Wall clock time and date at job start Tue Mar 31 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35980 * 117.00298 * 2 1 4 4 C 1.38544 * 120.06595 * 0.02562 * 3 2 1 5 5 C 1.38428 * 119.99174 * 179.97438 * 4 3 2 6 6 F 1.35100 * 119.93764 * 179.97438 * 5 4 3 7 7 C 1.38472 * 120.12589 * 0.02562 * 5 4 3 8 8 C 1.38208 * 120.13446 * 359.74905 * 7 5 4 9 9 C 1.38689 * 120.00653 * 0.50205 * 8 7 5 10 10 N 1.40284 * 120.06483 * 179.77159 * 9 8 7 11 11 C 1.34787 * 119.99857 * 325.36336 * 10 9 8 12 12 O 1.21598 * 119.99476 * 4.45342 * 11 10 9 13 13 N 1.34769 * 119.99925 * 184.45159 * 11 10 9 14 14 C 1.46500 * 120.00087 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47259 * 325.00927 * 14 13 11 16 16 C 1.53005 * 109.46681 * 85.00204 * 14 13 11 17 17 C 1.50699 * 109.47642 * 205.00271 * 14 13 11 18 18 H 1.07998 * 120.00004 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99876 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99674 * 180.02562 * 19 17 14 21 21 Si 1.86799 * 120.00240 * 359.97438 * 19 17 14 22 22 H 1.48493 * 109.47152 * 90.00358 * 21 19 17 23 23 H 1.48499 * 109.46896 * 210.00104 * 21 19 17 24 24 H 1.48499 * 109.47276 * 330.00095 * 21 19 17 25 25 H 1.08997 * 109.47113 * 59.99958 * 1 2 3 26 26 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46716 * 300.00171 * 1 2 3 28 28 H 1.07999 * 120.00633 * 359.96055 * 4 3 2 29 29 H 1.07997 * 119.93206 * 179.97438 * 7 5 4 30 30 H 1.07997 * 119.99671 * 180.25506 * 8 7 5 31 31 H 0.97000 * 120.00467 * 145.63062 * 10 9 8 32 32 H 0.97001 * 120.00373 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.46835 * 180.02562 * 16 14 13 34 34 H 1.09005 * 109.47243 * 300.00128 * 16 14 13 35 35 H 1.09001 * 109.47124 * 60.00211 * 16 14 13 36 36 H 0.97005 * 120.00151 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2932 2.3744 0.0005 5 6 1.9234 3.6069 0.0011 6 9 1.1878 4.7402 0.0011 7 6 3.3061 3.6806 0.0005 8 6 4.0626 2.5239 0.0047 9 6 3.4371 1.2861 -0.0011 10 7 4.2037 0.1113 -0.0017 11 6 5.3787 0.0736 -0.6611 12 8 5.8131 1.0803 -1.1869 13 7 6.0719 -1.0796 -0.7374 14 6 7.3487 -1.1206 -1.4546 15 1 7.3050 -0.4503 -2.3129 16 6 8.4741 -0.6769 -0.5178 17 6 7.6141 -2.5265 -1.9280 18 1 6.9026 -3.3109 -1.7163 19 6 8.7652 -2.8112 -2.6314 20 7 8.9965 -4.0380 -3.0450 21 14 9.9955 -1.4543 -2.9982 22 1 10.9862 -1.3730 -1.8951 23 1 10.6969 -1.7534 -4.2725 24 1 9.2813 -0.1579 -3.1188 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2147 2.3193 0.0003 29 1 3.7945 4.6439 0.0005 30 1 5.1408 2.5839 0.0084 31 1 3.8864 -0.6752 0.4691 32 1 5.7251 -1.8826 -0.3182 33 1 9.4241 -0.7070 -1.0515 34 1 8.2822 0.3400 -0.1754 35 1 8.5178 -1.3472 0.3406 36 1 9.8062 -4.2384 -3.5402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154710333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:02 Heat of formation + Delta-G solvation = -97.218038 kcal Electronic energy + Delta-G solvation = -21761.416995 eV Core-core repulsion = 18160.240695 eV Total energy + Delta-G solvation = -3601.176300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.91855 -41.86608 -40.56715 -38.35704 -36.94449 -35.60645 -34.38812 -31.93925 -31.39928 -29.86594 -28.05026 -27.19537 -24.50338 -23.59410 -22.73808 -21.61148 -20.04069 -19.55585 -18.75083 -18.24629 -17.74450 -17.15357 -16.97639 -16.70852 -16.35428 -16.20294 -15.99187 -15.57118 -15.24353 -15.00498 -14.89825 -14.10853 -14.08599 -13.87304 -13.64988 -13.54025 -13.16703 -12.75497 -12.57133 -12.47006 -12.12287 -11.99179 -11.61452 -11.35823 -11.25139 -11.04887 -10.85460 -9.98268 -9.73791 -8.81454 -8.36255 -6.42344 0.02258 0.20249 1.30470 1.38858 1.48335 1.64292 2.06903 2.18354 2.28666 2.60894 3.00370 3.20348 3.30293 3.69127 3.94835 4.04071 4.31663 4.36196 4.42246 4.48641 4.58211 4.68151 4.73350 4.77010 4.92871 4.99099 5.05515 5.18670 5.31805 5.41282 5.47641 5.63706 5.70862 5.94391 6.27373 6.29038 6.59996 7.10751 7.23738 7.57908 8.78990 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.003928 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.110048 B = 7127.322944 C = 7862.702943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.129 3.871 4 C -0.219 4.219 5 C 0.110 3.890 6 F -0.139 7.139 7 C -0.169 4.169 8 C -0.072 4.072 9 C 0.116 3.884 10 N -0.669 5.669 11 C 0.699 3.301 12 O -0.619 6.619 13 N -0.709 5.709 14 C 0.260 3.740 15 H 0.025 0.975 16 C -0.155 4.155 17 C -0.534 4.534 18 H 0.057 0.943 19 C 0.030 3.970 20 N -0.934 5.934 21 Si 0.939 3.061 22 H -0.258 1.258 23 H -0.294 1.294 24 H -0.261 1.261 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.073 0.927 28 H 0.170 0.830 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.421 0.579 32 H 0.405 0.595 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 11.587 9.837 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.080 3.920 4 C -0.239 4.239 5 C 0.090 3.910 6 F -0.118 7.118 7 C -0.188 4.188 8 C -0.093 4.093 9 C 0.020 3.980 10 N -0.318 5.318 11 C 0.399 3.601 12 O -0.499 6.499 13 N -0.362 5.362 14 C 0.155 3.845 15 H 0.043 0.957 16 C -0.214 4.214 17 C -0.572 4.572 18 H 0.075 0.925 19 C -0.170 4.170 20 N -0.573 5.573 21 Si 0.767 3.233 22 H -0.184 1.184 23 H -0.221 1.221 24 H -0.185 1.185 25 H 0.083 0.917 26 H 0.139 0.861 27 H 0.092 0.908 28 H 0.188 0.812 29 H 0.172 0.828 30 H 0.159 0.841 31 H 0.259 0.741 32 H 0.241 0.759 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.762 12.112 9.249 22.654 hybrid contribution 0.203 -0.294 -0.097 0.371 sum -16.559 11.817 9.152 22.307 Atomic orbital electron populations 1.23442 0.75741 1.05975 1.02658 1.86085 1.23989 1.25162 1.88485 1.18403 0.89584 0.85513 0.98467 1.21107 1.02094 0.89700 1.11019 1.17392 0.89043 0.81812 1.02723 1.91490 1.77135 1.49177 1.93951 1.21103 0.91787 1.00126 1.05803 1.21041 1.01374 0.89730 0.97133 1.17115 0.87185 0.86838 1.06892 1.42267 1.20017 1.14724 1.54752 1.16099 0.80569 0.84247 0.79175 1.90834 1.70891 1.34572 1.53642 1.45139 1.23228 1.09968 1.57825 1.18679 0.79857 0.95546 0.90430 0.95720 1.22364 0.98269 1.00186 1.00549 1.21241 1.06478 0.93535 1.35934 0.92527 1.25538 0.99494 0.97322 0.94642 1.69974 1.27772 1.20755 1.38791 0.85997 0.79779 0.80261 0.77297 1.18402 1.22108 1.18537 0.91661 0.86117 0.90808 0.81244 0.82817 0.84070 0.74146 0.75929 0.94013 0.93313 0.91631 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.57 10.04 -93.32 -0.94 -7.51 16 3 C 0.13 2.99 6.70 22.59 0.15 3.14 16 4 C -0.22 -4.34 9.01 22.39 0.20 -4.14 16 5 C 0.11 2.44 7.30 22.37 0.16 2.61 16 6 F -0.14 -3.01 17.26 44.97 0.78 -2.23 16 7 C -0.17 -4.01 10.02 22.32 0.22 -3.79 16 8 C -0.07 -2.06 8.70 22.37 0.19 -1.87 16 9 C 0.12 3.26 6.33 38.14 0.24 3.51 16 10 N -0.67 -19.63 5.21 -316.72 -1.65 -21.28 16 11 C 0.70 26.36 8.38 179.05 1.50 27.86 16 12 O -0.62 -27.38 13.42 -4.02 -0.05 -27.44 16 13 N -0.71 -27.65 5.07 -461.40 -2.34 -29.99 16 14 C 0.26 12.22 2.15 44.25 0.10 12.31 16 15 H 0.02 1.30 6.63 -2.39 -0.02 1.29 16 16 C -0.16 -6.63 8.96 71.98 0.65 -5.98 16 17 C -0.53 -28.85 9.31 25.60 0.24 -28.62 16 18 H 0.06 3.26 7.98 -2.91 -0.02 3.23 16 19 C 0.03 1.67 5.45 84.65 0.46 2.13 16 20 N -0.93 -55.68 13.96 21.45 0.30 -55.38 16 21 Si 0.94 44.30 24.37 68.60 1.67 45.98 16 22 H -0.26 -11.39 6.87 99.48 0.68 -10.71 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.26 -12.21 6.53 99.48 0.65 -11.56 16 25 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 26 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 28 H 0.17 2.30 6.30 -2.91 -0.02 2.28 16 29 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.14 4.60 6.19 -2.91 -0.02 4.58 16 31 H 0.42 9.97 8.57 -92.71 -0.79 9.18 16 32 H 0.41 13.73 8.56 -92.71 -0.79 12.94 16 33 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 34 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -67.91 305.58 2.47 -65.44 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.52 Total: 23.96 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.23 Total: 8.46 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -3.69 Total: -106.65 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.99 Total: -34.95 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.98 kcal Total: -67.91 2.47 -65.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154710333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.781 kcal (2) G-P(sol) polarization free energy of solvation -67.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds