Wall clock time and date at job start Tue Mar 31 2020 05:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35980 * 117.00298 * 2 1 4 4 C 1.38544 * 120.06595 * 0.02562 * 3 2 1 5 5 C 1.38428 * 119.99174 * 179.97438 * 4 3 2 6 6 F 1.35100 * 119.93764 * 179.97438 * 5 4 3 7 7 C 1.38472 * 120.12589 * 0.02562 * 5 4 3 8 8 C 1.38208 * 120.13446 * 359.74905 * 7 5 4 9 9 C 1.38689 * 120.00653 * 0.50205 * 8 7 5 10 10 N 1.40284 * 120.06483 * 179.77159 * 9 8 7 11 11 C 1.34787 * 119.99857 * 325.36336 * 10 9 8 12 12 O 1.21598 * 119.99476 * 4.45342 * 11 10 9 13 13 N 1.34769 * 119.99925 * 184.45159 * 11 10 9 14 14 C 1.46500 * 120.00087 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47259 * 325.00927 * 14 13 11 16 16 C 1.53005 * 109.46681 * 85.00204 * 14 13 11 17 17 C 1.50699 * 109.47642 * 205.00271 * 14 13 11 18 18 H 1.07998 * 120.00004 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99876 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99674 * 180.02562 * 19 17 14 21 21 Si 1.86799 * 120.00240 * 359.97438 * 19 17 14 22 22 H 1.48493 * 109.47152 * 90.00358 * 21 19 17 23 23 H 1.48499 * 109.46896 * 210.00104 * 21 19 17 24 24 H 1.48499 * 109.47276 * 330.00095 * 21 19 17 25 25 H 1.08997 * 109.47113 * 59.99958 * 1 2 3 26 26 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46716 * 300.00171 * 1 2 3 28 28 H 1.07999 * 120.00633 * 359.96055 * 4 3 2 29 29 H 1.07997 * 119.93206 * 179.97438 * 7 5 4 30 30 H 1.07997 * 119.99671 * 180.25506 * 8 7 5 31 31 H 0.97000 * 120.00467 * 145.63062 * 10 9 8 32 32 H 0.97001 * 120.00373 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.46835 * 180.02562 * 16 14 13 34 34 H 1.09005 * 109.47243 * 300.00128 * 16 14 13 35 35 H 1.09001 * 109.47124 * 60.00211 * 16 14 13 36 36 H 0.97005 * 120.00151 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2932 2.3744 0.0005 5 6 1.9234 3.6069 0.0011 6 9 1.1878 4.7402 0.0011 7 6 3.3061 3.6806 0.0005 8 6 4.0626 2.5239 0.0047 9 6 3.4371 1.2861 -0.0011 10 7 4.2037 0.1113 -0.0017 11 6 5.3787 0.0736 -0.6611 12 8 5.8131 1.0803 -1.1869 13 7 6.0719 -1.0796 -0.7374 14 6 7.3487 -1.1206 -1.4546 15 1 7.3050 -0.4503 -2.3129 16 6 8.4741 -0.6769 -0.5178 17 6 7.6141 -2.5265 -1.9280 18 1 6.9026 -3.3109 -1.7163 19 6 8.7652 -2.8112 -2.6314 20 7 8.9965 -4.0380 -3.0450 21 14 9.9955 -1.4543 -2.9982 22 1 10.9862 -1.3730 -1.8951 23 1 10.6969 -1.7534 -4.2725 24 1 9.2813 -0.1579 -3.1188 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2147 2.3193 0.0003 29 1 3.7945 4.6439 0.0005 30 1 5.1408 2.5839 0.0084 31 1 3.8864 -0.6752 0.4691 32 1 5.7251 -1.8826 -0.3182 33 1 9.4241 -0.7070 -1.0515 34 1 8.2822 0.3400 -0.1754 35 1 8.5178 -1.3472 0.3406 36 1 9.8062 -4.2384 -3.5402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154710333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:03 Heat of formation + Delta-G solvation = -74.384580 kcal Electronic energy + Delta-G solvation = -21760.426862 eV Core-core repulsion = 18160.240695 eV Total energy + Delta-G solvation = -3600.186167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.95804 -40.72037 -39.33230 -37.33958 -35.28719 -34.23368 -32.41459 -30.52449 -30.23886 -28.72309 -27.28900 -25.19361 -23.25429 -22.60041 -21.25980 -20.00379 -18.76388 -18.37252 -17.51603 -16.85657 -16.30390 -16.11456 -15.79668 -15.46072 -15.32699 -14.87585 -14.61595 -14.32752 -14.18213 -13.31315 -13.14900 -12.92968 -12.88701 -12.59061 -12.20008 -11.90121 -11.76974 -11.61638 -11.36689 -11.15761 -10.81041 -10.20816 -10.12740 -9.76133 -9.47015 -9.24369 -8.80955 -8.77025 -8.27642 -7.70894 -6.21542 -4.24282 1.05256 1.16804 2.90652 3.05637 3.23565 3.35940 3.37009 3.40604 3.79623 4.16460 4.31336 4.59089 4.67071 4.79712 4.90144 4.92753 5.03259 5.13509 5.24015 5.40852 5.66421 5.87547 6.03231 6.21745 6.29976 6.36013 6.49826 6.55344 6.73084 6.79183 7.02447 7.18641 7.28266 7.44847 7.52030 8.25612 8.58934 8.77076 9.04622 9.39160 10.90606 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.003928 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.110048 B = 7127.322944 C = 7862.702943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.121 3.879 4 C -0.227 4.227 5 C 0.109 3.891 6 F -0.142 7.142 7 C -0.167 4.167 8 C -0.060 4.060 9 C 0.145 3.855 10 N -0.685 5.685 11 C 0.697 3.303 12 O -0.587 6.587 13 N -0.710 5.710 14 C 0.253 3.747 15 H 0.050 0.950 16 C -0.162 4.162 17 C -0.535 4.535 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.892 5.892 21 Si 0.886 3.114 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.261 1.261 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.408 0.592 32 H 0.394 0.606 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.053 0.947 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.897 10.398 8.948 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.073 3.927 4 C -0.248 4.248 5 C 0.089 3.911 6 F -0.120 7.120 7 C -0.187 4.187 8 C -0.081 4.081 9 C 0.048 3.952 10 N -0.333 5.333 11 C 0.397 3.603 12 O -0.465 6.465 13 N -0.361 5.361 14 C 0.149 3.851 15 H 0.068 0.932 16 C -0.221 4.221 17 C -0.574 4.574 18 H 0.098 0.902 19 C -0.125 4.125 20 N -0.529 5.529 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.186 1.186 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.244 0.756 32 H 0.227 0.773 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.218 10.926 8.316 20.497 hybrid contribution -0.046 0.080 0.152 0.178 sum -15.264 11.007 8.468 20.636 Atomic orbital electron populations 1.23090 0.78060 1.04197 1.01415 1.86089 1.21613 1.25807 1.88822 1.18448 0.90274 0.84511 0.99434 1.20850 1.00690 0.90678 1.12538 1.17311 0.89156 0.81387 1.03276 1.91478 1.77296 1.49225 1.94031 1.20990 0.91415 1.00058 1.06188 1.21174 1.02081 0.88827 0.96000 1.16893 0.86174 0.87271 1.04827 1.42578 1.21340 1.13798 1.55589 1.16085 0.79801 0.85144 0.79242 1.90853 1.69825 1.33617 1.52250 1.45448 1.23946 1.08963 1.57723 1.19042 0.77509 0.98266 0.90257 0.93208 1.22480 0.99545 0.99268 1.00759 1.21026 1.07256 0.92538 1.36531 0.90176 1.24815 0.97569 0.95499 0.94613 1.69865 1.26816 1.18850 1.37383 0.86869 0.81589 0.82992 0.77007 1.20282 1.22159 1.18568 0.92489 0.87957 0.92580 0.84138 0.84370 0.82116 0.75620 0.77294 0.93403 0.94442 0.92825 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.51 10.04 -19.68 -0.20 -3.71 16 3 C 0.12 1.53 6.70 -39.09 -0.26 1.27 16 4 C -0.23 -2.57 9.01 -39.40 -0.36 -2.93 16 5 C 0.11 1.33 7.30 -39.42 -0.29 1.04 16 6 F -0.14 -1.71 17.26 2.25 0.04 -1.68 16 7 C -0.17 -2.08 10.02 -39.51 -0.40 -2.48 16 8 C -0.06 -0.87 8.70 -39.43 -0.34 -1.21 16 9 C 0.15 2.11 6.33 -83.44 -0.53 1.59 16 10 N -0.68 -10.27 5.21 -14.08 -0.07 -10.34 16 11 C 0.70 13.21 8.38 -86.92 -0.73 12.48 16 12 O -0.59 -12.90 13.42 5.28 0.07 -12.83 16 13 N -0.71 -13.90 5.07 -59.81 -0.30 -14.21 16 14 C 0.25 5.96 2.15 -69.08 -0.15 5.81 16 15 H 0.05 1.30 6.63 -51.93 -0.34 0.95 16 16 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 17 C -0.54 -14.33 9.31 -34.44 -0.32 -14.65 16 18 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 19 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 20 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 21 Si 0.89 21.57 24.37 -169.99 -4.14 17.43 16 22 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.26 -6.31 6.53 56.52 0.37 -5.95 16 25 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 28 H 0.14 1.23 6.30 -52.49 -0.33 0.90 16 29 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.16 2.56 6.19 -52.49 -0.32 2.23 16 31 H 0.41 5.04 8.57 -40.82 -0.35 4.69 16 32 H 0.39 6.73 8.56 -40.82 -0.35 6.38 16 33 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -31.65 305.58 -5.33 -36.98 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.96 Total: 8.26 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.14 Total: 0.97 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.40 Total: -50.02 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.13 Total: -16.54 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.65 -5.33 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154710333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.405 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds