Wall clock time and date at job start Tue Mar 31 2020 05:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.33484 * 119.95313 * 177.77387 * 3 2 1 5 5 N 1.28363 * 123.18312 * 179.97438 * 4 3 2 6 6 C 1.34006 * 122.00175 * 359.97438 * 5 4 3 7 7 C 1.40287 * 121.53455 * 179.97438 * 6 5 4 8 8 C 1.36287 * 119.68385 * 180.02562 * 7 6 5 9 9 C 1.39205 * 121.10464 * 0.02562 * 8 7 6 10 10 C 1.36408 * 120.80707 * 359.97438 * 9 8 7 11 11 C 1.39944 * 119.49950 * 359.73875 * 10 9 8 12 12 C 1.40224 * 119.95999 * 357.74755 * 3 2 1 13 13 N 1.37955 * 121.40694 * 359.97438 * 12 3 2 14 14 C 1.46901 * 110.99730 * 60.00381 * 13 12 3 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47291 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47116 * 59.99479 * 21 19 17 23 23 H 1.48490 * 109.47381 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46756 * 300.00079 * 21 19 17 25 25 H 1.08000 * 120.15443 * 0.04081 * 7 6 5 26 26 H 1.08004 * 119.44604 * 179.97438 * 8 7 6 27 27 H 1.07999 * 119.59940 * 179.97438 * 9 8 7 28 28 H 1.08000 * 120.24898 * 180.02562 * 10 9 8 29 29 H 1.00899 * 111.00194 * 296.04680 * 13 12 3 30 30 H 1.09002 * 109.47401 * 59.99596 * 14 13 12 31 31 H 1.09001 * 109.46874 * 299.99609 * 14 13 12 32 32 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 33 33 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 34 34 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 35 35 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 36 36 H 0.97000 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2340 1.1566 -0.0449 5 7 4.5155 1.2295 -0.0473 6 6 5.2891 0.1361 -0.0037 7 6 6.6890 0.2271 -0.0072 8 6 7.4394 -0.9097 0.0376 9 6 6.8403 -2.1653 0.0864 10 6 5.4821 -2.2917 0.0913 11 6 4.6831 -1.1434 0.0522 12 6 3.2688 -1.2130 0.0477 13 7 2.6083 -2.4231 0.0959 14 6 1.7539 -2.6038 -1.0854 15 6 1.0400 -3.9541 -0.9966 16 6 0.1506 -4.1426 -2.2272 17 6 -0.5521 -5.4729 -2.1402 18 1 -0.3811 -6.1195 -1.2921 19 6 -1.4134 -5.8646 -3.1431 20 7 -1.6220 -5.0770 -4.1755 21 14 -2.2850 -7.5132 -3.0349 22 1 -3.1215 -7.5514 -1.8084 23 1 -3.1481 -7.6962 -4.2292 24 1 -1.2776 -8.6030 -2.9810 25 1 7.1697 1.1935 -0.0450 26 1 8.5168 -0.8352 0.0342 27 1 7.4584 -3.0503 0.1209 28 1 5.0269 -3.2703 0.1298 29 1 2.0723 -2.5090 0.9464 30 1 2.3678 -2.5762 -1.9856 31 1 1.0148 -1.8036 -1.1250 32 1 1.7793 -4.7541 -0.9573 33 1 0.4261 -3.9821 -0.0964 34 1 -0.5888 -3.3427 -2.2670 35 1 0.7648 -4.1147 -3.1272 36 1 -2.2282 -5.3524 -4.8809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265844949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:10 Heat of formation + Delta-G solvation = 109.083791 kcal Electronic energy + Delta-G solvation = -20406.213199 eV Core-core repulsion = 17277.044794 eV Total energy + Delta-G solvation = -3129.168405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79511 -38.56325 -37.74759 -36.31950 -34.18300 -32.63072 -32.04954 -31.14737 -30.06625 -26.69958 -25.43899 -24.80733 -22.97419 -22.02978 -20.52510 -20.43921 -19.06056 -17.85762 -16.70289 -16.47677 -15.81867 -15.43831 -15.21395 -14.92318 -14.45884 -14.31608 -14.06486 -13.69495 -13.59276 -13.08694 -12.75864 -12.54541 -12.39485 -12.29289 -11.95587 -11.78947 -11.35597 -10.91197 -10.80320 -10.76199 -10.57873 -10.36182 -9.86748 -9.71696 -9.49025 -9.18209 -8.96812 -8.60685 -8.38963 -6.03687 -4.06899 -0.48293 0.03004 1.31966 2.08094 2.29897 3.03485 3.10392 3.31064 3.35666 3.36942 3.41017 3.60368 3.80430 4.13536 4.34714 4.42309 4.44821 4.56528 4.74841 4.93815 5.15054 5.27401 5.31916 5.37708 5.47656 5.57675 5.71361 5.88359 5.97500 6.00342 6.31365 6.33953 6.47438 6.82542 6.85850 7.01600 7.17564 7.59462 7.71627 7.94306 8.20336 8.35606 8.99371 9.57460 11.07671 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.003624 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.488050 B = 7724.891387 C = 8623.657440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C 0.257 3.743 3 C 0.057 3.943 4 N -0.171 5.171 5 N -0.204 5.204 6 C 0.082 3.918 7 C -0.091 4.091 8 C -0.081 4.081 9 C -0.109 4.109 10 C -0.065 4.065 11 C -0.062 4.062 12 C 0.203 3.797 13 N -0.646 5.646 14 C 0.052 3.948 15 C -0.104 4.104 16 C 0.023 3.977 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.146 0.854 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.153 0.847 29 H 0.368 0.632 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.017 0.983 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.255 8.131 10.215 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.036 5.036 2 C -0.061 4.061 3 C -0.079 4.079 4 N -0.029 5.029 5 N -0.061 5.061 6 C -0.045 4.045 7 C -0.112 4.112 8 C -0.102 4.102 9 C -0.129 4.129 10 C -0.084 4.084 11 C -0.071 4.071 12 C 0.091 3.909 13 N -0.281 5.281 14 C -0.074 4.074 15 C -0.142 4.142 16 C -0.015 4.015 17 C -0.560 4.560 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.164 0.836 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.171 0.829 29 H 0.196 0.804 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.771 9.324 9.739 23.111 hybrid contribution -0.772 -1.735 0.135 1.903 sum 17.999 7.589 9.874 21.887 Atomic orbital electron populations 1.81374 1.10800 1.05412 1.06036 1.24429 0.91191 0.95067 0.95428 1.18804 0.88203 0.92778 1.08165 1.73199 1.02362 1.22440 1.04874 1.73900 0.97323 1.25027 1.09877 1.20429 0.96356 0.89649 0.98059 1.20746 0.90090 1.00268 1.00066 1.21143 1.00908 0.92014 0.96133 1.21203 0.94947 0.98176 0.98544 1.21131 0.93186 0.98457 0.95578 1.18693 0.91924 0.95012 1.01442 1.19807 0.92775 0.88977 0.89354 1.57663 1.35597 1.26800 1.08056 1.22590 0.94038 1.00602 0.90122 1.21660 0.98370 0.92708 1.01494 1.19053 0.93861 0.97115 0.91430 1.21144 1.25739 1.03005 1.06156 0.92622 1.25029 0.96736 0.97270 0.95387 1.69957 1.36748 1.36812 1.09826 0.86634 0.79623 0.84153 0.77460 1.20218 1.21260 1.20174 0.83628 0.84456 0.84498 0.82912 0.80443 0.90214 0.94061 0.91873 0.93102 0.96629 0.96448 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -6.26 18.16 41.84 0.76 -5.50 16 2 C 0.26 3.97 12.59 -22.47 -0.28 3.69 16 3 C 0.06 0.79 6.58 -84.48 -0.56 0.23 16 4 N -0.17 -2.44 11.41 32.42 0.37 -2.07 16 5 N -0.20 -2.65 11.54 32.20 0.37 -2.28 16 6 C 0.08 0.89 6.68 -84.83 -0.57 0.33 16 7 C -0.09 -0.69 10.00 -39.51 -0.39 -1.09 16 8 C -0.08 -0.47 9.94 -39.92 -0.40 -0.86 16 9 C -0.11 -0.69 9.96 -39.88 -0.40 -1.09 16 10 C -0.06 -0.56 9.59 -39.60 -0.38 -0.94 16 11 C -0.06 -0.68 5.76 -106.66 -0.61 -1.29 16 12 C 0.20 2.52 5.63 -83.08 -0.47 2.05 16 13 N -0.65 -8.16 5.53 -57.71 -0.32 -8.48 16 14 C 0.05 0.84 5.27 -3.82 -0.02 0.82 16 15 C -0.10 -2.02 5.41 -26.73 -0.14 -2.16 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 26 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 27 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 28 H 0.15 1.29 7.67 -52.49 -0.40 0.89 16 29 H 0.37 4.24 8.72 -39.29 -0.34 3.90 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.04 0.72 5.01 -51.93 -0.26 0.46 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -32.07 320.07 -6.98 -39.05 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.93 Total: -2.59 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -4.77 Total: -13.28 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 1.92 Total: -44.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.07 -6.98 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265844949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.131 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds