3142 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8486 0.5323 0.8146 30 1 3.9781 2.1716 0.1333 31 1 3.1250 -1.2600 -0.9067 32 1 3.7774 -1.0370 -2.5478 33 1 4.6287 -4.5224 -1.7200 34 1 6.5114 3.0029 -2.9549 35 1 5.1462 6.5942 -1.3895 36 1 2.7077 3.1123 -0.9670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124875982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:36 Heat of formation + Delta-G solvation = -72.151273 kcal Electronic energy + Delta-G solvation = -22401.893713 eV Core-core repulsion = 18801.804390 eV Total energy + Delta-G solvation = -3600.089323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.18471 -40.62084 -38.73921 -37.59388 -35.11191 -33.21728 -32.23289 -31.05119 -29.76277 -27.36593 -26.11652 -24.68646 -23.85438 -22.88616 -22.40462 -19.37574 -17.68821 -17.58046 -17.19723 -16.55475 -16.32024 -16.04727 -15.99746 -15.44615 -15.20266 -14.78763 -14.32998 -14.21565 -13.80916 -13.55188 -13.38167 -12.97128 -12.45743 -12.33292 -12.00328 -11.87317 -11.80929 -11.32160 -11.00051 -10.89142 -10.53983 -10.19868 -10.12068 -9.90814 -9.62338 -9.49564 -9.20980 -9.05555 -8.40337 -7.78684 -6.02329 -4.06917 0.56280 0.80614 3.04542 3.30920 3.38148 3.40740 3.50390 3.63103 3.88220 3.93259 4.25863 4.41969 4.45694 4.56218 4.64640 5.03319 5.16699 5.26112 5.32878 5.33742 5.44886 5.47852 5.48812 5.53651 5.55601 5.81406 5.83435 6.11934 6.36800 7.09898 7.30100 7.42121 7.56045 7.59017 7.94342 8.24413 8.26730 8.74192 8.98673 9.57152 11.05857 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.005905 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.140630 B = 4740.580931 C = 5994.958343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.039 3.961 4 C 0.098 3.902 5 N -0.576 5.576 6 C 0.245 3.755 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.548 3.452 16 O -0.524 6.524 17 C -0.134 4.134 18 C 0.139 3.861 19 N -0.458 5.458 20 C 0.083 3.917 21 C 0.041 3.959 22 F -0.130 7.130 23 C -0.100 4.100 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.175 0.825 35 H 0.169 0.831 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.638 15.615 4.783 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.038 4.038 4 C -0.026 4.026 5 N -0.306 5.306 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.332 3.668 16 O -0.401 6.401 17 C -0.139 4.139 18 C -0.019 4.019 19 N -0.165 5.165 20 C -0.076 4.076 21 C 0.019 3.981 22 F -0.108 7.108 23 C -0.126 4.126 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.192 0.808 35 H 0.186 0.814 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.710 15.397 3.894 16.566 hybrid contribution -0.400 -0.493 0.828 1.044 sum -5.110 14.904 4.722 16.448 Atomic orbital electron populations 1.22738 0.81815 1.02871 0.99205 1.88142 1.18936 1.26202 1.95095 1.23197 0.95065 0.86036 0.99538 1.21799 0.91556 1.00169 0.89094 1.48190 1.60274 1.10053 1.12117 1.19504 0.97835 0.71082 0.98943 1.21466 1.00295 0.92477 1.42605 0.92487 1.24904 0.96852 0.96990 0.95189 1.69951 1.32587 1.05139 1.45317 0.86470 0.83670 0.79152 0.78278 1.19833 1.20977 1.20891 1.17889 0.79319 0.84222 0.85355 1.90799 1.50624 1.75789 1.22890 1.21338 0.96171 0.97003 0.99399 1.23064 0.95569 0.89350 0.93899 1.67819 1.28938 1.07633 1.12114 1.23051 0.88581 1.01181 0.94780 1.18645 0.89915 0.90091 0.99422 1.91529 1.64270 1.76394 1.78625 1.22326 1.00958 0.92525 0.96815 0.94568 0.94474 0.89503 0.92551 0.93517 0.88555 0.89585 0.92596 0.93892 0.92805 0.80814 0.81386 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.12 8.93 -35.23 -0.31 -6.43 16 3 C 0.04 0.54 5.23 37.16 0.19 0.74 16 4 C 0.10 1.56 5.34 -4.04 -0.02 1.54 16 5 N -0.58 -11.94 2.46 -176.17 -0.43 -12.37 16 6 C 0.24 6.33 5.07 -5.19 -0.03 6.31 16 7 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 11 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.55 11.16 7.30 -12.33 -0.09 11.07 16 16 O -0.52 -12.84 16.54 5.32 0.09 -12.75 16 17 C -0.13 -2.09 5.13 -104.83 -0.54 -2.63 16 18 C 0.14 2.04 10.85 -17.14 -0.19 1.85 16 19 N -0.46 -6.09 10.34 -12.86 -0.13 -6.22 16 20 C 0.08 0.91 11.16 -17.39 -0.19 0.72 16 21 C 0.04 0.46 7.33 -39.33 -0.29 0.18 16 22 F -0.13 -1.39 17.28 2.25 0.04 -1.35 16 23 C -0.10 -1.27 7.51 -38.80 -0.29 -1.57 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 6.41 -51.93 -0.33 0.28 16 29 H 0.10 1.62 8.13 -51.93 -0.42 1.20 16 30 H 0.09 1.14 4.97 -51.93 -0.26 0.88 16 31 H 0.06 1.50 6.45 -51.93 -0.33 1.16 16 32 H 0.04 1.26 7.35 -51.93 -0.38 0.88 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.17 2.49 8.06 -52.48 -0.42 2.06 16 35 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.16 1.84 3.79 -52.49 -0.20 1.64 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -33.08 312.40 -5.09 -38.17 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.01 Total: -1.02 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.75 Total: 6.23 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.17 Total: -44.26 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.23 Total: -19.18 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.08 -5.09 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124875982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.983 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds