Wall clock time and date at job start Tue Mar 31 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35892 * 116.99321 * 2 1 4 4 C 1.38763 * 120.01364 * 0.02562 * 3 2 1 5 5 C 1.38395 * 120.06026 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.96016 * 180.02562 * 5 4 3 7 7 C 1.38390 * 120.07755 * 359.97438 * 5 4 3 8 8 C 1.38850 * 120.01259 * 359.97438 * 7 5 4 9 9 N 1.39928 * 120.03029 * 179.97438 * 8 7 5 10 10 C 1.34776 * 119.99881 * 144.92184 * 9 8 7 11 11 O 1.21581 * 120.00049 * 4.61776 * 10 9 8 12 12 N 1.34785 * 119.99885 * 184.61990 * 10 9 8 13 13 C 1.46497 * 119.99899 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47307 * 34.99578 * 13 12 10 15 15 C 1.52997 * 109.47211 * 274.99784 * 13 12 10 16 16 C 1.50696 * 109.47158 * 154.99515 * 13 12 10 17 17 H 1.07999 * 119.99933 * 0.02562 * 16 13 12 18 18 C 1.37880 * 120.00336 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99607 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00342 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47022 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47439 * 119.99777 * 20 18 16 23 23 H 1.48501 * 109.47233 * 240.00392 * 20 18 16 24 24 C 1.38605 * 120.00601 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47301 * 60.00394 * 1 2 3 26 26 H 1.09004 * 109.46588 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47446 * 299.99615 * 1 2 3 28 28 H 1.07999 * 119.96810 * 359.73800 * 4 3 2 29 29 H 1.07991 * 119.99804 * 180.02562 * 7 5 4 30 30 H 0.97002 * 119.99949 * 324.93241 * 9 8 7 31 31 H 0.96999 * 119.99668 * 359.97438 * 12 10 9 32 32 H 1.09001 * 109.46942 * 60.00013 * 15 13 12 33 33 H 1.08999 * 109.47024 * 179.97438 * 15 13 12 34 34 H 1.08997 * 109.47108 * 300.00113 * 15 13 12 35 35 H 0.96999 * 119.99421 * 180.02562 * 19 18 16 36 36 H 1.08004 * 120.03507 * 359.95706 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 1.2902 2.3747 0.0005 5 6 1.9174 3.6084 0.0000 6 9 1.1797 4.7403 0.0011 7 6 3.2992 3.6840 -0.0005 8 6 4.0584 2.5214 0.0000 9 7 5.4556 2.5974 -0.0011 10 6 6.1808 1.6809 0.6700 11 8 5.6265 0.7408 1.2061 12 7 7.5206 1.8063 0.7470 13 6 8.3088 0.8104 1.4769 14 1 7.8576 -0.1738 1.3507 15 6 8.3367 1.1717 2.9634 16 6 9.7161 0.7905 0.9383 17 1 9.9955 1.4538 0.1331 18 6 10.6473 -0.0737 1.4742 19 7 10.3072 -0.8810 2.4551 20 14 12.3919 -0.0978 0.8071 21 1 12.5175 0.8992 -0.2864 22 1 13.3431 0.2404 1.8961 23 1 12.7022 -1.4515 0.2813 24 6 3.4300 1.2837 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2117 2.3178 -0.0033 29 1 3.7872 4.6474 -0.0005 30 1 5.9022 3.3099 -0.4847 31 1 7.9628 2.5561 0.3190 32 1 7.3187 1.1860 3.3529 33 1 8.9228 0.4303 3.5065 34 1 8.7879 2.1558 3.0897 35 1 10.9624 -1.4887 2.8323 36 1 4.0190 0.3784 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162834264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:49 Heat of formation + Delta-G solvation = -82.921882 kcal Electronic energy + Delta-G solvation = -21508.750879 eV Core-core repulsion = 17908.194507 eV Total energy + Delta-G solvation = -3600.556372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99509 -40.50895 -39.43641 -37.36676 -35.00594 -34.05108 -32.43022 -30.36387 -29.78566 -28.31849 -27.25228 -25.27867 -23.20967 -22.55083 -21.13425 -19.92996 -18.68927 -18.39643 -16.97037 -16.37608 -16.19844 -16.02870 -15.83417 -15.52966 -15.43448 -14.91465 -14.60537 -14.40029 -14.12016 -13.35818 -13.01573 -12.57297 -12.46945 -12.40273 -11.87522 -11.77078 -11.49833 -11.29758 -11.10899 -10.98128 -10.76564 -10.33257 -10.26266 -9.95896 -9.47330 -9.06951 -8.60305 -8.30389 -8.26678 -7.87952 -6.15224 -4.24573 1.14847 1.24438 2.85017 3.22345 3.26193 3.30971 3.33710 3.45484 3.87624 4.20096 4.30353 4.76687 4.87111 4.91449 4.98612 5.01485 5.09880 5.17670 5.24351 5.31010 5.79178 5.95289 6.17197 6.30229 6.40442 6.76170 6.90786 6.94932 7.06722 7.17316 7.30841 7.40621 7.59290 7.78375 7.94488 8.12124 8.67260 8.79214 9.15445 9.43429 10.90866 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.029265 B = 0.003466 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.536409 B = 8076.219057 C = 8631.928858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.174 3.826 4 C -0.271 4.271 5 C 0.154 3.846 6 F -0.138 7.138 7 C -0.227 4.227 8 C 0.248 3.752 9 N -0.693 5.693 10 C 0.692 3.308 11 O -0.575 6.575 12 N -0.716 5.716 13 C 0.279 3.721 14 H 0.051 0.949 15 C -0.148 4.148 16 C -0.534 4.534 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.882 5.882 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.164 4.164 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.407 0.593 31 H 0.387 0.613 32 H 0.016 0.984 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.062 7.722 -6.150 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.127 3.873 4 C -0.292 4.292 5 C 0.134 3.866 6 F -0.117 7.117 7 C -0.249 4.249 8 C 0.149 3.851 9 N -0.340 5.340 10 C 0.392 3.608 11 O -0.452 6.452 12 N -0.367 5.367 13 C 0.178 3.822 14 H 0.069 0.931 15 C -0.207 4.207 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.186 4.186 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.243 0.757 31 H 0.220 0.780 32 H 0.035 0.965 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.271 6.499 -5.472 18.355 hybrid contribution 0.987 1.116 -0.667 1.632 sum -15.283 7.615 -6.140 18.146 Atomic orbital electron populations 1.23099 0.78372 1.04080 1.01394 1.86157 1.21340 1.26227 1.88178 1.18435 0.91567 0.83620 0.93677 1.20991 1.00830 0.91120 1.16230 1.16854 0.88335 0.81391 1.00015 1.91491 1.76991 1.49426 1.93787 1.20632 0.91959 0.98811 1.13459 1.16745 0.82457 0.91890 0.93958 1.42850 1.03667 1.32752 1.54772 1.16166 0.82804 0.82298 0.79532 1.90901 1.70289 1.32425 1.51601 1.45888 1.03419 1.30461 1.56903 1.18729 0.88974 0.86774 0.87764 0.93118 1.22107 0.98324 1.00856 0.99435 1.21233 0.94414 1.22321 1.19319 0.91977 1.24884 0.99066 0.94971 0.94777 1.69917 1.34773 1.22569 1.24682 0.86371 0.83799 0.77982 0.78794 1.19752 1.20873 1.20841 1.20668 0.91381 0.99306 1.07204 0.92575 0.88081 0.92509 0.84500 0.84436 0.75748 0.78046 0.96533 0.89037 0.95477 0.92561 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.10 10.49 -19.40 -0.20 -4.30 16 3 C 0.17 2.47 6.68 -39.25 -0.26 2.20 16 4 C -0.27 -3.31 9.01 -39.33 -0.35 -3.67 16 5 C 0.15 1.94 7.29 -39.47 -0.29 1.65 16 6 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 7 C -0.23 -2.87 9.94 -39.30 -0.39 -3.26 16 8 C 0.25 3.69 6.29 -83.72 -0.53 3.16 16 9 N -0.69 -10.27 5.34 -14.25 -0.08 -10.35 16 10 C 0.69 13.64 8.37 -86.91 -0.73 12.91 16 11 O -0.58 -13.61 13.44 5.29 0.07 -13.54 16 12 N -0.72 -14.41 5.07 -59.82 -0.30 -14.72 16 13 C 0.28 6.97 2.56 -69.09 -0.18 6.80 16 14 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 15 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 16 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -24.53 11.32 55.43 0.63 -23.91 16 20 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 C -0.16 -2.68 8.63 -39.24 -0.34 -3.02 16 25 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.14 1.32 6.29 -52.49 -0.33 0.99 16 29 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.41 4.48 8.84 -40.82 -0.36 4.12 16 31 H 0.39 6.56 8.56 -40.82 -0.35 6.21 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.16 3.03 6.22 -52.48 -0.33 2.70 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -31.05 313.08 -6.38 -37.43 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.10 Total: 8.85 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.13 Total: 2.17 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.25 Total: -48.97 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.13 Total: -17.84 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.05 -6.38 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162834264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.493 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds