Wall clock time and date at job start Tue Mar 31 2020 05:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35951 * 117.00166 * 2 1 4 4 C 1.38576 * 120.02815 * 0.25251 * 3 2 1 5 5 C 1.38768 * 119.90163 * 180.31933 * 4 3 2 6 6 N 1.40051 * 120.02566 * 179.70150 * 5 4 3 7 7 C 1.34771 * 120.00132 * 146.41862 * 6 5 4 8 8 O 1.21588 * 120.00134 * 354.69036 * 7 6 5 9 9 N 1.34779 * 119.99582 * 174.68148 * 7 6 5 10 10 C 1.46506 * 119.99605 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47065 * 34.73376 * 10 9 7 12 12 C 1.52998 * 109.47415 * 274.72470 * 10 9 7 13 13 C 1.50702 * 109.46755 * 154.72916 * 10 9 7 14 14 H 1.08002 * 120.00135 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99839 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99935 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00136 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47284 * 89.99741 * 17 15 13 19 19 H 1.48498 * 109.47261 * 210.00145 * 17 15 13 20 20 H 1.48507 * 109.47094 * 329.99780 * 17 15 13 21 21 C 1.38870 * 119.95548 * 359.42781 * 5 4 3 22 22 C 1.38178 * 120.05669 * 0.27138 * 21 5 4 23 23 C 1.38346 * 120.09563 * 0.02562 * 22 21 5 24 24 F 1.35096 * 119.98121 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47375 * 300.00269 * 1 2 3 26 26 H 1.09000 * 109.46937 * 59.99677 * 1 2 3 27 27 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.04823 * 0.04045 * 4 3 2 29 29 H 0.97008 * 119.99583 * 326.42578 * 6 5 4 30 30 H 0.97001 * 120.00391 * 359.73353 * 9 7 6 31 31 H 1.09000 * 109.47549 * 300.00960 * 12 10 9 32 32 H 1.09008 * 109.46779 * 60.00257 * 12 10 9 33 33 H 1.08995 * 109.47190 * 179.97438 * 12 10 9 34 34 H 0.96999 * 119.99800 * 179.97438 * 16 15 13 35 35 H 1.08000 * 119.97491 * 180.30174 * 21 5 4 36 36 H 1.07994 * 119.95448 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2921 2.3739 0.0053 5 6 1.9248 3.6089 -0.0014 6 7 1.1652 4.7855 -0.0024 7 6 1.6191 5.8812 0.6376 8 8 2.6395 5.8217 1.2962 9 7 0.9420 7.0431 0.5475 10 6 1.4357 8.2344 1.2428 11 1 2.5257 8.2316 1.2392 12 6 0.9303 8.2283 2.6869 13 6 0.9343 9.4699 0.5404 14 1 0.3107 9.3770 -0.3364 15 6 1.2727 10.7188 1.0166 16 7 2.0325 10.8319 2.0841 17 14 0.6506 12.2502 0.1465 18 1 -0.6542 12.6549 0.7287 19 1 1.6324 13.3509 0.3191 20 1 0.4791 11.9623 -1.3003 21 6 3.3118 3.6775 -0.0014 22 6 4.0621 2.5171 -0.0004 23 6 3.4336 1.2846 0.0001 24 9 4.1694 0.1516 0.0006 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2135 2.3188 0.0101 29 1 0.3122 4.8117 -0.4638 30 1 0.1301 7.0917 0.0189 31 1 -0.1596 8.2311 2.6905 32 1 1.2930 7.3346 3.1950 33 1 1.2981 9.1144 3.2043 34 1 2.2708 11.7105 2.4189 35 1 3.8046 4.6385 -0.0017 36 1 5.1406 2.5723 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187107977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:07 Heat of formation + Delta-G solvation = -82.879103 kcal Electronic energy + Delta-G solvation = -21508.199157 eV Core-core repulsion = 17907.644640 eV Total energy + Delta-G solvation = -3600.554517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.67105 -40.51842 -39.43573 -37.44754 -35.04742 -34.16641 -32.44622 -30.43049 -29.73825 -28.42146 -27.14405 -25.30603 -23.06639 -22.72273 -21.20099 -19.95749 -18.51970 -18.43360 -17.32750 -16.77204 -16.29084 -16.17811 -15.77993 -15.12383 -15.06115 -14.81962 -14.34468 -14.28399 -14.12909 -13.37262 -12.94314 -12.87495 -12.51117 -12.45233 -11.90781 -11.85069 -11.49368 -11.29019 -11.14468 -11.00293 -10.79892 -10.38703 -10.28699 -9.94147 -9.52872 -9.10688 -8.71596 -8.62507 -8.09621 -7.71548 -6.17850 -4.27483 1.09146 1.27946 2.91636 3.07256 3.20796 3.28344 3.30450 3.42443 3.87621 4.26146 4.28000 4.67488 4.74570 4.87720 4.91626 5.09736 5.14975 5.15642 5.24145 5.41497 5.59015 5.85507 6.24168 6.32421 6.44436 6.73089 6.81594 6.91105 7.03923 7.14180 7.19729 7.36505 7.56176 7.75347 7.91232 8.09063 8.63944 8.76199 9.12140 9.40586 10.88179 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.003266 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.938384 B = 8570.360650 C = 8900.731483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.114 3.886 4 C -0.221 4.221 5 C 0.216 3.784 6 N -0.695 5.695 7 C 0.692 3.308 8 O -0.578 6.578 9 N -0.716 5.716 10 C 0.280 3.720 11 H 0.051 0.949 12 C -0.149 4.149 13 C -0.536 4.536 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.129 4.129 22 C -0.093 4.093 23 C 0.038 3.962 24 F -0.138 7.138 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.404 0.596 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.091 0.909 34 H 0.265 0.735 35 H 0.152 0.848 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 -16.889 -5.666 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.067 3.933 4 C -0.243 4.243 5 C 0.118 3.882 6 N -0.343 5.343 7 C 0.392 3.608 8 O -0.455 6.455 9 N -0.367 5.367 10 C 0.178 3.822 11 H 0.069 0.931 12 C -0.207 4.207 13 C -0.574 4.574 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.150 4.150 22 C -0.112 4.112 23 C 0.018 3.982 24 F -0.117 7.117 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.156 0.844 29 H 0.239 0.761 30 H 0.219 0.781 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.169 0.831 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.069 -16.855 -4.903 17.819 hybrid contribution -1.399 0.858 -0.820 1.835 sum -4.468 -15.996 -5.723 17.567 Atomic orbital electron populations 1.23095 0.78133 1.04037 1.01596 1.86127 1.21579 1.25780 1.88882 1.18593 0.90533 0.84894 0.99281 1.20717 1.00184 0.90219 1.13201 1.17259 0.90722 0.84646 0.95586 1.42929 1.24127 1.10115 1.57081 1.16161 0.84130 0.80376 0.80113 1.90906 1.25538 1.83878 1.45148 1.45901 1.28313 1.09144 1.53375 1.18722 0.96031 0.78893 0.88549 0.93129 1.22112 0.98536 1.00973 0.99116 1.21192 1.33171 0.90192 1.12849 0.92045 1.24882 0.94748 0.99072 0.94963 1.69901 1.35469 1.24208 1.22364 0.86424 0.78556 0.82163 0.79805 1.20539 1.21018 1.19853 1.21113 0.92097 0.99497 1.02294 1.20895 1.01018 0.89587 0.99748 1.16879 0.85810 0.82930 1.12608 1.91461 1.76531 1.49024 1.94702 0.92389 0.92474 0.88125 0.84409 0.76101 0.78089 0.95494 0.96565 0.89024 0.92476 0.83078 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.73 10.36 -19.59 -0.20 -3.93 16 3 C 0.11 1.48 6.69 -39.20 -0.26 1.22 16 4 C -0.22 -2.67 8.95 -39.26 -0.35 -3.02 16 5 C 0.22 3.08 6.28 -83.67 -0.53 2.55 16 6 N -0.69 -9.92 5.35 -14.22 -0.08 -10.00 16 7 C 0.69 13.27 8.27 -86.92 -0.72 12.55 16 8 O -0.58 -13.32 13.68 5.29 0.07 -13.25 16 9 N -0.72 -14.12 5.07 -59.81 -0.30 -14.42 16 10 C 0.28 6.88 2.56 -69.08 -0.18 6.70 16 11 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 12 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 13 C -0.54 -13.73 8.73 -34.44 -0.30 -14.03 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.88 -24.31 11.32 55.43 0.63 -23.68 16 17 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 21 C -0.13 -1.96 8.65 -39.37 -0.34 -2.30 16 22 C -0.09 -1.25 10.01 -39.56 -0.40 -1.64 16 23 C 0.04 0.54 7.31 -39.28 -0.29 0.25 16 24 F -0.14 -2.00 17.11 2.25 0.04 -1.96 16 25 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 26 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.14 1.27 6.30 -52.49 -0.33 0.94 16 29 H 0.40 4.25 8.84 -40.82 -0.36 3.89 16 30 H 0.39 6.40 8.56 -40.82 -0.35 6.05 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.15 2.58 6.41 -52.49 -0.34 2.25 16 36 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -31.15 313.17 -6.38 -37.53 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.11 Total: 8.03 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.12 Total: 1.87 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.25 Total: -48.10 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.13 Total: -17.18 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.15 -6.38 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187107977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.352 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds