Wall clock time and date at job start Tue Mar 31 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46904 * 110.99997 * 176.04948 * 12 2 1 14 14 C 1.46902 * 110.99713 * 299.99977 * 12 2 1 15 15 C 1.50701 * 109.46751 * 170.00089 * 14 12 2 16 16 O 1.21284 * 120.00143 * 359.97438 * 15 14 12 17 17 N 1.34783 * 120.00129 * 180.02562 * 15 14 12 18 18 C 1.46498 * 120.00212 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46844 * 179.97438 * 18 17 15 20 20 C 1.33394 * 125.20102 * 90.00074 * 19 18 17 21 21 C 1.38418 * 114.91780 * 179.97438 * 20 19 18 22 22 C 1.33385 * 114.92478 * 359.97438 * 21 20 19 23 23 S 1.75880 * 125.20296 * 269.69069 * 19 18 17 24 24 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47028 * 59.99795 * 13 12 2 29 29 H 1.09004 * 109.46903 * 179.97438 * 13 12 2 30 30 H 1.09000 * 109.47139 * 299.99593 * 13 12 2 31 31 H 1.08993 * 109.47467 * 289.99703 * 14 12 2 32 32 H 1.09003 * 109.47418 * 50.00500 * 14 12 2 33 33 H 0.97003 * 119.99441 * 359.97438 * 17 15 14 34 34 H 1.09002 * 109.46625 * 299.99205 * 18 17 15 35 35 H 1.08996 * 109.47081 * 59.99143 * 18 17 15 36 36 H 1.07997 * 122.54110 * 359.95303 * 20 19 18 37 37 H 1.08002 * 122.53657 * 180.02562 * 21 20 19 38 38 H 1.08001 * 125.20478 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1872 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6159 16 8 2.4154 -1.9575 3.4647 17 7 1.5141 -0.4797 4.8526 18 6 1.8152 -1.3201 6.0142 19 6 1.3319 -0.6367 7.2673 20 6 0.1181 -0.7797 7.8018 21 6 -0.0993 -0.0510 8.9584 22 6 0.9380 0.6832 9.3636 23 16 2.2844 0.4653 8.2530 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9028 -0.5285 -4.4375 28 1 3.9186 0.2052 1.1592 29 1 3.8209 -1.3108 2.0865 30 1 3.8030 -1.3531 0.3069 31 1 2.0518 0.9346 2.5281 32 1 0.4721 0.1325 2.3564 33 1 1.0679 0.3731 4.9734 34 1 1.3126 -2.2814 5.9072 35 1 2.8917 -1.4781 6.0789 36 1 -0.6378 -1.4154 7.3650 37 1 -1.0375 -0.0758 9.4929 38 1 0.9505 1.3121 10.2415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171830354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:56 Heat of formation + Delta-G solvation = 21.782382 kcal Electronic energy + Delta-G solvation = -19499.708259 eV Core-core repulsion = 16469.905381 eV Total energy + Delta-G solvation = -3029.802878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67290 -38.22455 -36.73014 -34.73460 -32.62850 -30.92115 -30.14789 -28.18011 -26.17177 -24.62160 -23.80688 -22.99557 -20.50660 -19.67442 -19.37575 -17.84186 -16.83619 -16.59866 -16.04119 -15.54885 -15.43950 -14.77795 -14.18646 -14.01727 -13.63764 -13.44100 -13.21130 -13.01170 -12.82125 -12.51816 -12.46865 -12.14808 -12.10251 -11.61677 -11.09366 -11.03536 -10.91144 -10.59449 -10.56781 -10.11315 -9.60322 -9.48579 -9.11506 -9.05004 -8.93141 -8.82390 -8.55575 -7.33880 -6.05169 -4.03876 0.55194 1.25464 1.64146 2.32732 2.90873 3.26130 3.33011 3.34753 3.38076 4.33364 4.39703 4.70160 4.84802 4.93461 5.11568 5.19454 5.26408 5.30955 5.53179 5.62664 5.69216 5.76140 5.89473 6.10179 6.15720 6.29691 6.36912 6.40587 6.45567 6.64507 6.78038 7.03457 7.26258 7.49045 7.59909 7.93847 8.06458 8.47090 8.66361 9.03375 9.55834 11.07654 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.003164 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.956791 B = 8848.036620 C = 9168.063356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.505 4.505 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.297 1.297 12 N -0.509 5.509 13 C 0.034 3.966 14 C 0.029 3.971 15 C 0.516 3.484 16 O -0.514 6.514 17 N -0.738 5.738 18 C 0.195 3.805 19 C -0.198 4.198 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.211 4.211 23 S 0.113 5.887 24 H 0.028 0.972 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.264 0.736 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 5.273 25.850 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.103 0.897 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.225 1.225 12 N -0.234 5.234 13 C -0.114 4.114 14 C -0.102 4.102 15 C 0.302 3.698 16 O -0.388 6.388 17 N -0.394 5.394 18 C 0.069 3.931 19 C -0.316 4.316 20 C -0.150 4.150 21 C -0.169 4.169 22 C -0.347 4.347 23 S 0.377 5.623 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.233 0.767 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.097 4.562 25.430 25.921 hybrid contribution -2.084 1.601 0.077 2.629 sum -4.181 6.163 25.507 26.572 Atomic orbital electron populations 1.22248 0.98589 1.01541 0.98158 1.19746 0.91428 0.92614 0.88718 0.98389 1.20982 1.31922 1.13648 0.87727 0.89695 1.24928 0.95867 0.96622 0.95776 1.69881 1.45705 1.40249 0.97863 0.86882 0.80795 0.83807 0.76823 1.20503 1.19480 1.22473 1.61698 1.11041 1.51003 0.99628 1.22382 0.86912 0.98914 1.03231 1.22058 1.02784 0.94830 0.90551 1.20961 0.77957 0.87287 0.83555 1.90676 1.40175 1.22717 1.85200 1.46162 1.63649 1.23814 1.05751 1.19559 1.00734 0.93134 0.79636 1.24564 0.98398 1.05922 1.02691 1.20258 0.96714 1.01574 0.96415 1.20207 1.00185 0.98719 0.97740 1.25730 0.97143 1.06871 1.04950 1.84471 1.16158 1.42909 1.18799 0.95356 0.93851 0.91820 0.92606 0.97482 0.91751 0.89920 0.93007 0.87974 0.76673 0.89612 0.90604 0.83917 0.84128 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.47 37.16 0.31 -2.90 16 2 C 0.18 4.35 1.65 -68.86 -0.11 4.24 16 3 H 0.00 -0.03 7.20 -51.93 -0.37 -0.41 16 4 C -0.50 -14.31 8.51 -34.44 -0.29 -14.60 16 5 H 0.09 2.64 6.64 -52.49 -0.35 2.29 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 8 Si 0.89 21.81 24.37 -169.99 -4.14 17.67 16 9 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 10 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 N -0.51 -11.04 4.36 -237.72 -1.04 -12.08 16 13 C 0.03 0.71 8.88 60.07 0.53 1.25 16 14 C 0.03 0.49 5.26 -4.97 -0.03 0.47 16 15 C 0.52 8.21 7.52 -10.98 -0.08 8.12 16 16 O -0.51 -10.18 14.33 5.55 0.08 -10.10 16 17 N -0.74 -8.57 5.55 -61.47 -0.34 -8.91 16 18 C 0.19 2.06 6.16 -5.19 -0.03 2.03 16 19 C -0.20 -1.76 5.88 -36.00 -0.21 -1.97 16 20 C -0.12 -0.94 10.05 -41.21 -0.41 -1.36 16 21 C -0.14 -0.97 10.18 -41.21 -0.42 -1.39 16 22 C -0.21 -1.45 11.23 29.04 0.33 -1.13 16 23 S 0.11 0.91 23.33 -107.50 -2.51 -1.60 16 24 H 0.03 0.50 6.20 -51.93 -0.32 0.18 16 25 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 26 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 1.31 5.82 -51.93 -0.30 1.01 16 30 H 0.08 1.94 6.23 -51.93 -0.32 1.61 16 31 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.10 1.56 5.83 -51.93 -0.30 1.25 16 33 H 0.40 3.72 8.46 -40.82 -0.35 3.37 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -32.94 318.48 -7.94 -40.88 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.05 Total: 1.47 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.52 Total: -5.33 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.60 Total: -47.80 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.94 -7.94 -40.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171830354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.666 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds