Wall clock time and date at job start Tue Mar 31 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00035 * 2 1 4 4 O 1.21548 * 119.99665 * 182.63172 * 3 2 1 5 5 C 1.47844 * 119.99903 * 2.63926 * 3 2 1 6 6 C 1.39930 * 120.02892 * 26.28200 * 5 3 2 7 7 C 1.38335 * 120.35707 * 179.74125 * 6 5 3 8 8 C 1.37756 * 120.40705 * 0.56851 * 7 6 5 9 9 C 1.40747 * 120.04562 * 359.69272 * 8 7 6 10 10 C 1.41445 * 120.17222 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00506 * 334.32966 * 10 9 8 12 12 C 1.39942 * 119.99866 * 154.33848 * 10 9 8 13 13 N 1.30827 * 119.99620 * 342.55174 * 12 10 9 14 14 Si 1.86795 * 119.99935 * 162.55429 * 12 10 9 15 15 H 1.48501 * 109.47260 * 59.99758 * 14 12 10 16 16 H 1.48504 * 109.47031 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47017 * 299.99442 * 14 12 10 18 18 C 1.39018 * 120.02187 * 206.56613 * 5 3 2 19 19 C 1.39314 * 119.99805 * 180.02562 * 2 1 3 20 20 C 1.39057 * 119.69760 * 221.93609 * 19 2 1 21 21 C 1.38349 * 119.10314 * 179.72065 * 20 19 2 22 22 C 1.38854 * 118.49361 * 0.49948 * 21 20 19 23 23 C 1.38065 * 119.31102 * 359.49938 * 22 21 20 24 24 N 1.31935 * 120.85506 * 0.25777 * 23 22 21 25 25 H 1.09001 * 109.47311 * 263.70688 * 1 2 3 26 26 H 1.09009 * 109.47048 * 23.70680 * 1 2 3 27 27 H 1.08998 * 109.47206 * 143.70319 * 1 2 3 28 28 H 1.07998 * 119.82492 * 0.03250 * 6 5 3 29 29 H 1.07997 * 119.79565 * 180.25660 * 7 6 5 30 30 H 1.08000 * 119.97503 * 179.71617 * 8 7 6 31 31 H 0.97004 * 119.99693 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.20584 * 359.95082 * 18 5 3 33 33 H 1.08002 * 120.45241 * 359.97438 * 20 19 2 34 34 H 1.08006 * 120.75832 * 180.27129 * 21 20 19 35 35 H 1.07995 * 120.34331 * 179.77611 * 22 21 20 36 36 H 1.08005 * 119.57408 * 180.27790 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1677 -0.0483 5 6 1.4008 2.4469 0.0590 6 6 0.1325 2.4972 0.6478 7 6 -0.5619 3.6920 0.7114 8 6 -0.0180 4.8434 0.1856 9 6 1.2543 4.8111 -0.4153 10 6 1.8155 5.9918 -0.9555 11 1 1.1717 6.7916 -1.2904 12 6 3.2050 6.1235 -1.0561 13 7 3.9884 5.3395 -0.3609 14 14 3.9413 7.4186 -2.1830 15 1 3.4833 8.7650 -1.7554 16 1 5.4231 7.3539 -2.1098 17 1 3.5028 7.1669 -3.5793 18 6 1.9640 3.5999 -0.4758 19 6 2.1615 -1.2065 -0.0005 20 6 3.2842 -1.3543 0.8066 21 6 3.9632 -2.5597 0.8009 22 6 3.5003 -3.5767 -0.0233 23 6 2.3788 -3.3606 -0.7989 24 7 1.7485 -2.2019 -0.7690 25 1 -0.3634 -0.1126 1.0215 26 1 -0.3633 0.9410 -0.4132 27 1 -0.3633 -0.8282 -0.6083 28 1 -0.3049 1.5995 1.0590 29 1 -1.5385 3.7214 1.1715 30 1 -0.5682 5.7714 0.2350 31 1 4.9516 5.4310 -0.4304 32 1 2.9410 3.5650 -0.9346 33 1 3.6191 -0.5405 1.4327 34 1 4.8357 -2.7051 1.4206 35 1 4.0097 -4.5285 -0.0539 36 1 2.0124 -4.1503 -1.4382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172532782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:17 Heat of formation + Delta-G solvation = 32.555515 kcal Electronic energy + Delta-G solvation = -21073.801801 eV Core-core repulsion = 17909.022130 eV Total energy + Delta-G solvation = -3164.779671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09419 -40.44730 -38.86129 -36.92460 -35.57195 -33.43726 -32.68712 -31.38470 -30.93891 -28.25969 -27.17065 -25.44941 -24.45951 -23.05709 -22.81017 -20.94004 -19.45644 -18.56775 -17.74712 -17.48160 -17.27577 -16.91723 -16.65020 -16.02072 -15.77426 -15.22729 -14.97358 -14.73673 -14.55133 -14.23311 -14.11218 -14.03535 -13.55310 -13.50385 -12.96871 -12.85447 -12.64869 -12.51174 -12.03841 -11.94655 -11.49046 -11.25480 -11.06900 -10.89226 -10.78916 -10.49826 -9.60386 -9.39192 -9.26571 -8.67703 -6.39923 -0.05885 0.28137 0.45685 0.97707 1.35211 1.46150 1.49200 1.59687 1.90110 2.17705 2.69837 2.80934 3.54841 3.61553 3.63359 3.96236 4.04488 4.16053 4.19145 4.38547 4.46715 4.52095 4.64681 4.75891 4.85476 4.87413 5.02616 5.06333 5.15704 5.23678 5.26788 5.38051 5.47610 5.74507 5.81346 5.91281 5.99726 6.07266 6.27263 6.56091 6.84942 6.88373 6.91246 7.03171 8.28945 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.004576 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.271797 B = 6117.570202 C = 7015.148940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.553 5.553 3 C 0.565 3.435 4 O -0.565 6.565 5 C -0.134 4.134 6 C -0.210 4.210 7 C -0.093 4.093 8 C -0.211 4.211 9 C 0.070 3.930 10 C -0.499 4.499 11 H 0.086 0.914 12 C 0.030 3.970 13 N -0.827 5.827 14 Si 0.982 3.018 15 H -0.251 1.251 16 H -0.274 1.274 17 H -0.260 1.260 18 C -0.129 4.129 19 C 0.328 3.672 20 C -0.186 4.186 21 C -0.060 4.060 22 C -0.177 4.177 23 C 0.112 3.888 24 N -0.525 5.525 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.286 0.714 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -14.827 1.391 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.280 5.280 3 C 0.358 3.642 4 O -0.443 6.443 5 C -0.137 4.137 6 C -0.229 4.229 7 C -0.111 4.111 8 C -0.231 4.231 9 C 0.068 3.932 10 C -0.528 4.528 11 H 0.105 0.895 12 C -0.185 4.185 13 N -0.453 5.453 14 Si 0.802 3.198 15 H -0.175 1.175 16 H -0.198 1.198 17 H -0.184 1.184 18 C -0.149 4.149 19 C 0.102 3.898 20 C -0.209 4.209 21 C -0.086 4.086 22 C -0.197 4.197 23 C -0.046 4.046 24 N -0.239 5.239 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.182 0.818 35 H 0.197 0.803 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.028 -14.681 0.921 15.252 hybrid contribution 1.487 0.839 0.109 1.711 sum -2.542 -13.842 1.030 14.111 Atomic orbital electron populations 1.22768 0.75865 1.05674 1.03504 1.45227 1.09213 1.02513 1.71021 1.19088 0.86717 0.84220 0.74195 1.90700 1.15540 1.87723 1.50370 1.19491 0.96916 0.91108 1.06232 1.21565 0.93848 0.99845 1.07620 1.20984 0.99768 0.91749 0.98627 1.21470 0.97920 0.98627 1.05050 1.17893 0.92450 0.92485 0.90373 1.19859 0.92429 1.02309 1.38213 0.89547 1.26861 0.97602 0.98849 0.95191 1.69902 1.06277 1.36354 1.32732 0.85252 0.77144 0.78466 0.78913 1.17492 1.19821 1.18423 1.21324 0.99736 0.91393 1.02478 1.18432 0.92088 0.86649 0.92595 1.21922 0.97961 0.99942 1.01034 1.21873 0.98666 0.90911 0.97122 1.22518 0.97960 1.01578 0.97605 1.23250 0.91911 0.92714 0.96706 1.67156 1.35244 1.02134 1.19322 0.89720 0.87866 0.89525 0.82924 0.83897 0.87055 0.90340 0.88870 0.86825 0.81803 0.80250 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.79 8.67 127.77 1.11 2.89 16 2 N -0.55 -20.91 3.06 -663.98 -2.03 -22.95 16 3 C 0.57 26.49 7.21 86.79 0.63 27.12 16 4 O -0.56 -30.39 14.78 -3.87 -0.06 -30.45 16 5 C -0.13 -6.47 5.49 -20.14 -0.11 -6.58 16 6 C -0.21 -8.26 7.49 22.70 0.17 -8.09 16 7 C -0.09 -3.62 10.01 22.18 0.22 -3.39 16 8 C -0.21 -9.69 9.78 22.77 0.22 -9.47 16 9 C 0.07 3.80 5.56 -21.32 -0.12 3.68 16 10 C -0.50 -27.09 9.05 23.47 0.21 -26.87 16 11 H 0.09 4.39 7.90 -2.91 -0.02 4.37 16 12 C 0.03 1.57 5.14 85.26 0.44 2.00 16 13 N -0.83 -46.73 11.01 21.83 0.24 -46.49 16 14 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 15 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 18 C -0.13 -7.19 8.23 23.01 0.19 -7.00 16 19 C 0.33 11.63 6.56 132.95 0.87 12.50 16 20 C -0.19 -6.20 8.68 22.49 0.20 -6.00 16 21 C -0.06 -1.39 10.17 22.44 0.23 -1.16 16 22 C -0.18 -3.18 10.11 22.38 0.23 -2.95 16 23 C 0.11 2.38 11.17 84.64 0.95 3.33 16 24 N -0.52 -15.99 9.67 -193.09 -1.87 -17.85 16 25 H 0.08 2.00 7.26 -2.39 -0.02 1.98 16 26 H 0.10 3.10 4.91 -2.38 -0.01 3.09 16 27 H 0.09 2.26 7.57 -2.39 -0.02 2.24 16 28 H 0.15 4.75 4.49 -2.91 -0.01 4.74 16 29 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 30 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 32 H 0.09 5.81 6.04 -2.91 -0.02 5.79 16 33 H 0.11 4.32 6.97 -2.91 -0.02 4.30 16 34 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -72.89 306.47 4.85 -68.04 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 1.11 Total: 27.94 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 5.43 Total: -20.00 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -3.66 Total: -87.29 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.06 Total: -30.45 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -72.89 4.85 -68.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172532782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.596 kcal (2) G-P(sol) polarization free energy of solvation -72.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds