Wall clock time and date at job start Tue Mar 31 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47061 * 2 1 4 4 C 1.50707 * 109.47011 * 240.00721 * 2 1 3 5 5 H 1.07998 * 119.99590 * 240.00227 * 4 2 1 6 6 C 1.37870 * 120.00343 * 59.99342 * 4 2 1 7 7 N 1.31520 * 119.99973 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00281 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47322 * 59.99676 * 8 6 4 10 10 H 1.48495 * 109.47620 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46761 * 299.99994 * 8 6 4 12 12 N 1.46492 * 109.47679 * 120.00160 * 2 1 3 13 13 C 1.34774 * 120.00381 * 275.00162 * 12 2 1 14 14 O 1.21695 * 119.99667 * 359.97438 * 13 12 2 15 15 C 1.46676 * 120.00459 * 180.27212 * 13 12 2 16 16 S 1.76219 * 126.12931 * 354.20367 * 15 13 12 17 17 C 1.70956 * 90.31189 * 179.97438 * 16 15 13 18 18 N 1.29428 * 110.39261 * 0.02562 * 17 16 15 19 19 C 1.30935 * 117.36455 * 359.74493 * 18 17 16 20 20 C 1.50698 * 122.90510 * 180.30759 * 19 18 17 21 21 C 1.52996 * 109.47129 * 242.92063 * 20 19 18 22 22 C 1.52994 * 109.47198 * 2.92404 * 20 19 18 23 23 C 1.53004 * 109.47025 * 122.92338 * 20 19 18 24 24 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46857 * 299.99460 * 1 2 3 26 26 H 1.08994 * 109.47933 * 59.99790 * 1 2 3 27 27 H 0.96999 * 120.00068 * 180.02562 * 7 6 4 28 28 H 0.97008 * 120.00147 * 94.99924 * 12 2 1 29 29 H 1.08006 * 124.79823 * 180.02562 * 17 16 15 30 30 H 1.09003 * 109.46913 * 77.86763 * 21 20 19 31 31 H 1.09001 * 109.47311 * 197.86130 * 21 20 19 32 32 H 1.08994 * 109.47615 * 317.86473 * 21 20 19 33 33 H 1.08996 * 109.47342 * 59.99985 * 22 20 19 34 34 H 1.09002 * 109.47112 * 180.02562 * 22 20 19 35 35 H 1.08997 * 109.47135 * 299.99747 * 22 20 19 36 36 H 1.08993 * 109.47262 * 42.18129 * 23 20 19 37 37 H 1.09008 * 109.46965 * 162.17958 * 23 20 19 38 38 H 1.09000 * 109.47382 * 282.17863 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0080 10 1 1.8257 -0.4204 -5.2206 11 1 3.8061 -1.1205 -4.0084 12 7 2.0184 -0.6906 1.1960 13 6 2.1472 -0.0183 2.3570 14 8 1.8581 1.1625 2.4117 15 6 2.6419 -0.7083 3.5531 16 16 2.9771 -2.4326 3.6940 17 6 3.4561 -2.2161 5.3207 18 7 3.3530 -0.9712 5.6593 19 6 2.9279 -0.1327 4.7479 20 6 2.7677 1.3436 5.0046 21 6 1.2947 1.7299 4.8570 22 6 3.2407 1.6689 6.4227 23 6 3.6050 2.1307 3.9945 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 0.7086 1.1615 -3.4843 28 1 2.2491 -1.6318 1.1525 29 1 3.7965 -3.0064 5.9734 30 1 0.7492 1.4308 5.7520 31 1 1.2134 2.8089 4.7256 32 1 0.8719 1.2254 3.9882 33 1 4.2901 1.3937 6.5278 34 1 3.1243 2.7367 6.6085 35 1 2.6441 1.1082 7.1423 36 1 3.4997 1.6817 3.0069 37 1 3.2592 3.1640 3.9626 38 1 4.6527 2.1072 4.2943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176684481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:32 Heat of formation + Delta-G solvation = 7.771811 kcal Electronic energy + Delta-G solvation = -20615.994900 eV Core-core repulsion = 17585.584478 eV Total energy + Delta-G solvation = -3030.410422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58774 -38.58734 -35.93518 -34.73366 -32.50483 -30.47400 -28.64763 -27.09934 -26.86044 -25.54691 -25.26080 -22.37678 -21.11725 -20.01180 -18.87329 -17.53026 -16.96903 -15.84633 -15.45630 -15.02788 -14.86520 -14.49738 -14.40926 -14.05507 -13.57602 -13.12912 -12.96061 -12.50288 -12.10532 -11.98643 -11.83181 -11.56369 -11.25120 -11.13873 -10.93668 -10.75772 -10.70878 -10.61055 -10.55071 -10.29966 -10.26212 -9.69532 -9.39116 -9.11622 -9.06209 -8.75382 -8.58840 -7.96121 -6.16888 -4.26590 0.39735 1.29281 1.67115 2.64552 3.23230 3.28755 3.29663 3.65686 3.91151 4.17287 4.34505 4.90823 5.02004 5.15708 5.30864 5.39539 5.47445 5.57690 5.90930 6.00331 6.04037 6.16573 6.20292 6.34049 6.38177 6.52608 6.75411 6.80421 6.83738 6.94489 7.07372 7.34916 7.45605 7.61421 7.69338 7.84258 8.08242 8.51419 8.68691 8.93873 9.40670 10.88993 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.005053 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.263932 B = 5540.406869 C = 6236.245227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.572 3.428 14 O -0.514 6.514 15 C -0.271 4.271 16 S 0.153 5.847 17 C 0.018 3.982 18 N -0.468 5.468 19 C 0.140 3.860 20 C 0.014 3.986 21 C -0.141 4.141 22 C -0.127 4.127 23 C -0.146 4.146 24 H 0.026 0.974 25 H 0.016 0.984 26 H 0.092 0.908 27 H 0.266 0.734 28 H 0.386 0.614 29 H 0.201 0.799 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -4.943 14.056 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.071 0.929 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.346 5.346 13 C 0.356 3.644 14 O -0.395 6.395 15 C -0.395 4.395 16 S 0.408 5.592 17 C -0.277 4.277 18 N -0.181 5.181 19 C 0.003 3.997 20 C 0.011 3.989 21 C -0.198 4.198 22 C -0.185 4.185 23 C -0.203 4.203 24 H 0.045 0.955 25 H 0.035 0.965 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.219 0.781 29 H 0.218 0.782 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.540 -4.774 13.784 15.011 hybrid contribution 0.410 -0.350 -0.580 0.792 sum 3.950 -5.124 13.204 14.704 Atomic orbital electron populations 1.22087 0.98198 0.99231 1.01076 1.18821 0.91150 0.94047 0.79502 0.92912 1.21147 1.32735 1.13356 0.90261 0.92142 1.24864 0.94719 0.94917 0.99018 1.69885 1.35646 1.22320 1.24097 0.86498 0.79202 0.79608 0.81754 1.20128 1.21077 1.20139 1.46545 1.64417 1.13303 1.10288 1.16715 0.79273 0.86582 0.81794 1.90746 1.50514 1.14424 1.83802 1.25914 1.15833 0.96279 1.01460 1.83984 1.57949 1.06108 1.11193 1.28599 1.03465 0.97372 0.98308 1.66044 1.16339 1.01351 1.34377 1.20703 0.95015 0.97438 0.86544 1.19120 0.97742 0.85770 0.96284 1.22112 0.93295 1.02143 1.02263 1.21756 1.01219 1.00483 0.94994 1.22198 0.96993 1.00075 1.01041 0.95452 0.96493 0.88966 0.92441 0.78141 0.78238 0.94271 0.92176 0.89394 0.92729 0.92791 0.92582 0.89239 0.92139 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.15 0.34 -3.22 16 2 C 0.27 6.56 2.56 -69.09 -0.18 6.38 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -14.39 5.06 -56.25 -0.28 -14.68 16 13 C 0.57 11.26 6.60 -12.86 -0.08 11.18 16 14 O -0.51 -11.08 9.66 5.19 0.05 -11.03 16 15 C -0.27 -4.46 6.06 -37.10 -0.22 -4.69 16 16 S 0.15 1.88 22.37 -107.50 -2.40 -0.52 16 17 C 0.02 0.20 12.22 51.75 0.63 0.84 16 18 N -0.47 -6.66 9.53 -11.53 -0.11 -6.77 16 19 C 0.14 2.23 5.45 -83.90 -0.46 1.77 16 20 C 0.01 0.21 0.75 -155.66 -0.12 0.09 16 21 C -0.14 -2.22 8.00 37.16 0.30 -1.93 16 22 C -0.13 -1.67 7.66 37.15 0.28 -1.38 16 23 C -0.15 -2.36 7.98 37.16 0.30 -2.06 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 7.13 7.74 -40.82 -0.32 6.82 16 29 H 0.20 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.04 0.56 8.01 -51.93 -0.42 0.14 16 31 H 0.06 0.91 7.76 -51.93 -0.40 0.50 16 32 H 0.09 1.62 4.83 -51.93 -0.25 1.37 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.09 1.70 4.42 -51.93 -0.23 1.47 16 37 H 0.06 0.93 7.76 -51.92 -0.40 0.53 16 38 H 0.04 0.58 8.01 -51.93 -0.42 0.16 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -28.57 316.30 -7.19 -35.77 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.22 Total: 6.39 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.40 Total: -5.52 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.23 Total: -45.11 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.05 Total: -11.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.40 Total: -0.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.57 -7.19 -35.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176684481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.541 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds