Wall clock time and date at job start Tue Mar 31 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36031 * 116.99773 * 2 1 4 4 C 1.38640 * 119.99572 * 0.02562 * 3 2 1 5 5 C 1.38139 * 120.03998 * 179.97438 * 4 3 2 6 6 C 1.38839 * 120.02260 * 0.04639 * 5 4 3 7 7 N 1.40148 * 120.00336 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00268 * 35.09065 * 7 6 5 9 9 O 1.21585 * 119.99726 * 355.38053 * 8 7 6 10 10 N 1.34779 * 119.99880 * 175.38714 * 8 7 6 11 11 C 1.46497 * 119.99929 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47005 * 325.00015 * 11 10 8 13 13 C 1.53001 * 109.46911 * 84.99710 * 11 10 8 14 14 C 1.50704 * 109.46991 * 204.99616 * 11 10 8 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 11 10 16 16 C 1.37874 * 119.99559 * 180.27624 * 14 11 10 17 17 N 1.31512 * 120.00405 * 359.72253 * 16 14 11 18 18 Si 1.86805 * 119.99631 * 179.72517 * 16 14 11 19 19 H 1.48499 * 109.47183 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47191 * 119.99742 * 18 16 14 21 21 H 1.48497 * 109.47111 * 240.00031 * 18 16 14 22 22 C 1.38815 * 119.98911 * 0.22688 * 6 5 4 23 23 C 1.38284 * 119.95854 * 359.47373 * 22 6 5 24 24 F 1.35099 * 120.01356 * 180.27519 * 23 22 6 25 25 H 1.08999 * 109.47357 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46941 * 300.00258 * 1 2 3 27 27 H 1.08999 * 109.47318 * 59.99641 * 1 2 3 28 28 H 1.08004 * 119.98231 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.98777 * 180.02562 * 5 4 3 30 30 H 0.97002 * 119.99347 * 215.09513 * 7 6 5 31 31 H 0.97004 * 119.99716 * 359.97438 * 10 8 7 32 32 H 1.09005 * 109.46690 * 179.97438 * 13 11 10 33 33 H 1.08999 * 109.47085 * 299.99305 * 13 11 10 34 34 H 1.08997 * 109.47036 * 60.00325 * 13 11 10 35 35 H 0.96997 * 119.99985 * 179.97438 * 17 16 14 36 36 H 1.07994 * 120.02464 * 179.72136 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2913 2.3747 0.0005 5 6 1.9174 3.6061 0.0011 6 6 3.3038 3.6804 0.0001 7 7 3.9386 4.9299 0.0001 8 6 3.3930 5.9630 0.6718 9 8 2.3090 5.8352 1.2075 10 7 4.0489 7.1379 0.7496 11 6 3.4555 8.2611 1.4793 12 1 2.3731 8.2458 1.3520 13 6 3.7958 8.1401 2.9661 14 6 4.0064 9.5566 0.9416 15 1 4.7263 9.5445 0.1365 16 6 3.5954 10.7571 1.4809 17 7 2.7185 10.7719 2.4609 18 14 4.2842 12.3627 0.8196 19 1 5.2470 12.0752 -0.2738 20 1 3.1744 13.1987 0.2954 21 1 4.9790 13.0904 1.9117 22 6 4.0610 2.5170 -0.0062 23 6 3.4336 1.2847 -0.0004 24 9 4.1695 0.1517 -0.0009 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2127 2.3177 0.0005 29 1 1.3283 4.5112 0.0019 30 1 4.7708 5.0510 -0.4835 31 1 4.9138 7.2397 0.3225 32 1 3.3547 8.9762 3.5089 33 1 3.3972 7.2032 3.3550 34 1 4.8782 8.1554 3.0934 35 1 2.4297 11.6164 2.8405 36 1 5.1395 2.5741 -0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156167607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:45 Heat of formation + Delta-G solvation = -81.947369 kcal Electronic energy + Delta-G solvation = -21453.459274 eV Core-core repulsion = 17852.945160 eV Total energy + Delta-G solvation = -3600.514114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.79362 -40.43765 -39.43212 -37.45273 -34.98391 -34.00205 -32.41370 -30.73729 -29.63431 -28.41445 -26.97421 -25.29290 -23.14643 -22.65834 -21.14186 -19.92736 -18.51096 -18.31586 -17.72665 -16.62019 -16.23139 -16.14797 -15.50684 -15.11943 -15.01618 -14.85159 -14.55792 -14.33156 -14.19866 -13.36329 -12.95939 -12.74252 -12.46673 -12.43047 -12.03051 -11.82945 -11.47613 -11.24794 -11.11790 -11.00350 -10.77546 -10.34809 -10.27806 -9.79755 -9.45729 -9.08788 -8.90253 -8.61322 -8.08712 -7.61732 -6.17056 -4.26438 1.10185 1.23544 2.96459 3.12389 3.20944 3.29245 3.31823 3.44291 3.86909 4.22507 4.29144 4.65994 4.82419 4.86837 4.97904 5.12508 5.15830 5.18846 5.27996 5.37940 5.58305 5.91227 6.20403 6.29905 6.42014 6.75054 6.87211 6.93699 7.06319 7.17025 7.23451 7.39285 7.57791 7.77514 7.93655 8.10608 8.66696 8.78394 9.15385 9.41865 10.88988 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.038964 B = 0.003187 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.447676 B = 8782.455830 C = 9119.369486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.068 3.932 4 C -0.160 4.160 5 C -0.090 4.090 6 C 0.175 3.825 7 N -0.694 5.694 8 C 0.693 3.307 9 O -0.582 6.582 10 N -0.717 5.717 11 C 0.280 3.720 12 H 0.050 0.950 13 C -0.149 4.149 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.283 1.283 22 C -0.154 4.154 23 C 0.086 3.914 24 F -0.134 7.134 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.404 0.596 31 H 0.387 0.613 32 H 0.091 0.909 33 H 0.015 0.985 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -16.702 -6.201 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.021 3.979 4 C -0.180 4.180 5 C -0.110 4.110 6 C 0.078 3.922 7 N -0.342 5.342 8 C 0.394 3.606 9 O -0.460 6.460 10 N -0.368 5.368 11 C 0.178 3.822 12 H 0.068 0.932 13 C -0.208 4.208 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.176 4.176 23 C 0.066 3.934 24 F -0.113 7.113 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.172 0.828 30 H 0.239 0.761 31 H 0.219 0.781 32 H 0.110 0.890 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.181 -16.761 -5.528 17.689 hybrid contribution 1.128 0.961 -0.656 1.620 sum -0.053 -15.800 -6.184 16.967 Atomic orbital electron populations 1.23076 0.78216 1.03909 1.01604 1.86104 1.21471 1.25905 1.89326 1.18906 0.90670 0.85566 1.02714 1.21054 1.00283 0.90905 1.05717 1.21350 0.93412 0.98591 0.97672 1.17119 0.91375 0.83855 0.99808 1.42802 1.28138 1.08361 1.54944 1.16141 0.84518 0.80554 0.79403 1.90864 1.20864 1.82274 1.52001 1.45881 1.22741 1.11190 1.56968 1.18709 0.95011 0.80696 0.87758 0.93200 1.22112 0.98883 1.00299 0.99465 1.21242 1.26624 0.90172 1.19252 0.91983 1.24881 0.94814 0.99236 0.94763 1.69909 1.30782 1.26619 1.24678 0.86375 0.78833 0.82973 0.78796 1.19744 1.20846 1.20855 1.20607 1.00728 0.89353 1.06928 1.16485 0.85741 0.82310 1.08890 1.91480 1.76633 1.48806 1.94370 0.88246 0.92412 0.92519 0.84316 0.82774 0.76054 0.78059 0.89034 0.96546 0.95481 0.92558 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.87 10.36 -19.84 -0.21 -4.08 16 3 C 0.07 0.90 6.69 -39.19 -0.26 0.64 16 4 C -0.16 -2.03 9.03 -39.47 -0.36 -2.39 16 5 C -0.09 -1.34 8.69 -39.40 -0.34 -1.68 16 6 C 0.18 2.52 6.30 -83.62 -0.53 2.00 16 7 N -0.69 -10.08 5.35 -14.19 -0.08 -10.15 16 8 C 0.69 13.40 8.37 -86.92 -0.73 12.67 16 9 O -0.58 -13.36 13.44 5.29 0.07 -13.29 16 10 N -0.72 -14.27 5.07 -59.81 -0.30 -14.58 16 11 C 0.28 6.92 2.56 -69.08 -0.18 6.74 16 12 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 14 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.88 -24.37 11.31 55.43 0.63 -23.75 16 18 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C -0.15 -1.95 9.94 -39.35 -0.39 -2.34 16 23 C 0.09 1.17 7.31 -39.32 -0.29 0.89 16 24 F -0.13 -1.88 17.11 2.25 0.04 -1.84 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.14 1.41 6.29 -52.48 -0.33 1.08 16 29 H 0.15 2.60 6.22 -52.49 -0.33 2.27 16 30 H 0.40 4.41 8.84 -40.82 -0.36 4.05 16 31 H 0.39 6.51 8.56 -40.82 -0.35 6.16 16 32 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -31.07 312.88 -6.39 -37.45 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.10 Total: 8.33 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.13 Total: 2.01 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.25 Total: -48.48 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.13 Total: -17.37 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.07 -6.39 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156167607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.493 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds