Wall clock time and date at job start Tue Mar 31 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47099 * 119.99555 * 2 1 3 5 5 H 1.08004 * 120.00020 * 114.53044 * 4 2 1 6 6 C 1.37878 * 120.00180 * 294.53219 * 4 2 1 7 7 N 1.31505 * 119.99935 * 160.59502 * 6 4 2 8 8 Si 1.86796 * 119.99790 * 340.86338 * 6 4 2 9 9 H 1.48503 * 109.47098 * 179.72449 * 8 6 4 10 10 H 1.48501 * 109.47418 * 299.73090 * 8 6 4 11 11 H 1.48505 * 109.47038 * 59.73082 * 8 6 4 12 12 N 1.46904 * 109.47316 * 239.99805 * 2 1 3 13 13 C 1.46894 * 111.00027 * 306.04606 * 12 2 1 14 14 C 1.46902 * 110.99898 * 70.00014 * 12 2 1 15 15 C 1.50701 * 109.46840 * 170.00160 * 14 12 2 16 16 O 1.21280 * 120.00192 * 359.97438 * 15 14 12 17 17 N 1.34773 * 120.00007 * 180.02562 * 15 14 12 18 18 C 1.46500 * 120.00300 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47328 * 179.97438 * 18 17 15 20 20 C 1.33391 * 125.20520 * 89.99675 * 19 18 17 21 21 C 1.38421 * 114.92258 * 179.97438 * 20 19 18 22 22 C 1.33388 * 114.92061 * 0.02562 * 21 20 19 23 23 S 1.75883 * 125.20272 * 269.69499 * 19 18 17 24 24 H 1.09008 * 109.46955 * 65.13628 * 1 2 3 25 25 H 1.09001 * 109.46973 * 185.13394 * 1 2 3 26 26 H 1.08997 * 109.47409 * 305.13470 * 1 2 3 27 27 H 0.97002 * 120.00628 * 2.36607 * 7 6 4 28 28 H 1.09005 * 109.47299 * 59.99974 * 13 12 2 29 29 H 1.08998 * 109.47542 * 180.02562 * 13 12 2 30 30 H 1.09007 * 109.47016 * 300.00328 * 13 12 2 31 31 H 1.09001 * 109.47107 * 289.99958 * 14 12 2 32 32 H 1.08996 * 109.47039 * 50.00004 * 14 12 2 33 33 H 0.97007 * 119.99768 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.47085 * 299.99773 * 18 17 15 35 35 H 1.09005 * 109.46961 * 59.99980 * 18 17 15 36 36 H 1.08001 * 122.53710 * 359.96465 * 20 19 18 37 37 H 1.07995 * 122.53897 * 180.02562 * 21 20 19 38 38 H 1.08006 * 125.20314 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5784 -1.6371 1.1340 6 6 1.7947 -0.1771 2.4796 7 7 1.8772 -0.9408 3.5471 8 14 1.3483 1.6282 2.6550 9 1 1.1380 1.9491 4.0896 10 1 2.4505 2.4653 2.1168 11 1 0.1012 1.9055 1.8979 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4091 15 6 2.4775 -0.5164 -3.5794 16 8 3.1502 -1.5131 -3.4213 17 7 2.3787 0.0430 -4.8015 18 6 3.0835 -0.5531 -5.9392 19 6 2.8098 0.2569 -7.1801 20 6 3.5400 1.2912 -7.5998 21 6 3.0958 1.8822 -8.7701 22 6 2.0045 1.3280 -9.3005 23 16 1.4830 -0.0218 -8.3006 24 1 -0.3633 0.4321 -0.9325 25 1 -0.3633 -1.0236 0.0920 26 1 -0.3634 0.5914 0.8404 27 1 2.1387 -1.8707 3.4592 28 1 0.3491 -1.9550 -1.3693 29 1 1.8141 -2.5262 -2.2039 30 1 1.7060 -2.6221 -0.4300 31 1 0.6814 0.1052 -2.6088 32 1 2.1025 1.1188 -2.2604 33 1 1.8410 0.8404 -4.9279 34 1 4.1550 -0.5612 -5.7391 35 1 2.7340 -1.5748 -6.0882 36 1 4.4117 1.6413 -7.0669 37 1 3.5949 2.7278 -9.2196 38 1 1.5185 1.6549 -10.2079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171830352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:54 Heat of formation + Delta-G solvation = -11.539369 kcal Electronic energy + Delta-G solvation = -19505.033822 eV Core-core repulsion = 16473.786004 eV Total energy + Delta-G solvation = -3031.247818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96775 -39.01615 -38.40377 -35.82694 -34.74546 -32.04483 -31.25436 -29.10426 -27.06913 -26.91884 -25.35495 -23.79224 -21.76141 -20.93774 -20.19776 -19.40556 -18.64275 -17.80512 -17.00131 -16.70797 -16.51253 -16.21765 -15.62289 -15.39089 -15.16382 -14.58962 -14.29147 -14.07839 -13.95267 -13.76478 -13.61370 -13.23592 -13.21294 -13.09264 -12.80080 -12.57414 -12.47045 -12.14219 -11.72911 -11.67805 -11.55076 -11.03475 -10.86648 -10.31390 -10.15717 -9.72421 -9.43240 -8.96123 -8.70899 -6.28395 -0.05780 0.64644 1.06396 1.48194 1.58787 1.64528 1.71757 1.76337 2.27250 2.54744 3.11046 3.34212 3.60297 3.90304 4.17692 4.24977 4.30880 4.36677 4.45522 4.56139 4.58768 4.64905 4.67913 4.73884 4.75197 4.83835 5.06756 5.17652 5.19325 5.32882 5.36839 5.51477 5.53759 5.82200 6.08516 6.26621 6.39676 6.63031 6.76574 7.27760 7.49351 8.67765 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.003170 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.558654 B = 8829.587244 C = 9100.290520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.189 3.811 3 H 0.043 0.957 4 C -0.590 4.590 5 H 0.013 0.987 6 C -0.024 4.024 7 N -0.941 5.941 8 Si 1.086 2.914 9 H -0.293 1.293 10 H -0.263 1.263 11 H -0.235 1.235 12 N -0.535 5.535 13 C 0.046 3.954 14 C 0.032 3.968 15 C 0.518 3.482 16 O -0.565 6.565 17 N -0.715 5.715 18 C 0.198 3.802 19 C -0.216 4.216 20 C -0.112 4.112 21 C -0.147 4.147 22 C -0.201 4.201 23 S 0.099 5.901 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.248 0.752 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.415 0.585 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 9.838 -28.803 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.081 3.919 3 H 0.061 0.939 4 C -0.628 4.628 5 H 0.032 0.968 6 C -0.221 4.221 7 N -0.577 5.577 8 Si 0.907 3.093 9 H -0.219 1.219 10 H -0.188 1.188 11 H -0.159 1.159 12 N -0.259 5.259 13 C -0.102 4.102 14 C -0.099 4.099 15 C 0.305 3.695 16 O -0.442 6.442 17 N -0.370 5.370 18 C 0.073 3.927 19 C -0.333 4.333 20 C -0.145 4.145 21 C -0.176 4.176 22 C -0.337 4.337 23 S 0.362 5.638 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.585 9.150 -27.651 29.346 hybrid contribution 0.871 -0.650 -0.638 1.260 sum -2.714 8.500 -28.289 29.663 Atomic orbital electron populations 1.22722 0.99180 1.00805 1.01138 1.19541 0.90614 0.94300 0.87433 0.93920 1.22114 1.38768 1.09023 0.92900 0.96831 1.27281 0.94032 1.09181 0.91624 1.71001 1.46069 1.07734 1.32888 0.83597 0.79104 0.70286 0.76360 1.21936 1.18806 1.15886 1.61771 1.59844 1.02769 1.01501 1.22154 0.96129 0.91064 1.00868 1.22104 0.99663 0.99226 0.88944 1.20894 0.80747 0.83625 0.84246 1.90664 1.41711 1.27068 1.84793 1.45947 1.52173 1.32049 1.06842 1.19483 0.97577 0.94893 0.80736 1.24322 1.02635 1.04144 1.02199 1.20489 1.01314 0.95324 0.97345 1.20455 0.97638 1.03059 0.96485 1.26072 1.01994 1.00202 1.05434 1.84530 1.29043 1.32237 1.17963 0.91883 0.94491 0.92586 0.94298 0.95407 0.91467 0.94791 0.90018 0.86285 0.74879 0.90284 0.91585 0.83169 0.81939 0.79478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.25 8.03 71.98 0.58 -6.67 16 2 C 0.19 8.75 1.89 44.17 0.08 8.83 16 3 H 0.04 1.89 6.57 -2.38 -0.02 1.88 16 4 C -0.59 -34.42 8.32 25.60 0.21 -34.20 16 5 H 0.01 0.90 7.15 -2.91 -0.02 0.88 16 6 C -0.02 -1.41 5.33 84.66 0.45 -0.96 16 7 N -0.94 -60.29 13.70 21.45 0.29 -60.00 16 8 Si 1.09 48.77 26.47 68.60 1.82 50.59 16 9 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.23 -8.97 5.56 99.48 0.55 -8.42 16 12 N -0.54 -23.04 4.44 -906.03 -4.02 -27.07 16 13 C 0.05 1.99 8.46 127.69 1.08 3.07 16 14 C 0.03 0.97 5.02 85.56 0.43 1.40 16 15 C 0.52 15.88 7.52 87.66 0.66 16.54 16 16 O -0.56 -22.74 14.33 -3.03 -0.04 -22.78 16 17 N -0.72 -15.30 5.55 -466.79 -2.59 -17.89 16 18 C 0.20 4.03 6.16 85.63 0.53 4.56 16 19 C -0.22 -3.46 5.88 24.59 0.14 -3.32 16 20 C -0.11 -1.54 10.05 21.22 0.21 -1.32 16 21 C -0.15 -1.61 10.18 21.22 0.22 -1.39 16 22 C -0.20 -2.15 11.23 66.72 0.75 -1.40 16 23 S 0.10 1.40 23.33 -56.49 -1.32 0.09 16 24 H 0.06 2.01 6.70 -2.38 -0.02 1.99 16 25 H 0.04 1.58 6.64 -2.39 -0.02 1.56 16 26 H 0.06 2.28 4.92 -2.39 -0.01 2.27 16 27 H 0.25 16.36 8.72 -92.71 -0.81 15.55 16 28 H 0.03 1.09 6.33 -2.38 -0.02 1.07 16 29 H 0.07 2.83 5.83 -2.39 -0.01 2.81 16 30 H 0.03 1.68 6.75 -2.38 -0.02 1.67 16 31 H 0.08 2.11 6.95 -2.39 -0.02 2.09 16 32 H 0.12 3.14 7.93 -2.39 -0.02 3.12 16 33 H 0.41 6.48 8.46 -92.70 -0.78 5.70 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -75.32 319.07 -0.42 -75.74 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.10 Total: 16.19 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.34 Total: -14.87 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -6.32 Total: -104.95 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.78 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.82 Total: 50.59 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.32 Total: 0.09 kcal Total: -75.32 -0.42 -75.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171830352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.198 kcal (2) G-P(sol) polarization free energy of solvation -75.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds