Wall clock time and date at job start Tue Mar 31 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99529 * 2 1 4 4 H 1.09000 * 109.47551 * 29.99786 * 3 2 1 5 5 C 1.53002 * 109.46804 * 269.99611 * 3 2 1 6 6 C 1.50699 * 109.47111 * 150.00207 * 3 2 1 7 7 N 1.29030 * 124.91625 * 225.00436 * 6 3 2 8 8 C 1.31782 * 117.12472 * 179.97438 * 7 6 3 9 9 C 1.50699 * 122.74766 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47158 * 275.00027 * 9 8 7 11 11 C 1.36935 * 120.00083 * 90.00345 * 10 9 8 12 12 H 1.08003 * 119.99805 * 214.56907 * 11 10 9 13 13 C 1.38812 * 120.00196 * 34.56136 * 11 10 9 14 14 N 1.31615 * 119.99832 * 21.95461 * 13 11 10 15 15 Si 1.86800 * 119.99892 * 201.94922 * 13 11 10 16 16 H 1.48497 * 109.47357 * 270.00312 * 15 13 11 17 17 H 1.48496 * 109.47259 * 30.00588 * 15 13 11 18 18 H 1.48506 * 109.46653 * 150.00155 * 15 13 11 19 19 C 1.46505 * 119.99896 * 269.99774 * 10 9 8 20 20 C 1.52996 * 117.49852 * 193.77670 * 19 10 9 21 21 C 1.53004 * 60.00258 * 252.51329 * 20 19 10 22 22 C 1.33640 * 114.50106 * 0.22788 * 8 7 6 23 23 S 1.70982 * 124.91705 * 44.99165 * 6 3 2 24 24 H 1.08998 * 109.47199 * 300.00254 * 1 2 3 25 25 H 1.09000 * 109.47096 * 60.00620 * 1 2 3 26 26 H 1.08997 * 109.46789 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46801 * 180.02562 * 5 3 2 28 28 H 1.09000 * 109.47614 * 300.00028 * 5 3 2 29 29 H 1.08998 * 109.47274 * 60.00267 * 5 3 2 30 30 H 1.09000 * 109.47366 * 154.99731 * 9 8 7 31 31 H 1.08999 * 109.47182 * 35.00080 * 9 8 7 32 32 H 0.97000 * 119.99957 * 180.02562 * 14 13 11 33 33 H 1.08994 * 115.55136 * 339.48932 * 19 10 9 34 34 H 1.08996 * 117.49945 * 359.97438 * 20 19 10 35 35 H 1.08997 * 117.50164 * 145.02447 * 20 19 10 36 36 H 1.09001 * 117.49772 * 252.51405 * 21 20 19 37 37 H 1.08997 * 117.51966 * 107.47530 * 21 20 19 38 38 H 1.07996 * 126.03615 * 179.76775 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9995 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2641 0.7104 7 7 3.7374 2.1281 1.5818 8 6 4.9307 1.9425 2.1093 9 6 5.5213 2.8730 3.1370 10 7 6.1749 3.9962 2.4606 11 6 5.4640 5.1315 2.1760 12 1 5.6744 5.6887 1.2750 13 6 4.4730 5.5662 3.0454 14 7 4.4887 5.1843 4.3049 15 14 3.1173 6.6932 2.4279 16 1 3.5363 8.1082 2.5931 17 1 2.8604 6.4175 0.9915 18 1 1.8775 6.4496 3.2082 19 6 7.5890 3.9049 2.0888 20 6 8.2987 5.1992 1.6864 21 6 7.9517 4.1548 0.6235 22 6 5.5763 0.8646 1.6541 23 16 4.5354 0.0652 0.4785 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.6613 2.7671 -1.4425 28 1 2.8829 1.0775 -1.9564 29 1 1.2568 1.8014 -1.9564 30 1 6.2545 2.3337 3.7368 31 1 4.7291 3.2497 3.7840 32 1 3.7960 5.4877 4.9123 33 1 8.1705 3.1593 2.6310 34 1 7.7134 6.1186 1.6980 35 1 9.3473 5.3055 1.9641 36 1 8.7721 3.5740 0.2020 37 1 7.1381 4.3868 -0.0638 38 1 6.5615 0.5400 1.9549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266982095.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:46 Heat of formation + Delta-G solvation = 52.554880 kcal Electronic energy + Delta-G solvation = -20399.204558 eV Core-core repulsion = 17370.736076 eV Total energy + Delta-G solvation = -3028.468483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35466 -38.04791 -36.85814 -33.59075 -32.29216 -30.69536 -28.93733 -26.88057 -25.94980 -24.74973 -23.54073 -21.37972 -21.23182 -19.88636 -19.20609 -17.45717 -16.27602 -16.19774 -15.73846 -15.29994 -15.28015 -14.41130 -14.01991 -13.83098 -13.68741 -13.22967 -12.70559 -12.59565 -12.54289 -12.15747 -11.77200 -11.65079 -11.39482 -11.02767 -10.94623 -10.76312 -10.67475 -10.61145 -10.10140 -9.97623 -9.83194 -9.66182 -9.34810 -8.92747 -8.75831 -8.41591 -8.06641 -6.58796 -5.81348 -3.35862 1.30263 1.98122 2.38904 3.36729 3.42495 3.44812 3.50009 3.67834 4.48413 4.66256 4.94333 5.09656 5.17430 5.26014 5.31373 5.36929 5.39639 5.55655 5.58017 5.74491 5.82951 5.85339 5.87803 6.07433 6.17000 6.20291 6.29350 6.47008 6.56754 6.67955 6.89522 6.97803 7.10343 7.15716 7.58235 7.80528 8.41567 8.59779 9.12289 9.77401 10.29264 11.18666 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.006849 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.826596 B = 4087.251269 C = 5137.652778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.166 3.834 4 H 0.089 0.911 5 C -0.166 4.166 6 C 0.036 3.964 7 N -0.430 5.430 8 C 0.085 3.915 9 C 0.203 3.797 10 N -0.536 5.536 11 C -0.253 4.253 12 H 0.061 0.939 13 C 0.023 3.977 14 N -0.884 5.884 15 Si 0.900 3.100 16 H -0.288 1.288 17 H -0.278 1.278 18 H -0.288 1.288 19 C 0.126 3.874 20 C -0.193 4.193 21 C -0.227 4.227 22 C -0.267 4.267 23 S 0.085 5.915 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.256 0.744 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 -9.771 -7.531 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.105 3.895 4 H 0.107 0.893 5 C -0.225 4.225 6 C -0.243 4.243 7 N -0.146 5.146 8 C -0.049 4.049 9 C 0.074 3.926 10 N -0.250 5.250 11 C -0.382 4.382 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.526 5.526 15 Si 0.729 3.271 16 H -0.215 1.215 17 H -0.203 1.203 18 H -0.214 1.214 19 C 0.017 3.983 20 C -0.232 4.232 21 C -0.268 4.268 22 C -0.407 4.407 23 S 0.338 5.662 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.307 -10.332 -7.823 13.374 hybrid contribution -0.477 1.360 0.106 1.445 sum -3.784 -8.972 -7.717 12.424 Atomic orbital electron populations 1.22799 0.80589 1.02760 1.00260 1.87907 1.19967 1.27039 1.95117 1.20243 0.89165 0.85271 0.94867 0.89337 1.22258 1.02608 1.02686 0.94915 1.26559 1.00524 0.96268 1.00923 1.66108 1.15730 1.25303 1.07413 1.21907 0.88329 0.94508 1.00126 1.19822 0.97791 0.84850 0.90155 1.43309 1.02707 1.12079 1.66948 1.18817 1.14857 1.02024 1.02537 0.92173 1.24995 1.00628 0.98016 0.94129 1.69907 1.33725 1.46573 1.02347 0.86354 0.82037 0.79981 0.78724 1.21482 1.20338 1.21369 1.21126 0.86714 0.97099 0.93380 1.23068 0.99281 0.96030 1.04820 1.23340 1.02622 1.05202 0.95593 1.26882 1.05660 1.02420 1.05725 1.83533 1.10663 1.30292 1.41662 0.93696 0.93886 0.89485 0.90599 0.91518 0.91635 0.93538 0.86203 0.93368 0.89342 0.88285 0.90709 0.90970 0.89907 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.38 -5.45 10.18 -35.23 -0.36 -5.81 16 3 C 0.17 2.58 3.24 -27.88 -0.09 2.49 16 4 H 0.09 1.39 7.79 -51.93 -0.40 0.99 16 5 C -0.17 -2.22 9.51 37.16 0.35 -1.87 16 6 C 0.04 0.68 6.34 -13.46 -0.09 0.59 16 7 N -0.43 -9.58 10.53 -8.06 -0.08 -9.66 16 8 C 0.09 1.85 6.32 -84.23 -0.53 1.32 16 9 C 0.20 4.79 5.77 -5.19 -0.03 4.76 16 10 N -0.54 -13.19 2.79 -167.02 -0.47 -13.66 16 11 C -0.25 -6.84 8.17 -15.06 -0.12 -6.96 16 12 H 0.06 1.66 7.08 -52.48 -0.37 1.29 16 13 C 0.02 0.63 4.97 -17.43 -0.09 0.54 16 14 N -0.88 -25.03 11.29 55.49 0.63 -24.40 16 15 Si 0.90 22.06 29.61 -169.99 -5.03 17.03 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 C 0.13 2.69 6.61 -67.93 -0.45 2.24 16 20 C -0.19 -3.86 9.79 -26.73 -0.26 -4.12 16 21 C -0.23 -4.43 10.08 -26.73 -0.27 -4.70 16 22 C -0.27 -4.92 11.12 29.12 0.32 -4.59 16 23 S 0.09 1.42 23.01 -107.50 -2.47 -1.05 16 24 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 25 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 30 H 0.05 1.00 8.00 -51.93 -0.42 0.58 16 31 H 0.12 3.23 5.31 -51.93 -0.28 2.96 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.09 1.71 8.10 -51.93 -0.42 1.28 16 34 H 0.10 2.19 6.87 -51.93 -0.36 1.84 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.78 8.04 -51.93 -0.42 1.36 16 38 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -29.96 333.58 -8.49 -38.45 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.57 Total: 2.95 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.16 Total: -8.87 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.08 Total: -47.73 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.36 Total: -5.81 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.47 Total: -1.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.96 -8.49 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266982095.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.007 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds