Wall clock time and date at job start Tue Mar 31 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47099 * 119.99555 * 2 1 3 5 5 H 1.08004 * 120.00020 * 114.53044 * 4 2 1 6 6 C 1.37878 * 120.00180 * 294.53219 * 4 2 1 7 7 N 1.31505 * 119.99935 * 160.59502 * 6 4 2 8 8 Si 1.86796 * 119.99790 * 340.86338 * 6 4 2 9 9 H 1.48503 * 109.47098 * 179.72449 * 8 6 4 10 10 H 1.48501 * 109.47418 * 299.73090 * 8 6 4 11 11 H 1.48505 * 109.47038 * 59.73082 * 8 6 4 12 12 N 1.46904 * 109.47316 * 239.99805 * 2 1 3 13 13 C 1.46894 * 111.00027 * 306.04606 * 12 2 1 14 14 C 1.46902 * 110.99898 * 70.00014 * 12 2 1 15 15 C 1.50701 * 109.46840 * 170.00160 * 14 12 2 16 16 O 1.21280 * 120.00192 * 359.97438 * 15 14 12 17 17 N 1.34773 * 120.00007 * 180.02562 * 15 14 12 18 18 C 1.46500 * 120.00300 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47328 * 179.97438 * 18 17 15 20 20 C 1.33391 * 125.20520 * 89.99675 * 19 18 17 21 21 C 1.38421 * 114.92258 * 179.97438 * 20 19 18 22 22 C 1.33388 * 114.92061 * 0.02562 * 21 20 19 23 23 S 1.75883 * 125.20272 * 269.69499 * 19 18 17 24 24 H 1.09008 * 109.46955 * 65.13628 * 1 2 3 25 25 H 1.09001 * 109.46973 * 185.13394 * 1 2 3 26 26 H 1.08997 * 109.47409 * 305.13470 * 1 2 3 27 27 H 0.97002 * 120.00628 * 2.36607 * 7 6 4 28 28 H 1.09005 * 109.47299 * 59.99974 * 13 12 2 29 29 H 1.08998 * 109.47542 * 180.02562 * 13 12 2 30 30 H 1.09007 * 109.47016 * 300.00328 * 13 12 2 31 31 H 1.09001 * 109.47107 * 289.99958 * 14 12 2 32 32 H 1.08996 * 109.47039 * 50.00004 * 14 12 2 33 33 H 0.97007 * 119.99768 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.47085 * 299.99773 * 18 17 15 35 35 H 1.09005 * 109.46961 * 59.99980 * 18 17 15 36 36 H 1.08001 * 122.53710 * 359.96465 * 20 19 18 37 37 H 1.07995 * 122.53897 * 180.02562 * 21 20 19 38 38 H 1.08006 * 125.20314 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5784 -1.6371 1.1340 6 6 1.7947 -0.1771 2.4796 7 7 1.8772 -0.9408 3.5471 8 14 1.3483 1.6282 2.6550 9 1 1.1380 1.9491 4.0896 10 1 2.4505 2.4653 2.1168 11 1 0.1012 1.9055 1.8979 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4091 15 6 2.4775 -0.5164 -3.5794 16 8 3.1502 -1.5131 -3.4213 17 7 2.3787 0.0430 -4.8015 18 6 3.0835 -0.5531 -5.9392 19 6 2.8098 0.2569 -7.1801 20 6 3.5400 1.2912 -7.5998 21 6 3.0958 1.8822 -8.7701 22 6 2.0045 1.3280 -9.3005 23 16 1.4830 -0.0218 -8.3006 24 1 -0.3633 0.4321 -0.9325 25 1 -0.3633 -1.0236 0.0920 26 1 -0.3634 0.5914 0.8404 27 1 2.1387 -1.8707 3.4592 28 1 0.3491 -1.9550 -1.3693 29 1 1.8141 -2.5262 -2.2039 30 1 1.7060 -2.6221 -0.4300 31 1 0.6814 0.1052 -2.6088 32 1 2.1025 1.1188 -2.2604 33 1 1.8410 0.8404 -4.9279 34 1 4.1550 -0.5612 -5.7391 35 1 2.7340 -1.5748 -6.0882 36 1 4.4117 1.6413 -7.0669 37 1 3.5949 2.7278 -9.2196 38 1 1.5185 1.6549 -10.2079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171830352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:54 Heat of formation + Delta-G solvation = 13.185933 kcal Electronic energy + Delta-G solvation = -19503.961652 eV Core-core repulsion = 16473.786004 eV Total energy + Delta-G solvation = -3030.175648 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69216 -38.23869 -36.87016 -34.74507 -32.64663 -30.94733 -29.68724 -27.77004 -26.05613 -25.01621 -23.82644 -22.94523 -20.44146 -19.64104 -19.13154 -17.83047 -17.26887 -16.57974 -16.08097 -15.59375 -15.33421 -14.80659 -14.09988 -14.03505 -13.56949 -13.31999 -13.21897 -13.02133 -12.74122 -12.51706 -12.46080 -12.10951 -11.78657 -11.43136 -11.33417 -11.09619 -10.90751 -10.75688 -10.39755 -9.85521 -9.73465 -9.59312 -9.07878 -9.04565 -8.89334 -8.83102 -8.12550 -7.29552 -6.42017 -3.97694 0.54621 1.24818 1.63529 2.32253 2.89867 3.32649 3.37242 3.44683 3.61308 4.32664 4.52097 4.69688 4.89295 4.94041 5.11005 5.18933 5.30193 5.30551 5.52213 5.64484 5.70201 5.75615 5.88967 6.09642 6.17881 6.28344 6.34257 6.39583 6.43221 6.64758 6.83783 7.00041 7.26520 7.49845 7.75604 8.06052 8.31788 8.46280 8.50835 9.05170 9.68677 10.99239 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.003170 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.558654 B = 8829.587244 C = 9100.290520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.188 3.812 3 H 0.030 0.970 4 C -0.585 4.585 5 H 0.065 0.935 6 C 0.030 3.970 7 N -0.906 5.906 8 Si 1.043 2.957 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.507 5.507 13 C 0.032 3.968 14 C 0.033 3.967 15 C 0.515 3.485 16 O -0.515 6.515 17 N -0.738 5.738 18 C 0.195 3.805 19 C -0.198 4.198 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.211 4.211 23 S 0.112 5.888 24 H 0.020 0.980 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.268 0.732 28 H 0.012 0.988 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.400 0.600 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 6.515 -25.924 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.080 3.920 3 H 0.048 0.952 4 C -0.623 4.623 5 H 0.083 0.917 6 C -0.175 4.175 7 N -0.541 5.541 8 Si 0.872 3.128 9 H -0.212 1.212 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.231 5.231 13 C -0.116 4.116 14 C -0.099 4.099 15 C 0.302 3.698 16 O -0.389 6.389 17 N -0.393 5.393 18 C 0.069 3.931 19 C -0.316 4.316 20 C -0.149 4.149 21 C -0.168 4.168 22 C -0.347 4.347 23 S 0.376 5.624 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.234 0.766 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.256 5.810 -24.698 25.472 hybrid contribution 0.390 0.440 -1.386 1.505 sum -1.866 6.250 -26.083 26.887 Atomic orbital electron populations 1.22893 1.01328 1.01343 0.99057 1.19697 0.89170 0.94552 0.88569 0.95202 1.21914 1.39712 1.10631 0.90088 0.91713 1.25670 0.94586 1.05195 0.92066 1.70854 1.43194 1.08430 1.31584 0.84086 0.76870 0.75818 0.76017 1.21167 1.20938 1.20295 1.62013 1.58845 1.02289 0.99906 1.22366 0.95349 0.91204 1.02657 1.22003 0.97828 0.99114 0.90976 1.20994 0.81347 0.84215 0.83236 1.90671 1.39444 1.24864 1.83937 1.46166 1.53035 1.32263 1.07880 1.19558 0.98184 0.94962 0.80369 1.24557 1.01324 1.03372 1.02334 1.20262 1.01563 0.95989 0.97124 1.20208 0.97438 1.02379 0.96810 1.25731 1.02299 1.01450 1.05190 1.84465 1.29169 1.31187 1.17564 0.96107 0.92948 0.92294 0.92209 0.96945 0.91896 0.90833 0.92753 0.88540 0.76647 0.89628 0.90643 0.83910 0.84109 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.07 8.03 37.16 0.30 -3.77 16 2 C 0.19 4.48 1.89 -68.86 -0.13 4.35 16 3 H 0.03 0.72 6.57 -51.93 -0.34 0.37 16 4 C -0.59 -16.63 8.32 -34.44 -0.29 -16.92 16 5 H 0.06 2.03 7.15 -52.48 -0.38 1.65 16 6 C 0.03 0.86 5.33 -17.82 -0.09 0.77 16 7 N -0.91 -27.98 13.70 55.43 0.76 -27.22 16 8 Si 1.04 24.94 26.47 -169.99 -4.50 20.44 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.03 5.56 56.52 0.31 -5.71 16 12 N -0.51 -11.14 4.44 -237.73 -1.06 -12.20 16 13 C 0.03 0.69 8.46 60.06 0.51 1.20 16 14 C 0.03 0.55 5.02 -4.97 -0.02 0.53 16 15 C 0.52 8.32 7.52 -10.99 -0.08 8.24 16 16 O -0.52 -10.37 14.33 5.56 0.08 -10.29 16 17 N -0.74 -8.68 5.55 -61.47 -0.34 -9.02 16 18 C 0.19 2.09 6.16 -5.20 -0.03 2.06 16 19 C -0.20 -1.78 5.88 -36.00 -0.21 -1.99 16 20 C -0.12 -0.95 10.05 -41.21 -0.41 -1.37 16 21 C -0.14 -0.98 10.18 -41.21 -0.42 -1.40 16 22 C -0.21 -1.46 11.23 29.04 0.33 -1.13 16 23 S 0.11 0.91 23.33 -107.50 -2.51 -1.60 16 24 H 0.02 0.38 6.70 -51.92 -0.35 0.03 16 25 H 0.05 1.17 6.64 -51.93 -0.34 0.82 16 26 H 0.06 1.31 4.92 -51.93 -0.26 1.06 16 27 H 0.27 8.29 8.72 -40.82 -0.36 7.93 16 28 H 0.01 0.24 6.33 -51.93 -0.33 -0.08 16 29 H 0.06 1.30 5.83 -51.93 -0.30 1.00 16 30 H 0.07 1.73 6.75 -51.93 -0.35 1.38 16 31 H 0.05 0.83 6.95 -51.93 -0.36 0.47 16 32 H 0.10 1.48 7.93 -51.93 -0.41 1.07 16 33 H 0.40 3.77 8.46 -40.82 -0.35 3.43 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -33.02 319.07 -8.44 -41.46 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.12 Total: 3.05 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.56 Total: -9.43 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.64 Total: -48.44 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.50 Total: 20.44 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.02 -8.44 -41.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171830352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.647 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds