Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00177 * 2 1 4 4 C 1.38767 * 120.00649 * 0.02562 * 3 2 1 5 5 C 1.38394 * 120.05630 * 180.02562 * 4 3 2 6 6 F 1.35104 * 119.96129 * 179.97438 * 5 4 3 7 7 C 1.38396 * 120.07660 * 359.95923 * 5 4 3 8 8 C 1.38846 * 120.01319 * 0.02562 * 7 5 4 9 9 N 1.39935 * 120.02867 * 180.02562 * 8 7 5 10 10 C 1.34771 * 119.99890 * 324.87814 * 9 8 7 11 11 O 1.21587 * 120.00188 * 4.58271 * 10 9 8 12 12 N 1.34782 * 119.99954 * 184.58254 * 10 9 8 13 13 C 1.46501 * 119.99973 * 359.97438 * 12 10 9 14 14 C 1.46501 * 119.99824 * 179.97438 * 12 10 9 15 15 C 1.50699 * 109.46887 * 90.00022 * 14 12 10 16 16 H 1.08003 * 120.00536 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00051 * 179.97438 * 15 14 12 18 18 N 1.31518 * 119.99638 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00374 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46626 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47280 * 119.99886 * 19 17 15 22 22 H 1.48501 * 109.46810 * 240.00410 * 19 17 15 23 23 C 1.38598 * 120.00869 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.46809 * 299.99983 * 1 2 3 25 25 H 1.09004 * 109.46924 * 59.99641 * 1 2 3 26 26 H 1.08997 * 109.47383 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.96793 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.99490 * 180.02562 * 7 5 4 29 29 H 0.96999 * 120.00218 * 144.88051 * 9 8 7 30 30 H 1.09003 * 109.46542 * 89.99861 * 13 12 10 31 31 H 1.08999 * 109.46983 * 210.00084 * 13 12 10 32 32 H 1.08997 * 109.47080 * 330.00287 * 13 12 10 33 33 H 1.08998 * 109.46960 * 209.99952 * 14 12 10 34 34 H 1.08993 * 109.47510 * 329.99894 * 14 12 10 35 35 H 0.97002 * 119.99700 * 179.97438 * 18 17 15 36 36 H 1.08006 * 120.03798 * 0.25990 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3747 0.0005 5 6 1.9177 3.6084 0.0000 6 9 1.1802 4.7403 0.0000 7 6 3.2996 3.6838 -0.0002 8 6 4.0586 2.5212 -0.0004 9 7 5.4559 2.5971 -0.0001 10 6 6.0771 3.5871 -0.6712 11 8 5.4238 4.4614 -1.2070 12 7 7.4226 3.6080 -0.7482 13 6 8.2097 2.5549 -0.1021 14 6 8.0978 4.6839 -1.4781 15 6 8.3855 5.8255 -0.5374 16 1 8.0949 5.7564 0.5005 17 6 9.0207 6.9578 -1.0014 18 7 9.3750 7.0418 -2.2652 19 14 9.3780 8.3727 0.1648 20 1 8.8819 8.0323 1.5224 21 1 10.8425 8.6125 0.2181 22 1 8.6929 9.5981 -0.3192 23 6 3.4301 1.2835 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2120 2.3178 0.0014 28 1 3.7877 4.6472 -0.0002 29 1 5.9774 1.9371 0.4830 30 1 8.3642 1.7348 -0.8033 31 1 9.1750 2.9585 0.2035 32 1 7.6755 2.1878 0.7742 33 1 9.0339 4.3099 -1.8926 34 1 7.4560 5.0327 -2.2871 35 1 9.8216 7.8386 -2.5917 36 1 4.0191 0.3782 -0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125477883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -70.120470 kcal Electronic energy + Delta-G solvation = -21681.905257 eV Core-core repulsion = 18081.903996 eV Total energy + Delta-G solvation = -3600.001261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.80261 -40.53398 -39.57871 -37.34915 -34.96239 -34.19476 -32.54862 -30.41618 -29.39653 -27.76963 -27.36143 -25.84857 -23.43997 -22.74027 -21.83777 -19.72083 -18.70638 -17.52888 -16.87819 -16.56840 -16.33521 -16.06044 -15.78698 -15.63396 -15.31918 -14.89006 -14.62851 -14.44442 -13.91877 -13.24771 -13.20587 -12.84869 -12.48612 -12.41113 -12.22136 -12.00044 -11.68283 -11.51689 -11.25190 -11.20174 -10.90641 -10.61823 -10.18108 -9.95043 -9.66666 -9.33254 -8.45755 -8.36939 -8.13004 -7.68634 -6.06425 -4.11335 1.12521 1.34467 2.77202 3.28116 3.29270 3.37324 3.41735 3.47837 3.89055 4.22341 4.38356 4.49008 4.81249 4.87267 4.91231 5.03938 5.15097 5.23933 5.28055 5.33828 5.44302 5.68848 5.80799 6.03500 6.06528 6.16932 6.27181 6.50955 6.73104 6.93763 7.22625 7.29430 7.43578 7.59085 7.90819 8.19551 8.47280 8.89012 9.13270 9.54131 11.01560 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026142 B = 0.003917 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.796129 B = 7147.148742 C = 7872.676718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.171 3.829 4 C -0.271 4.271 5 C 0.157 3.843 6 F -0.135 7.135 7 C -0.191 4.191 8 C 0.248 3.752 9 N -0.693 5.693 10 C 0.697 3.303 11 O -0.563 6.563 12 N -0.609 5.609 13 C 0.082 3.918 14 C 0.259 3.741 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.199 4.199 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.406 0.594 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 -15.418 6.208 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.125 3.875 4 C -0.292 4.292 5 C 0.137 3.863 6 F -0.113 7.113 7 C -0.213 4.213 8 C 0.150 3.850 9 N -0.342 5.342 10 C 0.398 3.602 11 O -0.439 6.439 12 N -0.344 5.344 13 C -0.062 4.062 14 C 0.139 3.861 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.221 4.221 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.155 0.845 28 H 0.178 0.822 29 H 0.244 0.756 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.282 -14.758 5.627 20.637 hybrid contribution 0.183 0.817 0.841 1.187 sum -13.099 -13.942 6.468 20.194 Atomic orbital electron populations 1.23086 0.78209 1.03926 1.01659 1.86069 1.21523 1.26356 1.88613 1.18156 0.91207 0.83577 0.94562 1.20979 1.00774 0.91123 1.16320 1.17104 0.88720 0.81411 0.99091 1.91504 1.76833 1.49454 1.93549 1.21335 0.91475 1.01159 1.07326 1.16771 0.82604 0.91804 0.93816 1.42981 1.04000 1.32558 1.54676 1.15921 0.82913 0.81528 0.79789 1.90911 1.64012 1.37893 1.51043 1.47527 1.02748 1.28473 1.55690 1.21625 0.97681 0.90847 0.96034 1.19294 0.91973 0.82836 0.91949 1.21483 1.38062 1.00948 0.96213 0.92365 1.24934 0.95576 0.98318 0.95258 1.69941 1.40637 1.28911 1.13817 0.86431 0.77724 0.82224 0.80969 1.19818 1.20963 1.20833 1.19978 0.91702 0.97190 1.13274 0.92475 0.92436 0.88173 0.84527 0.82233 0.75622 0.93440 0.90111 0.93100 0.94608 0.93564 0.92712 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.37 10.49 -19.41 -0.20 -3.57 16 3 C 0.17 2.13 6.68 -39.25 -0.26 1.87 16 4 C -0.27 -3.43 9.01 -39.33 -0.35 -3.78 16 5 C 0.16 2.40 7.29 -39.47 -0.29 2.11 16 6 F -0.13 -2.13 17.26 2.25 0.04 -2.09 16 7 C -0.19 -3.30 8.67 -39.30 -0.34 -3.65 16 8 C 0.25 3.86 6.29 -83.72 -0.53 3.33 16 9 N -0.69 -10.92 5.21 -14.25 -0.07 -11.00 16 10 C 0.70 14.57 8.12 -86.92 -0.71 13.86 16 11 O -0.56 -14.18 13.35 5.29 0.07 -14.11 16 12 N -0.61 -12.65 2.86 -188.74 -0.54 -13.19 16 13 C 0.08 1.22 10.24 59.85 0.61 1.83 16 14 C 0.26 6.66 5.16 -5.19 -0.03 6.63 16 15 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 16 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 19 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.20 -2.58 9.90 -39.24 -0.39 -2.97 16 24 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 25 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.14 1.37 6.29 -52.49 -0.33 1.04 16 28 H 0.16 3.23 6.22 -52.49 -0.33 2.91 16 29 H 0.41 4.90 6.52 -40.82 -0.27 4.63 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.05 0.59 6.30 -51.93 -0.33 0.26 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -33.54 314.03 -6.05 -39.59 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.08 Total: 1.59 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.71 Total: 6.92 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.12 Total: -49.84 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.13 Total: -17.68 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.54 -6.05 -39.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125477883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.530 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds