Wall clock time and date at job start Tue Mar 31 2020 05:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00035 * 2 1 4 4 O 1.21548 * 119.99665 * 182.63172 * 3 2 1 5 5 C 1.47844 * 119.99903 * 2.63926 * 3 2 1 6 6 C 1.39930 * 120.02892 * 26.28200 * 5 3 2 7 7 C 1.38335 * 120.35707 * 179.74125 * 6 5 3 8 8 C 1.37756 * 120.40705 * 0.56851 * 7 6 5 9 9 C 1.40747 * 120.04562 * 359.69272 * 8 7 6 10 10 C 1.41445 * 120.17222 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00506 * 334.32966 * 10 9 8 12 12 C 1.39942 * 119.99866 * 154.33848 * 10 9 8 13 13 N 1.30827 * 119.99620 * 342.55174 * 12 10 9 14 14 Si 1.86795 * 119.99935 * 162.55429 * 12 10 9 15 15 H 1.48501 * 109.47260 * 59.99758 * 14 12 10 16 16 H 1.48504 * 109.47031 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47017 * 299.99442 * 14 12 10 18 18 C 1.39018 * 120.02187 * 206.56613 * 5 3 2 19 19 C 1.39314 * 119.99805 * 180.02562 * 2 1 3 20 20 C 1.39057 * 119.69760 * 221.93609 * 19 2 1 21 21 C 1.38349 * 119.10314 * 179.72065 * 20 19 2 22 22 C 1.38854 * 118.49361 * 0.49948 * 21 20 19 23 23 C 1.38065 * 119.31102 * 359.49938 * 22 21 20 24 24 N 1.31935 * 120.85506 * 0.25777 * 23 22 21 25 25 H 1.09001 * 109.47311 * 263.70688 * 1 2 3 26 26 H 1.09009 * 109.47048 * 23.70680 * 1 2 3 27 27 H 1.08998 * 109.47206 * 143.70319 * 1 2 3 28 28 H 1.07998 * 119.82492 * 0.03250 * 6 5 3 29 29 H 1.07997 * 119.79565 * 180.25660 * 7 6 5 30 30 H 1.08000 * 119.97503 * 179.71617 * 8 7 6 31 31 H 0.97004 * 119.99693 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.20584 * 359.95082 * 18 5 3 33 33 H 1.08002 * 120.45241 * 359.97438 * 20 19 2 34 34 H 1.08006 * 120.75832 * 180.27129 * 21 20 19 35 35 H 1.07995 * 120.34331 * 179.77611 * 22 21 20 36 36 H 1.08005 * 119.57408 * 180.27790 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1677 -0.0483 5 6 1.4008 2.4469 0.0590 6 6 0.1325 2.4972 0.6478 7 6 -0.5619 3.6920 0.7114 8 6 -0.0180 4.8434 0.1856 9 6 1.2543 4.8111 -0.4153 10 6 1.8155 5.9918 -0.9555 11 1 1.1717 6.7916 -1.2904 12 6 3.2050 6.1235 -1.0561 13 7 3.9884 5.3395 -0.3609 14 14 3.9413 7.4186 -2.1830 15 1 3.4833 8.7650 -1.7554 16 1 5.4231 7.3539 -2.1098 17 1 3.5028 7.1669 -3.5793 18 6 1.9640 3.5999 -0.4758 19 6 2.1615 -1.2065 -0.0005 20 6 3.2842 -1.3543 0.8066 21 6 3.9632 -2.5597 0.8009 22 6 3.5003 -3.5767 -0.0233 23 6 2.3788 -3.3606 -0.7989 24 7 1.7485 -2.2019 -0.7690 25 1 -0.3634 -0.1126 1.0215 26 1 -0.3633 0.9410 -0.4132 27 1 -0.3633 -0.8282 -0.6083 28 1 -0.3049 1.5995 1.0590 29 1 -1.5385 3.7214 1.1715 30 1 -0.5682 5.7714 0.2350 31 1 4.9516 5.4310 -0.4304 32 1 2.9410 3.5650 -0.9346 33 1 3.6191 -0.5405 1.4327 34 1 4.8357 -2.7051 1.4206 35 1 4.0097 -4.5285 -0.0539 36 1 2.0124 -4.1503 -1.4382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172532782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:18 Heat of formation + Delta-G solvation = 49.649361 kcal Electronic energy + Delta-G solvation = -21073.060556 eV Core-core repulsion = 17909.022130 eV Total energy + Delta-G solvation = -3164.038427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72179 -39.03938 -37.10785 -35.39679 -33.77132 -32.33471 -31.19013 -29.62165 -29.44877 -26.87166 -25.36823 -24.00046 -23.34316 -21.60390 -21.02577 -19.37370 -17.74510 -17.16187 -16.38217 -16.03394 -15.87192 -15.36740 -14.97833 -14.54183 -14.42477 -13.79474 -13.47257 -13.26536 -13.07411 -12.87009 -12.62103 -12.51711 -12.04193 -11.89784 -11.71689 -11.17176 -10.99731 -10.73395 -10.38160 -10.18167 -10.04801 -9.76590 -9.64979 -9.37078 -9.26890 -9.11299 -8.09797 -7.68405 -7.54993 -6.83809 -4.46101 1.14323 1.35079 2.15498 2.75628 3.00396 3.05054 3.06544 3.12372 3.55705 3.88426 3.92802 4.53403 4.61160 4.86400 5.07886 5.13725 5.26045 5.39847 5.48413 5.56500 5.69181 5.82936 6.03612 6.09259 6.11373 6.24462 6.27808 6.47202 6.63631 6.89727 6.93319 7.08304 7.14610 7.30336 7.37845 7.65594 7.75512 7.88764 8.08200 8.10004 8.43219 8.62116 8.75390 8.77520 10.10982 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.004576 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.271797 B = 6117.570202 C = 7015.148940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.557 5.557 3 C 0.570 3.430 4 O -0.522 6.522 5 C -0.124 4.124 6 C -0.234 4.234 7 C -0.097 4.097 8 C -0.208 4.208 9 C 0.101 3.899 10 C -0.461 4.461 11 H 0.082 0.918 12 C 0.073 3.927 13 N -0.782 5.782 14 Si 0.910 3.090 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.091 4.091 19 C 0.366 3.634 20 C -0.160 4.160 21 C -0.061 4.061 22 C -0.199 4.199 23 C 0.117 3.883 24 N -0.508 5.508 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.286 0.714 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -12.294 1.191 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.286 5.286 3 C 0.363 3.637 4 O -0.397 6.397 5 C -0.127 4.127 6 C -0.253 4.253 7 C -0.115 4.115 8 C -0.228 4.228 9 C 0.098 3.902 10 C -0.490 4.490 11 H 0.100 0.900 12 C -0.146 4.146 13 N -0.406 5.406 14 Si 0.734 3.266 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.112 4.112 19 C 0.138 3.862 20 C -0.183 4.183 21 C -0.087 4.087 22 C -0.220 4.220 23 C -0.041 4.041 24 N -0.222 5.222 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.479 -12.115 0.709 12.386 hybrid contribution 1.142 0.386 0.105 1.210 sum -1.336 -11.730 0.814 11.833 Atomic orbital electron populations 1.22615 0.77737 1.05505 1.01665 1.45348 1.08049 1.02932 1.72249 1.19186 0.87172 0.83251 0.74109 1.90741 1.13869 1.87001 1.48115 1.19235 0.95705 0.91289 1.06515 1.21048 0.95614 0.98169 1.10507 1.20486 0.98110 0.93019 0.99920 1.21147 0.98981 0.96809 1.05877 1.17556 0.90928 0.92469 0.89206 1.19566 0.91480 1.01708 1.36228 0.90009 1.25972 0.97487 0.96834 0.94328 1.69787 1.06157 1.34029 1.30672 0.86326 0.78041 0.80930 0.81262 1.18895 1.20208 1.18703 1.21543 1.00207 0.89678 0.99731 1.18314 0.90888 0.86457 0.90571 1.21936 0.97191 0.98849 1.00329 1.21462 0.98383 0.92082 0.96808 1.22001 0.99160 1.00589 1.00276 1.22437 0.91851 0.93221 0.96566 1.67156 1.34342 1.01364 1.19331 0.92312 0.87111 0.91010 0.86914 0.88658 0.88509 0.90313 0.85271 0.84147 0.84695 0.84922 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 8.67 59.85 0.52 1.53 16 2 N -0.56 -10.49 3.06 -123.83 -0.38 -10.87 16 3 C 0.57 12.77 7.21 -12.33 -0.09 12.69 16 4 O -0.52 -13.08 14.78 5.32 0.08 -13.00 16 5 C -0.12 -2.90 5.49 -105.04 -0.58 -3.47 16 6 C -0.23 -4.78 7.49 -38.91 -0.29 -5.07 16 7 C -0.10 -1.99 10.01 -39.72 -0.40 -2.39 16 8 C -0.21 -4.81 9.78 -38.81 -0.38 -5.19 16 9 C 0.10 2.61 5.56 -106.87 -0.59 2.02 16 10 C -0.46 -11.91 9.05 -37.72 -0.34 -12.26 16 11 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 12 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 13 N -0.78 -20.60 11.01 55.55 0.61 -19.99 16 14 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 15 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 16 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 C -0.09 -2.40 8.23 -38.44 -0.32 -2.71 16 19 C 0.37 6.51 6.56 -154.78 -1.02 5.49 16 20 C -0.16 -2.65 8.68 -39.24 -0.34 -2.99 16 21 C -0.06 -0.78 10.17 -39.31 -0.40 -1.18 16 22 C -0.20 -2.22 10.11 -39.42 -0.40 -2.62 16 23 C 0.12 1.46 11.17 -17.57 -0.20 1.26 16 24 N -0.51 -8.19 9.67 -12.38 -0.12 -8.31 16 25 H 0.06 0.79 7.26 -51.93 -0.38 0.41 16 26 H 0.11 1.77 4.91 -51.92 -0.25 1.52 16 27 H 0.07 1.01 7.57 -51.93 -0.39 0.62 16 28 H 0.11 1.94 4.49 -52.49 -0.24 1.70 16 29 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 31 H 0.29 6.95 8.30 -40.82 -0.34 6.61 16 32 H 0.13 3.67 6.04 -52.49 -0.32 3.35 16 33 H 0.14 2.49 6.97 -52.49 -0.37 2.13 16 34 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -30.11 306.47 -8.73 -38.84 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -3.61 Total: 8.29 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -4.91 Total: -13.14 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.11 Total: -39.16 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.11 -8.73 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172532782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.493 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds