Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00086 * 2 1 3 5 5 H 1.08003 * 120.00276 * 119.99373 * 4 2 1 6 6 C 1.37882 * 120.00054 * 300.00105 * 4 2 1 7 7 N 1.31512 * 119.99850 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46961 * 89.99990 * 8 6 4 10 10 H 1.48497 * 109.47146 * 209.99690 * 8 6 4 11 11 H 1.48495 * 109.47296 * 330.00194 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 13 13 C 1.34784 * 119.99893 * 85.00288 * 12 2 1 14 14 O 1.21633 * 119.99704 * 359.97438 * 13 12 2 15 15 C 1.47264 * 120.00042 * 179.72668 * 13 12 2 16 16 C 1.35208 * 123.14102 * 180.02562 * 15 13 12 17 17 S 1.70945 * 108.82521 * 179.97438 * 16 15 13 18 18 C 1.70768 * 91.13198 * 0.02562 * 17 16 15 19 19 C 1.50694 * 124.72375 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47299 * 239.97922 * 19 18 17 21 21 C 1.53002 * 109.46871 * 359.97438 * 19 18 17 22 22 C 1.52999 * 109.47476 * 119.97122 * 19 18 17 23 23 N 1.28647 * 110.55804 * 359.74948 * 18 17 16 24 24 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 25 25 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 27 27 H 0.96997 * 119.99952 * 180.02562 * 7 6 4 28 28 H 0.97005 * 120.00261 * 265.00500 * 12 2 1 29 29 H 1.07998 * 125.58383 * 359.97438 * 16 15 13 30 30 H 1.08996 * 109.47347 * 59.99338 * 20 19 18 31 31 H 1.08996 * 109.47268 * 179.97438 * 20 19 18 32 32 H 1.09002 * 109.46557 * 299.99610 * 20 19 18 33 33 H 1.09004 * 109.47402 * 59.99950 * 21 19 18 34 34 H 1.09005 * 109.47068 * 179.97438 * 21 19 18 35 35 H 1.09004 * 109.46765 * 299.99856 * 21 19 18 36 36 H 1.09002 * 109.46437 * 60.00355 * 22 19 18 37 37 H 1.08996 * 109.47480 * 180.02562 * 22 19 18 38 38 H 1.08999 * 109.47509 * 300.00394 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6296 -0.5460 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7120 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8574 1.1618 -2.4119 15 6 2.6437 -0.7110 -3.5580 16 6 2.7979 -0.0990 -4.7538 17 16 3.3927 -1.2363 -5.8829 18 6 3.4005 -2.4627 -4.6946 19 6 3.8358 -3.8857 -4.9325 20 6 2.6718 -4.8322 -4.6318 21 6 4.2633 -4.0509 -6.3923 22 6 5.0141 -4.2187 -4.0152 23 7 2.9884 -2.0014 -3.5666 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.7094 1.1617 3.4844 28 1 2.2490 -1.6319 -1.1526 29 1 2.5809 0.9384 -4.9614 30 1 1.8324 -4.5949 -5.2853 31 1 2.9866 -5.8613 -4.8043 32 1 2.3673 -4.7144 -3.5918 33 1 5.0925 -3.3766 -6.6066 34 1 4.5786 -5.0801 -6.5643 35 1 3.4237 -3.8137 -7.0458 36 1 4.7095 -4.1010 -2.9753 37 1 5.3293 -5.2478 -4.1876 38 1 5.8433 -3.5445 -4.2295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263792752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = -36.772829 kcal Electronic energy + Delta-G solvation = -19896.085702 eV Core-core repulsion = 16863.743679 eV Total energy + Delta-G solvation = -3032.342023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55357 -39.93736 -37.54180 -36.77420 -34.36164 -31.42857 -30.74032 -28.26669 -28.13350 -27.41402 -26.78583 -24.43116 -22.36066 -20.99835 -20.41641 -19.47546 -18.41754 -17.44116 -16.94832 -16.61303 -16.46131 -15.92580 -15.44687 -15.13931 -14.98147 -14.51553 -14.40464 -14.28387 -13.75935 -13.20638 -13.07195 -13.02214 -12.91866 -12.81123 -12.75532 -12.55172 -12.49606 -12.31761 -12.16140 -11.94073 -11.86430 -11.18824 -11.09070 -10.72413 -10.63747 -10.60045 -10.03719 -9.70428 -8.21002 -6.38910 -0.48989 0.27477 0.60391 0.98079 1.42743 1.43877 1.55139 2.31478 2.37606 2.54318 2.94807 3.09160 3.66259 3.97220 4.00554 4.12047 4.22054 4.36898 4.65526 4.73704 4.80219 4.82560 4.86130 4.90050 5.01680 5.02449 5.02556 5.10399 5.30523 5.35131 5.41695 5.45302 5.53245 5.61191 5.81781 6.02974 6.45454 6.66140 6.88019 7.23673 7.39490 8.85836 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.004405 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.506969 B = 6354.489368 C = 7247.377204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.976 3.024 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.262 1.262 12 N -0.686 5.686 13 C 0.571 3.429 14 O -0.592 6.592 15 C -0.008 4.008 16 C -0.249 4.249 17 S 0.299 5.701 18 C 0.023 3.977 19 C 0.011 3.989 20 C -0.134 4.134 21 C -0.153 4.153 22 C -0.135 4.135 23 N -0.464 5.464 24 H 0.012 0.988 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.267 0.733 28 H 0.406 0.594 29 H 0.188 0.812 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -13.079 -20.517 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.800 3.200 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.186 1.186 12 N -0.333 5.333 13 C 0.356 3.644 14 O -0.474 6.474 15 C -0.143 4.143 16 C -0.392 4.392 17 S 0.558 5.442 18 C -0.256 4.256 19 C 0.007 3.993 20 C -0.193 4.193 21 C -0.211 4.211 22 C -0.194 4.194 23 N -0.179 5.179 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.241 0.759 29 H 0.205 0.795 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.597 -12.415 -20.951 25.511 hybrid contribution -0.375 0.511 2.150 2.241 sum 7.222 -11.904 -18.801 23.396 Atomic orbital electron populations 1.21889 0.97902 0.99452 0.99807 1.18486 0.91450 0.92022 0.81547 0.97910 1.21470 1.32899 1.13599 0.90803 0.91407 1.25805 0.94701 0.95587 1.02235 1.70041 1.36744 1.23801 1.24796 0.85294 0.77923 0.79044 0.77776 1.20162 1.20438 1.18612 1.46203 1.63435 1.14338 1.09304 1.17738 0.77800 0.85731 0.83167 1.90717 1.54166 1.16909 1.85623 1.20250 1.08310 0.90558 0.95148 1.26918 1.06402 1.08209 0.97659 1.82154 1.54724 0.96062 1.11222 1.27884 1.02450 1.03307 0.92003 1.19447 0.96922 0.84358 0.98602 1.21854 0.96551 0.99341 1.01563 1.22075 1.02425 1.05023 0.91574 1.21856 0.96005 1.02986 0.98504 1.66786 1.13692 1.10376 1.27044 0.96884 0.94287 0.90875 0.92330 0.75873 0.79471 0.92367 0.89175 0.93757 0.91127 0.88405 0.91048 0.93793 0.89157 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 2 C 0.27 15.07 2.56 44.24 0.11 15.19 16 3 H 0.00 0.19 7.58 -2.39 -0.02 0.18 16 4 C -0.55 -31.05 8.73 25.60 0.22 -30.82 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.95 5.30 84.66 0.45 1.39 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 12 N -0.69 -33.41 5.07 -449.51 -2.28 -35.69 16 13 C 0.57 26.95 7.76 86.61 0.67 27.62 16 14 O -0.59 -31.81 16.37 -4.13 -0.07 -31.88 16 15 C -0.01 -0.29 6.70 40.56 0.27 -0.02 16 16 C -0.25 -7.30 10.62 67.12 0.71 -6.58 16 17 S 0.30 5.60 21.28 -56.49 -1.20 4.40 16 18 C 0.02 0.54 5.74 88.57 0.51 1.05 16 19 C 0.01 0.17 0.99 -52.93 -0.05 0.12 16 20 C -0.13 -2.19 8.45 71.98 0.61 -1.58 16 21 C -0.15 -1.41 7.53 71.98 0.54 -0.87 16 22 C -0.13 -2.24 8.44 71.98 0.61 -1.64 16 23 N -0.46 -14.98 10.10 -180.84 -1.83 -16.81 16 24 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 4.23 6.07 -2.38 -0.01 4.21 16 27 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.41 18.24 8.06 -92.70 -0.75 17.49 16 29 H 0.19 5.27 8.03 -2.91 -0.02 5.25 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.58 7.91 -2.38 -0.02 0.56 16 34 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.07 0.57 7.91 -2.38 -0.02 0.55 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.83 331.97 2.53 -69.30 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.31 Total: 21.48 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.32 Total: -2.61 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -3.86 Total: -106.18 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.07 Total: -31.88 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.20 Total: 4.40 kcal Total: -71.83 2.53 -69.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263792752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.528 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds