Wall clock time and date at job start Tue Mar 31 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36031 * 116.99773 * 2 1 4 4 C 1.38640 * 119.99572 * 0.02562 * 3 2 1 5 5 C 1.38139 * 120.03998 * 179.97438 * 4 3 2 6 6 C 1.38839 * 120.02260 * 0.04639 * 5 4 3 7 7 N 1.40148 * 120.00336 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00268 * 35.09065 * 7 6 5 9 9 O 1.21585 * 119.99726 * 355.38053 * 8 7 6 10 10 N 1.34779 * 119.99880 * 175.38714 * 8 7 6 11 11 C 1.46497 * 119.99929 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47005 * 325.00015 * 11 10 8 13 13 C 1.53001 * 109.46911 * 84.99710 * 11 10 8 14 14 C 1.50704 * 109.46991 * 204.99616 * 11 10 8 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 11 10 16 16 C 1.37874 * 119.99559 * 180.27624 * 14 11 10 17 17 N 1.31512 * 120.00405 * 359.72253 * 16 14 11 18 18 Si 1.86805 * 119.99631 * 179.72517 * 16 14 11 19 19 H 1.48499 * 109.47183 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47191 * 119.99742 * 18 16 14 21 21 H 1.48497 * 109.47111 * 240.00031 * 18 16 14 22 22 C 1.38815 * 119.98911 * 0.22688 * 6 5 4 23 23 C 1.38284 * 119.95854 * 359.47373 * 22 6 5 24 24 F 1.35099 * 120.01356 * 180.27519 * 23 22 6 25 25 H 1.08999 * 109.47357 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46941 * 300.00258 * 1 2 3 27 27 H 1.08999 * 109.47318 * 59.99641 * 1 2 3 28 28 H 1.08004 * 119.98231 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.98777 * 180.02562 * 5 4 3 30 30 H 0.97002 * 119.99347 * 215.09513 * 7 6 5 31 31 H 0.97004 * 119.99716 * 359.97438 * 10 8 7 32 32 H 1.09005 * 109.46690 * 179.97438 * 13 11 10 33 33 H 1.08999 * 109.47085 * 299.99305 * 13 11 10 34 34 H 1.08997 * 109.47036 * 60.00325 * 13 11 10 35 35 H 0.96997 * 119.99985 * 179.97438 * 17 16 14 36 36 H 1.07994 * 120.02464 * 179.72136 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2913 2.3747 0.0005 5 6 1.9174 3.6061 0.0011 6 6 3.3038 3.6804 0.0001 7 7 3.9386 4.9299 0.0001 8 6 3.3930 5.9630 0.6718 9 8 2.3090 5.8352 1.2075 10 7 4.0489 7.1379 0.7496 11 6 3.4555 8.2611 1.4793 12 1 2.3731 8.2458 1.3520 13 6 3.7958 8.1401 2.9661 14 6 4.0064 9.5566 0.9416 15 1 4.7263 9.5445 0.1365 16 6 3.5954 10.7571 1.4809 17 7 2.7185 10.7719 2.4609 18 14 4.2842 12.3627 0.8196 19 1 5.2470 12.0752 -0.2738 20 1 3.1744 13.1987 0.2954 21 1 4.9790 13.0904 1.9117 22 6 4.0610 2.5170 -0.0062 23 6 3.4336 1.2847 -0.0004 24 9 4.1695 0.1517 -0.0009 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2127 2.3177 0.0005 29 1 1.3283 4.5112 0.0019 30 1 4.7708 5.0510 -0.4835 31 1 4.9138 7.2397 0.3225 32 1 3.3547 8.9762 3.5089 33 1 3.3972 7.2032 3.3550 34 1 4.8782 8.1554 3.0934 35 1 2.4297 11.6164 2.8405 36 1 5.1395 2.5741 -0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156167607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:45 Heat of formation + Delta-G solvation = -103.134918 kcal Electronic energy + Delta-G solvation = -21454.378035 eV Core-core repulsion = 17852.945160 eV Total energy + Delta-G solvation = -3601.432875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85900 -41.69033 -40.60872 -38.63223 -36.73816 -35.37017 -34.25764 -31.78693 -31.15843 -29.70475 -27.88636 -27.31166 -24.40376 -23.78974 -22.64665 -21.57688 -19.93141 -19.46656 -18.84212 -18.05617 -17.59669 -17.15022 -17.06573 -16.54913 -16.16677 -16.03527 -15.85873 -15.73881 -15.21590 -15.03726 -14.40081 -14.09270 -13.84621 -13.72278 -13.41321 -12.98279 -12.89557 -12.83662 -12.72027 -12.36508 -12.26784 -12.17040 -12.07761 -11.21067 -11.07474 -10.86242 -10.59786 -9.97616 -9.79080 -8.76505 -8.16425 -6.33351 0.06360 0.13928 1.46250 1.47229 1.58542 1.68928 2.10971 2.22646 2.42929 2.61024 3.14209 3.18042 3.43587 3.71388 3.95304 4.10233 4.36601 4.40436 4.40763 4.51698 4.73529 4.76573 4.88509 4.95199 5.10982 5.15600 5.17243 5.32019 5.42822 5.61209 5.67311 5.73510 5.85983 6.10964 6.24670 6.28256 6.74785 7.22696 7.35411 7.66762 8.90148 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.038964 B = 0.003187 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.447676 B = 8782.455830 C = 9119.369486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.072 3.928 4 C -0.156 4.156 5 C -0.105 4.105 6 C 0.154 3.846 7 N -0.672 5.672 8 C 0.694 3.306 9 O -0.622 6.622 10 N -0.713 5.713 11 C 0.289 3.711 12 H 0.003 0.997 13 C -0.135 4.135 14 C -0.545 4.545 15 H 0.075 0.925 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.972 3.028 19 H -0.259 1.259 20 H -0.285 1.285 21 H -0.280 1.280 22 C -0.136 4.136 23 C 0.072 3.928 24 F -0.137 7.137 25 H 0.123 0.877 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.162 0.838 29 H 0.130 0.870 30 H 0.424 0.576 31 H 0.405 0.595 32 H 0.067 0.933 33 H 0.011 0.989 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 -17.513 -7.315 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.025 3.975 4 C -0.175 4.175 5 C -0.125 4.125 6 C 0.058 3.942 7 N -0.322 5.322 8 C 0.394 3.606 9 O -0.503 6.503 10 N -0.365 5.365 11 C 0.185 3.815 12 H 0.021 0.979 13 C -0.194 4.194 14 C -0.583 4.583 15 H 0.093 0.907 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.797 3.203 19 H -0.183 1.183 20 H -0.211 1.211 21 H -0.206 1.206 22 C -0.157 4.157 23 C 0.051 3.949 24 F -0.116 7.116 25 H 0.141 0.859 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.179 0.821 29 H 0.148 0.852 30 H 0.263 0.737 31 H 0.240 0.760 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.079 -17.628 -6.689 18.854 hybrid contribution 0.654 1.049 -0.323 1.278 sum 0.733 -16.578 -7.012 18.015 Atomic orbital electron populations 1.23420 0.75952 1.05910 1.02532 1.86102 1.23854 1.25379 1.88988 1.19034 0.90831 0.86071 1.01591 1.21178 1.01443 0.89903 1.04967 1.21275 0.93854 0.98563 0.98856 1.17221 0.91416 0.84016 1.01536 1.42385 1.28511 1.07324 1.54023 1.16204 0.83967 0.81045 0.79346 1.90847 1.22702 1.83048 1.53701 1.45444 1.23432 1.10543 1.57072 1.18264 0.92587 0.82269 0.88377 0.97919 1.21934 0.99343 0.98967 0.99195 1.21569 1.26675 0.90591 1.19484 0.90686 1.25773 0.95023 1.02785 0.94941 1.70054 1.32060 1.27461 1.25961 0.85292 0.78126 0.78476 0.78387 1.18319 1.21061 1.20593 1.20721 1.01909 0.88157 1.04907 1.16695 0.86122 0.82519 1.09542 1.91473 1.76695 1.48943 1.94458 0.85856 0.91791 0.91238 0.82089 0.85210 0.73740 0.76016 0.91402 0.96974 0.94133 0.92547 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.52 10.36 -93.90 -0.97 -8.49 16 3 C 0.07 1.79 6.69 22.53 0.15 1.94 16 4 C -0.16 -3.80 9.03 22.34 0.20 -3.60 16 5 C -0.10 -3.12 8.69 22.39 0.19 -2.92 16 6 C 0.15 4.28 6.30 38.09 0.24 4.52 16 7 N -0.67 -18.76 5.35 -317.08 -1.70 -20.46 16 8 C 0.69 26.84 8.37 179.05 1.50 28.34 16 9 O -0.62 -29.42 13.44 -3.98 -0.05 -29.47 16 10 N -0.71 -28.15 5.07 -461.41 -2.34 -30.49 16 11 C 0.29 14.52 2.56 44.25 0.11 14.63 16 12 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 13 C -0.14 -6.75 9.26 71.98 0.67 -6.08 16 14 C -0.54 -27.92 8.73 25.60 0.22 -27.69 16 15 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -51.56 11.31 21.45 0.24 -51.32 16 18 Si 0.97 41.00 29.54 68.60 2.03 43.02 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 22 C -0.14 -3.16 9.94 22.42 0.22 -2.94 16 23 C 0.07 1.83 7.31 22.44 0.16 1.99 16 24 F -0.14 -3.60 17.11 44.97 0.77 -2.83 16 25 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 27 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 28 H 0.16 3.05 6.29 -2.91 -0.02 3.03 16 29 H 0.13 4.55 6.22 -2.91 -0.02 4.54 16 30 H 0.42 8.32 8.84 -92.71 -0.82 7.50 16 31 H 0.40 13.01 8.56 -92.71 -0.79 12.22 16 32 H 0.07 3.71 6.06 -2.38 -0.01 3.69 16 33 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -67.97 312.88 2.74 -65.23 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.47 Total: 24.06 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.24 Total: 10.75 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.79 Total: -102.27 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.03 Total: -37.96 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.77 Total: -2.83 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -67.97 2.74 -65.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156167607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.901 kcal (2) G-P(sol) polarization free energy of solvation -67.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds