Wall clock time and date at job start Tue Mar 31 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99701 * 2 1 4 4 C 1.38764 * 120.00711 * 359.97438 * 3 2 1 5 5 C 1.38394 * 120.05707 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.96074 * 179.97438 * 5 4 3 7 7 C 1.38387 * 120.07459 * 359.97438 * 5 4 3 8 8 C 1.38843 * 120.01747 * 0.02562 * 7 5 4 9 9 N 1.39932 * 120.03082 * 180.02562 * 8 7 5 10 10 C 1.34778 * 120.00048 * 213.29684 * 9 8 7 11 11 O 1.21591 * 119.99860 * 5.31407 * 10 9 8 12 12 N 1.34776 * 120.00259 * 185.31609 * 10 9 8 13 13 C 1.46499 * 120.00228 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46905 * 324.99917 * 13 12 10 15 15 C 1.52995 * 109.47211 * 84.99911 * 13 12 10 16 16 C 1.50703 * 109.47205 * 204.99891 * 13 12 10 17 17 H 1.08001 * 119.99720 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99684 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00187 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99672 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47119 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47093 * 119.99883 * 20 18 16 23 23 H 1.48498 * 109.47462 * 240.00002 * 20 18 16 24 24 C 1.38602 * 120.00565 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46755 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47090 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47052 * 60.00268 * 1 2 3 28 28 H 1.07996 * 119.97007 * 359.75645 * 4 3 2 29 29 H 1.08003 * 119.99206 * 180.02562 * 7 5 4 30 30 H 0.97000 * 120.00517 * 33.29402 * 9 8 7 31 31 H 0.96999 * 120.00099 * 0.02562 * 12 10 9 32 32 H 1.08993 * 109.47548 * 180.02562 * 15 13 12 33 33 H 1.09003 * 109.47243 * 299.99981 * 15 13 12 34 34 H 1.09000 * 109.47182 * 60.00175 * 15 13 12 35 35 H 0.97008 * 119.99958 * 180.02562 * 19 18 16 36 36 H 1.07992 * 120.03656 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3748 -0.0005 5 6 1.9174 3.6084 -0.0011 6 9 1.1797 4.7403 -0.0021 7 6 3.2992 3.6839 -0.0005 8 6 4.0583 2.5214 0.0000 9 7 5.4556 2.5974 0.0011 10 6 6.1820 1.6599 -0.6392 11 8 5.6241 0.8037 -1.2980 12 7 7.5267 1.6715 -0.5491 13 6 8.3162 0.6521 -1.2446 14 1 7.7752 -0.2942 -1.2371 15 6 8.5557 1.0911 -2.6905 16 6 9.6404 0.4793 -0.5462 17 1 9.8706 1.0695 0.3284 18 6 10.5575 -0.4330 -1.0234 19 7 10.2769 -1.1520 -2.0882 20 14 12.1986 -0.6477 -0.1573 21 1 12.2680 0.2718 1.0067 22 1 12.3309 -2.0503 0.3119 23 1 13.3014 -0.3355 -1.1017 24 6 3.4300 1.2837 -0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2118 2.3178 -0.0049 29 1 3.7872 4.6474 -0.0005 30 1 5.9014 3.3249 0.4626 31 1 7.9717 2.3543 -0.0233 32 1 9.1427 0.3325 -3.2081 33 1 7.5979 1.2161 -3.1957 34 1 9.0967 2.0374 -2.6981 35 1 10.9220 -1.7941 -2.4237 36 1 4.0189 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162834150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:48 Heat of formation + Delta-G solvation = -83.530391 kcal Electronic energy + Delta-G solvation = -21509.445806 eV Core-core repulsion = 17908.863047 eV Total energy + Delta-G solvation = -3600.582759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99773 -40.51163 -39.43819 -37.37127 -35.00589 -34.05267 -32.42851 -30.37289 -29.78628 -28.32157 -27.25834 -25.28022 -23.22847 -22.55621 -21.12291 -19.92567 -18.69317 -18.39783 -16.97173 -16.37144 -16.19088 -16.03017 -15.83715 -15.56527 -15.43743 -14.96110 -14.57705 -14.38552 -14.06147 -13.36612 -13.01751 -12.60108 -12.46087 -12.40935 -11.87755 -11.78163 -11.50360 -11.29488 -11.10897 -10.98099 -10.77677 -10.33158 -10.26486 -9.97378 -9.52581 -9.06995 -8.60239 -8.30982 -8.24315 -7.88093 -6.15244 -4.24623 1.14758 1.24441 2.84415 3.22386 3.26059 3.31035 3.33864 3.43994 3.89715 4.19760 4.30340 4.76491 4.86977 4.91429 4.98745 5.01005 5.09065 5.17712 5.23144 5.31150 5.78165 5.95308 6.16279 6.27982 6.38766 6.75907 6.90067 6.94448 7.06589 7.16734 7.30235 7.39933 7.59247 7.78234 7.94129 8.11928 8.66996 8.79095 9.15060 9.43392 10.90845 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.028287 B = 0.003489 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.620336 B = 8022.941673 C = 8557.803063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.176 3.824 4 C -0.272 4.272 5 C 0.156 3.844 6 F -0.138 7.138 7 C -0.228 4.228 8 C 0.251 3.749 9 N -0.692 5.692 10 C 0.691 3.309 11 O -0.575 6.575 12 N -0.716 5.716 13 C 0.279 3.721 14 H 0.051 0.949 15 C -0.149 4.149 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.165 4.165 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.407 0.593 31 H 0.387 0.613 32 H 0.091 0.909 33 H 0.016 0.984 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.914 8.173 5.664 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.129 3.871 4 C -0.293 4.293 5 C 0.136 3.864 6 F -0.117 7.117 7 C -0.250 4.250 8 C 0.153 3.847 9 N -0.340 5.340 10 C 0.391 3.609 11 O -0.451 6.451 12 N -0.367 5.367 13 C 0.177 3.823 14 H 0.069 0.931 15 C -0.207 4.207 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.519 5.519 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.187 4.187 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.242 0.758 31 H 0.220 0.780 32 H 0.110 0.890 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.121 7.006 4.903 18.248 hybrid contribution 0.951 0.978 0.811 1.587 sum -15.170 7.984 5.714 18.069 Atomic orbital electron populations 1.23099 0.78346 1.04088 1.01403 1.86157 1.21367 1.26225 1.88170 1.18396 0.91487 0.83637 0.93570 1.20978 1.00829 0.91094 1.16398 1.16852 0.88329 0.81386 0.99855 1.91491 1.76992 1.49426 1.93770 1.20601 0.91955 0.98758 1.13719 1.16730 0.82475 0.91929 0.93562 1.42895 1.03646 1.30456 1.57002 1.16171 0.82828 0.81690 0.80166 1.90925 1.70526 1.38687 1.44993 1.45895 1.02961 1.34310 1.53494 1.18732 0.89183 0.85777 0.88558 0.93120 1.22109 0.98610 1.00915 0.99110 1.21229 1.00097 1.22932 1.13020 0.91969 1.24879 0.98648 0.95206 0.94946 1.69913 1.35681 1.23875 1.22473 0.86372 0.83087 0.78070 0.79427 1.19749 1.20844 1.20867 1.20501 0.91435 0.99010 1.07732 0.88075 0.92565 0.92498 0.84481 0.84429 0.75753 0.78041 0.89036 0.96535 0.95470 0.92557 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.11 10.49 -19.43 -0.20 -4.32 16 3 C 0.18 2.50 6.68 -39.25 -0.26 2.24 16 4 C -0.27 -3.33 9.01 -39.33 -0.35 -3.68 16 5 C 0.16 1.96 7.29 -39.47 -0.29 1.67 16 6 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 7 C -0.23 -2.89 9.94 -39.30 -0.39 -3.28 16 8 C 0.25 3.75 6.28 -83.72 -0.53 3.22 16 9 N -0.69 -10.28 5.35 -14.25 -0.08 -10.36 16 10 C 0.69 13.64 8.27 -86.92 -0.72 12.92 16 11 O -0.57 -13.66 13.69 5.29 0.07 -13.59 16 12 N -0.72 -14.41 5.07 -59.81 -0.30 -14.71 16 13 C 0.28 6.97 2.56 -69.08 -0.18 6.79 16 14 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 15 C -0.15 -3.66 9.26 37.15 0.34 -3.32 16 16 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 20 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.17 -2.70 8.59 -39.24 -0.34 -3.04 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 28 H 0.14 1.33 6.29 -52.49 -0.33 1.00 16 29 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.41 4.47 8.83 -40.82 -0.36 4.11 16 31 H 0.39 6.55 8.56 -40.82 -0.35 6.20 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.15 2.94 6.41 -52.49 -0.34 2.60 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -31.14 313.35 -6.37 -37.51 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.11 Total: 8.74 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.11 Total: 2.25 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.25 Total: -48.97 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.13 Total: -17.90 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.14 -6.37 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162834150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.024 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds